Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34817 * 126.59345 * 2 1 4 4 C 1.36590 * 106.84272 * 180.15486 * 3 2 1 5 5 C 1.47519 * 125.77605 * 179.84307 * 4 3 2 6 6 O 1.21604 * 119.99896 * 353.32687 * 5 4 3 7 7 N 1.34775 * 120.00541 * 173.60240 * 5 4 3 8 8 C 1.46928 * 120.62985 * 3.88988 * 7 5 4 9 9 C 1.52755 * 109.01293 * 233.58545 * 8 7 5 10 10 C 1.53034 * 109.38421 * 305.59127 * 9 8 7 11 11 C 1.53001 * 109.45194 * 181.25151 * 10 9 8 12 12 C 1.50700 * 109.46897 * 64.93595 * 11 10 9 13 13 H 1.08002 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99668 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99696 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00276 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47295 * 89.99575 * 16 14 12 18 18 H 1.48500 * 109.47052 * 209.99837 * 16 14 12 19 19 H 1.48499 * 109.46966 * 329.99363 * 16 14 12 20 20 C 1.53048 * 109.54093 * 61.23567 * 10 9 8 21 21 C 1.46922 * 120.63479 * 184.17251 * 7 5 4 22 22 N 1.34405 * 108.45723 * 359.57800 * 4 3 2 23 23 N 1.28761 * 109.52097 * 0.26524 * 22 4 3 24 24 H 1.09007 * 109.46559 * 270.28028 * 1 2 3 25 25 H 1.08993 * 109.47587 * 30.28266 * 1 2 3 26 26 H 1.08998 * 109.46905 * 150.28707 * 1 2 3 27 27 H 1.08002 * 126.58016 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.58271 * 353.42191 * 8 7 5 29 29 H 1.09000 * 109.58707 * 113.84248 * 8 7 5 30 30 H 1.08992 * 109.56760 * 185.55341 * 9 8 7 31 31 H 1.08999 * 109.35875 * 65.49824 * 9 8 7 32 32 H 1.09002 * 109.45870 * 301.21673 * 10 9 8 33 33 H 1.09000 * 109.46841 * 184.93503 * 11 10 9 34 34 H 1.08999 * 109.46955 * 304.93466 * 11 10 9 35 35 H 0.97000 * 120.00047 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.49663 * 178.68972 * 20 10 9 37 37 H 1.08991 * 109.52154 * 58.60635 * 20 10 9 38 38 H 1.08994 * 109.58838 * 246.15554 * 21 7 5 39 39 H 1.09003 * 109.58343 * 6.43842 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6209 -0.0035 5 6 4.7704 1.4558 -0.0081 6 8 4.6792 2.6622 -0.1314 7 7 5.9829 0.8813 0.1187 8 6 6.1161 -0.5808 0.1770 9 6 6.9079 -0.9589 1.4274 10 6 8.2399 -0.2054 1.4323 11 6 9.0477 -0.6067 2.6682 12 6 9.4135 -2.0658 2.5772 13 1 9.1014 -2.6485 1.7231 14 6 10.1475 -2.6565 3.5838 15 7 10.4672 -3.9297 3.5042 16 14 10.6879 -1.6484 5.0607 17 1 9.6465 -1.7202 6.1168 18 1 11.9662 -2.1895 5.5883 19 1 10.8807 -0.2342 4.6509 20 6 7.9753 1.3017 1.4633 21 6 7.1961 1.7052 0.2076 22 7 3.5239 -0.7228 0.0038 23 7 2.3009 -1.1256 0.0060 24 1 -0.3633 0.0050 1.0277 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9561 2.1162 -0.0004 28 1 5.1267 -1.0363 0.2210 29 1 6.6447 -0.9351 -0.7079 30 1 7.0971 -2.0323 1.4289 31 1 6.3340 -0.6889 2.3139 32 1 8.8026 -0.4569 0.5333 33 1 9.9563 -0.0067 2.7188 34 1 8.4499 -0.4371 3.5637 35 1 10.9833 -4.3454 4.2125 36 1 8.9244 1.8371 1.4903 37 1 7.3917 1.5509 2.3494 38 1 7.8147 1.5411 -0.6747 39 1 6.9194 2.7577 0.2692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399310960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 67.952995 kcal Electronic energy + Delta-G solvation = -21653.884246 eV Core-core repulsion = 18406.079407 eV Total energy + Delta-G solvation = -3247.804839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43081 -39.68979 -37.30783 -35.03943 -33.90679 -32.13575 -31.33890 -30.52074 -28.61906 -28.05386 -25.06840 -23.25461 -22.99447 -22.24673 -21.28342 -20.01435 -18.98724 -17.54215 -16.69890 -16.48993 -16.39122 -15.81178 -15.04106 -14.83503 -14.30572 -14.02173 -13.73481 -13.63955 -13.47155 -13.28284 -13.13082 -12.72646 -12.33498 -12.20953 -12.05512 -11.36067 -11.34094 -10.96425 -10.69566 -10.64109 -10.47412 -10.17641 -9.98633 -9.79803 -9.51538 -9.46398 -9.22812 -8.95716 -8.47892 -8.31374 -5.98645 -3.95400 0.92757 1.58961 1.79043 3.09742 3.30955 3.34531 3.41916 3.45955 4.03283 4.06182 4.50012 4.50587 4.56203 4.75265 4.84909 5.09201 5.18315 5.34941 5.41492 5.50975 5.54117 5.69291 5.78335 6.01239 6.05792 6.08397 6.36784 6.40223 6.44437 6.58710 6.80468 6.91435 6.97324 7.11896 7.34629 7.50103 7.55402 7.80476 7.86293 8.23477 8.60486 9.06961 9.64671 11.14713 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.004099 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.531878 B = 6829.403600 C = 7495.813825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.364 5.364 3 C 0.089 3.911 4 C -0.090 4.090 5 C 0.600 3.400 6 O -0.554 6.554 7 N -0.585 5.585 8 C 0.064 3.936 9 C -0.116 4.116 10 C -0.074 4.074 11 C -0.009 4.009 12 C -0.513 4.513 13 H 0.074 0.926 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.878 3.122 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.131 4.131 21 C 0.112 3.888 22 N -0.198 5.198 23 N -0.066 5.066 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.205 0.795 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 11.109 -7.920 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.149 5.149 3 C -0.067 4.067 4 C -0.229 4.229 5 C 0.386 3.614 6 O -0.432 6.432 7 N -0.316 5.316 8 C -0.059 4.059 9 C -0.154 4.154 10 C -0.093 4.093 11 C -0.046 4.046 12 C -0.551 4.551 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.705 3.295 17 H -0.205 1.205 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.170 4.170 21 C -0.010 4.010 22 N -0.071 5.071 23 N -0.045 5.045 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.222 0.778 28 H 0.154 0.846 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.942 10.060 -7.893 23.689 hybrid contribution 0.238 1.334 0.967 1.665 sum -19.703 11.394 -6.926 23.791 Atomic orbital electron populations 1.22199 0.72575 1.05750 1.04816 1.50375 1.09099 1.05741 1.49709 1.23319 0.90030 0.94948 0.98412 1.21524 0.94687 0.90243 1.16489 1.16805 0.81734 0.85984 0.76910 1.90764 1.86390 1.13588 1.52479 1.47995 1.05365 1.08680 1.69555 1.22943 1.05717 0.78003 0.99192 1.21778 0.95420 1.02283 0.95924 1.21042 0.95971 0.91594 1.00688 1.19618 0.94645 0.97418 0.92957 1.21159 1.33467 0.93321 1.07191 0.90772 1.25027 0.95692 0.94727 0.98116 1.69918 1.39604 1.10977 1.33938 0.86812 0.78106 0.81158 0.83395 1.20463 1.21546 1.19072 1.22058 0.99564 0.98543 0.96786 1.21707 0.84930 0.95548 0.98773 1.74244 1.11636 1.10244 1.10943 1.82078 0.93834 1.06677 1.21944 0.89182 0.88428 0.88028 0.77837 0.84612 0.91821 0.89257 0.92772 0.91735 0.96692 0.97203 0.92875 0.91083 0.92137 0.91440 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.51 59.85 0.69 0.97 16 2 N -0.36 -3.23 4.03 -67.85 -0.27 -3.50 16 3 C 0.09 0.87 11.31 -16.84 -0.19 0.68 16 4 C -0.09 -1.23 6.77 -83.55 -0.57 -1.80 16 5 C 0.60 9.42 7.69 -12.48 -0.10 9.32 16 6 O -0.55 -9.46 16.30 5.27 0.09 -9.38 16 7 N -0.59 -9.33 2.98 -174.26 -0.52 -9.85 16 8 C 0.06 1.05 6.28 -3.93 -0.02 1.02 16 9 C -0.12 -2.19 5.17 -26.84 -0.14 -2.32 16 10 C -0.07 -1.46 2.10 -90.58 -0.19 -1.65 16 11 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 12 C -0.51 -14.45 8.94 -34.44 -0.31 -14.76 16 13 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 14 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 16 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 20 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 21 C 0.11 1.70 6.42 -3.71 -0.02 1.68 16 22 N -0.20 -2.89 8.63 32.84 0.28 -2.60 16 23 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 24 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 26 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 28 H 0.14 2.20 3.61 -130.79 -0.47 1.72 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.86 6.91 -51.93 -0.36 1.50 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 34 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.28 7.03 -51.93 -0.36 0.91 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -34.88 317.73 -5.63 -40.50 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.74 Total: -2.35 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.19 Total: -7.70 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.10 Total: -43.22 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.88 -5.63 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399310960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.455 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds