Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34817 * 126.59345 * 2 1 4 4 C 1.36590 * 106.84272 * 180.15486 * 3 2 1 5 5 C 1.47519 * 125.77605 * 179.84307 * 4 3 2 6 6 O 1.21604 * 119.99896 * 353.32687 * 5 4 3 7 7 N 1.34775 * 120.00541 * 173.60240 * 5 4 3 8 8 C 1.46928 * 120.62985 * 3.88988 * 7 5 4 9 9 C 1.52755 * 109.01293 * 233.58545 * 8 7 5 10 10 C 1.53034 * 109.38421 * 305.59127 * 9 8 7 11 11 C 1.53001 * 109.45194 * 181.25151 * 10 9 8 12 12 C 1.50700 * 109.46897 * 64.93595 * 11 10 9 13 13 H 1.08002 * 119.99862 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99668 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99696 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00276 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47295 * 89.99575 * 16 14 12 18 18 H 1.48500 * 109.47052 * 209.99837 * 16 14 12 19 19 H 1.48499 * 109.46966 * 329.99363 * 16 14 12 20 20 C 1.53048 * 109.54093 * 61.23567 * 10 9 8 21 21 C 1.46922 * 120.63479 * 184.17251 * 7 5 4 22 22 N 1.34405 * 108.45723 * 359.57800 * 4 3 2 23 23 N 1.28761 * 109.52097 * 0.26524 * 22 4 3 24 24 H 1.09007 * 109.46559 * 270.28028 * 1 2 3 25 25 H 1.08993 * 109.47587 * 30.28266 * 1 2 3 26 26 H 1.08998 * 109.46905 * 150.28707 * 1 2 3 27 27 H 1.08002 * 126.58016 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.58271 * 353.42191 * 8 7 5 29 29 H 1.09000 * 109.58707 * 113.84248 * 8 7 5 30 30 H 1.08992 * 109.56760 * 185.55341 * 9 8 7 31 31 H 1.08999 * 109.35875 * 65.49824 * 9 8 7 32 32 H 1.09002 * 109.45870 * 301.21673 * 10 9 8 33 33 H 1.09000 * 109.46841 * 184.93503 * 11 10 9 34 34 H 1.08999 * 109.46955 * 304.93466 * 11 10 9 35 35 H 0.97000 * 120.00047 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.49663 * 178.68972 * 20 10 9 37 37 H 1.08991 * 109.52154 * 58.60635 * 20 10 9 38 38 H 1.08994 * 109.58838 * 246.15554 * 21 7 5 39 39 H 1.09003 * 109.58343 * 6.43842 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6209 -0.0035 5 6 4.7704 1.4558 -0.0081 6 8 4.6792 2.6622 -0.1314 7 7 5.9829 0.8813 0.1187 8 6 6.1161 -0.5808 0.1770 9 6 6.9079 -0.9589 1.4274 10 6 8.2399 -0.2054 1.4323 11 6 9.0477 -0.6067 2.6682 12 6 9.4135 -2.0658 2.5772 13 1 9.1014 -2.6485 1.7231 14 6 10.1475 -2.6565 3.5838 15 7 10.4672 -3.9297 3.5042 16 14 10.6879 -1.6484 5.0607 17 1 9.6465 -1.7202 6.1168 18 1 11.9662 -2.1895 5.5883 19 1 10.8807 -0.2342 4.6509 20 6 7.9753 1.3017 1.4633 21 6 7.1961 1.7052 0.2076 22 7 3.5239 -0.7228 0.0038 23 7 2.3009 -1.1256 0.0060 24 1 -0.3633 0.0050 1.0277 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5094 27 1 1.9561 2.1162 -0.0004 28 1 5.1267 -1.0363 0.2210 29 1 6.6447 -0.9351 -0.7079 30 1 7.0971 -2.0323 1.4289 31 1 6.3340 -0.6889 2.3139 32 1 8.8026 -0.4569 0.5333 33 1 9.9563 -0.0067 2.7188 34 1 8.4499 -0.4371 3.5637 35 1 10.9833 -4.3454 4.2125 36 1 8.9244 1.8371 1.4903 37 1 7.3917 1.5509 2.3494 38 1 7.8147 1.5411 -0.6747 39 1 6.9194 2.7577 0.2692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399310960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 43.675930 kcal Electronic energy + Delta-G solvation = -21654.936978 eV Core-core repulsion = 18406.079407 eV Total energy + Delta-G solvation = -3248.857571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.29919 -40.92315 -38.70117 -35.94062 -35.42862 -34.04298 -32.49209 -31.64088 -30.31708 -28.73556 -26.57864 -24.56462 -24.25625 -23.15485 -22.74679 -21.39585 -20.31656 -18.87087 -18.51730 -17.45929 -17.27690 -16.85676 -16.37108 -16.09400 -15.78752 -15.31228 -15.04275 -14.93166 -14.57143 -14.35977 -14.23289 -13.95598 -13.93358 -13.59837 -13.09703 -13.01120 -12.86467 -12.46081 -12.27218 -12.02263 -11.83384 -11.66427 -11.38831 -11.34016 -11.28160 -10.92777 -10.73353 -10.55807 -10.38772 -9.60311 -8.24281 -6.26059 0.15937 0.55794 1.19099 1.36357 1.37654 1.49566 1.96047 2.20096 2.38783 3.09224 3.11005 3.42758 3.77853 3.95587 3.97543 4.04713 4.13181 4.24610 4.33420 4.39783 4.44980 4.60196 4.67057 4.70788 4.75705 4.88707 4.97623 5.05302 5.16049 5.20214 5.34936 5.38630 5.44362 5.49387 5.65526 5.74752 5.77168 6.33320 6.36700 6.81308 6.82686 7.09450 7.37414 8.92309 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.004099 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.531878 B = 6829.403600 C = 7495.813825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.348 5.348 3 C 0.114 3.886 4 C -0.125 4.125 5 C 0.601 3.399 6 O -0.569 6.569 7 N -0.592 5.592 8 C 0.076 3.924 9 C -0.109 4.109 10 C -0.071 4.071 11 C -0.006 4.006 12 C -0.517 4.517 13 H 0.038 0.962 14 C 0.002 3.998 15 N -0.953 5.953 16 Si 0.945 3.055 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.247 1.247 20 C -0.121 4.121 21 C 0.115 3.885 22 N -0.228 5.228 23 N -0.095 5.095 24 H 0.107 0.893 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.243 0.757 28 H 0.143 0.857 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.817 13.821 -7.722 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.044 4.044 4 C -0.265 4.265 5 C 0.388 3.612 6 O -0.449 6.449 7 N -0.323 5.323 8 C -0.048 4.048 9 C -0.147 4.147 10 C -0.090 4.090 11 C -0.043 4.043 12 C -0.555 4.555 13 H 0.056 0.944 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.770 3.230 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.170 1.170 20 C -0.160 4.160 21 C -0.007 4.007 22 N -0.100 5.100 23 N -0.074 5.074 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.127 0.873 27 H 0.259 0.741 28 H 0.160 0.840 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.821 12.766 -7.709 26.430 hybrid contribution 0.646 0.452 0.839 1.152 sum -21.174 13.218 -6.870 25.889 Atomic orbital electron populations 1.22758 0.69142 1.07932 1.06627 1.50743 1.10769 1.04488 1.47267 1.23843 0.88639 0.96401 0.95536 1.21519 0.95433 0.90149 1.19363 1.17036 0.82069 0.86006 0.76069 1.90740 1.86696 1.14176 1.53317 1.48030 1.06021 1.08249 1.69953 1.22775 1.05628 0.78756 0.97594 1.21634 0.95556 1.00332 0.97183 1.20960 0.95458 0.94203 0.98397 1.19576 0.95368 0.94447 0.94936 1.21476 1.32722 0.95450 1.05865 0.94389 1.25970 0.96007 0.95847 1.01587 1.70073 1.41014 1.13024 1.35331 0.85725 0.77734 0.80278 0.79305 1.19700 1.21168 1.17002 1.21947 1.00662 0.95775 0.97571 1.21722 0.84748 0.95814 0.98410 1.74090 1.12843 1.11033 1.12031 1.81974 0.93865 1.08378 1.23200 0.87466 0.84850 0.87334 0.74083 0.84043 0.91650 0.92284 0.93479 0.92401 0.96203 0.97127 0.92751 0.89460 0.92417 0.90237 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.51 127.77 1.47 1.68 16 2 N -0.35 -5.27 4.03 -368.59 -1.49 -6.76 16 3 C 0.11 1.89 11.31 83.85 0.95 2.83 16 4 C -0.12 -3.25 6.77 40.81 0.28 -2.97 16 5 C 0.60 18.12 7.69 86.69 0.67 18.78 16 6 O -0.57 -18.39 16.30 -4.04 -0.07 -18.46 16 7 N -0.59 -18.39 2.98 -823.51 -2.45 -20.84 16 8 C 0.08 2.50 6.28 86.22 0.54 3.04 16 9 C -0.11 -4.22 5.17 30.52 0.16 -4.06 16 10 C -0.07 -2.81 2.10 -10.77 -0.02 -2.83 16 11 C -0.01 -0.28 3.52 29.85 0.10 -0.18 16 12 C -0.52 -29.96 8.94 25.60 0.23 -29.73 16 13 H 0.04 2.41 7.30 -2.91 -0.02 2.39 16 14 C 0.00 0.12 5.47 84.65 0.46 0.58 16 15 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 16 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 20 C -0.12 -3.83 5.36 30.67 0.16 -3.67 16 21 C 0.11 3.29 6.42 86.36 0.55 3.84 16 22 N -0.23 -6.60 8.63 -50.00 -0.43 -7.03 16 23 N -0.09 -2.36 13.78 37.02 0.51 -1.85 16 24 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 25 H 0.13 -0.50 8.14 -2.39 -0.02 -0.51 16 26 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.14 4.69 3.61 -104.43 -0.38 4.31 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.06 2.62 6.91 -2.39 -0.02 2.60 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 34 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 35 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.09 2.60 7.03 -2.39 -0.02 2.58 16 Total: -1.00 -77.85 317.73 4.44 -73.41 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.63 Total: 7.47 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.56 Total: -12.68 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -3.56 Total: -96.97 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.07 Total: -18.46 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -77.85 4.44 -73.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399310960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.085 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds