Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35851 * 126.13139 * 2 1 4 4 N 1.30178 * 109.00126 * 179.97438 * 3 2 1 5 5 C 1.35760 * 108.86686 * 0.02562 * 4 3 2 6 6 C 1.47324 * 126.23406 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99622 * 186.41484 * 6 5 4 8 8 N 1.34777 * 119.99964 * 6.42140 * 6 5 4 9 9 C 1.48211 * 119.96612 * 175.27276 * 8 6 5 10 10 C 1.47139 * 110.34400 * 102.46829 * 9 8 6 11 11 C 1.53787 * 111.84205 * 58.29332 * 10 9 8 12 12 N 1.43469 * 107.96121 * 281.66717 * 11 10 9 13 13 C 1.36935 * 118.93653 * 273.61405 * 12 11 10 14 14 H 1.07994 * 120.00373 * 21.08479 * 13 12 11 15 15 C 1.38816 * 119.99453 * 201.08390 * 13 12 11 16 16 N 1.31616 * 120.00056 * 35.52916 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 215.52169 * 15 13 12 18 18 H 1.48507 * 109.46992 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47167 * 60.00633 * 17 15 13 20 20 H 1.48506 * 109.47262 * 299.99941 * 17 15 13 21 21 C 1.48851 * 122.11886 * 93.88932 * 12 11 10 22 22 C 1.43621 * 119.96952 * 355.24224 * 8 6 5 23 23 C 1.35379 * 126.13804 * 180.29403 * 2 1 3 24 24 H 1.09002 * 109.46889 * 89.97452 * 1 2 3 25 25 H 1.09003 * 109.46782 * 209.96605 * 1 2 3 26 26 H 1.08990 * 109.47279 * 329.96808 * 1 2 3 27 27 H 1.08000 * 125.50158 * 0.04249 * 3 2 1 28 28 H 1.09001 * 109.32541 * 342.19327 * 9 8 6 29 29 H 1.09006 * 109.18152 * 222.63964 * 9 8 6 30 30 H 1.08998 * 109.00318 * 297.68332 * 10 9 8 31 31 H 1.08998 * 109.00600 * 178.90199 * 10 9 8 32 32 H 1.09000 * 109.76475 * 162.05317 * 11 10 9 33 33 H 1.09000 * 109.80797 * 41.30596 * 11 10 9 34 34 H 0.96999 * 120.00129 * 5.76506 * 16 15 13 35 35 H 1.09002 * 109.48572 * 80.35040 * 21 12 11 36 36 H 1.09006 * 109.48241 * 200.38319 * 21 12 11 37 37 H 1.08995 * 108.87065 * 31.47387 * 22 8 6 38 38 H 1.08994 * 108.86973 * 149.90729 * 22 8 6 39 39 H 1.07999 * 126.56330 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2660 1.0972 0.0000 4 7 3.5101 0.7138 0.0006 5 6 3.5512 -0.6432 0.0003 6 6 4.7654 -1.4776 0.0003 7 8 4.6737 -2.6846 -0.1176 8 7 5.9777 -0.9033 0.1310 9 6 7.1901 -1.7493 0.2362 10 6 7.9104 -1.7727 -1.0466 11 6 8.3181 -0.3608 -1.4997 12 7 7.1599 0.2768 -2.0567 13 6 6.8677 0.0807 -3.3801 14 1 7.2680 -0.7769 -3.9002 15 6 6.0569 0.9845 -4.0530 16 7 6.1225 2.2674 -3.7667 17 14 4.8727 0.3797 -5.3650 18 1 4.1274 1.5338 -5.9291 19 1 3.9149 -0.5816 -4.7621 20 1 5.6348 -0.2935 -6.4473 21 6 6.2691 1.1493 -1.2439 22 6 6.0935 0.5277 0.1675 23 6 2.2634 -1.0933 -0.0056 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8903 0.5133 26 1 -0.3633 0.8896 0.5143 27 1 1.9257 2.1222 0.0007 28 1 6.8992 -2.7647 0.5052 29 1 7.8433 -1.3445 1.0093 30 1 7.2679 -2.2177 -1.8064 31 1 8.8066 -2.3838 -0.9394 32 1 9.1010 -0.4279 -2.2552 33 1 8.6788 0.2116 -0.6451 34 1 6.7944 2.5923 -3.1470 35 1 6.7134 2.1407 -1.1552 36 1 5.2964 1.2290 -1.7295 37 1 5.1962 0.9424 0.6266 38 1 6.9558 0.7962 0.7777 39 1 1.9422 -2.1244 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980968523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 76.048689 kcal Electronic energy + Delta-G solvation = -23072.625845 eV Core-core repulsion = 19825.172062 eV Total energy + Delta-G solvation = -3247.453783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99362 -39.23876 -36.80399 -34.34658 -34.01031 -32.43982 -30.63231 -29.58215 -27.54357 -27.09241 -25.20115 -23.43280 -23.11359 -21.29571 -20.81829 -19.56559 -18.71887 -17.29643 -16.80026 -16.04012 -15.74152 -15.67783 -14.69546 -14.27556 -14.01480 -13.88989 -13.65376 -13.45279 -13.18546 -12.90322 -12.80189 -12.71776 -12.42230 -12.05094 -11.82320 -11.17607 -10.84461 -10.59118 -10.14865 -10.12341 -10.11118 -9.89852 -9.74513 -9.54678 -9.32187 -9.14067 -8.43868 -8.03755 -7.82605 -6.72730 -5.98304 -2.94861 1.87355 2.70100 2.74262 3.57420 3.63411 3.68222 3.79708 4.06042 4.54923 4.67393 4.75970 4.89054 4.91998 5.17038 5.24939 5.39397 5.57188 5.66437 5.70902 5.82771 5.93304 6.03013 6.15559 6.30335 6.30946 6.43275 6.52284 6.63947 6.83763 6.90652 6.97095 7.11826 7.24556 7.39228 7.51248 7.98889 8.18826 8.23957 8.72613 8.84051 9.32753 10.05190 10.45564 11.31113 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.008920 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.250972 B = 3138.359126 C = 4269.774458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.463 5.463 3 C 0.180 3.820 4 N -0.445 5.445 5 C -0.045 4.045 6 C 0.605 3.395 7 O -0.563 6.563 8 N -0.569 5.569 9 C 0.130 3.870 10 C -0.168 4.168 11 C 0.165 3.835 12 N -0.596 5.596 13 C -0.356 4.356 14 H 0.052 0.948 15 C -0.014 4.014 16 N -0.902 5.902 17 Si 1.041 2.959 18 H -0.288 1.288 19 H -0.297 1.297 20 H -0.294 1.294 21 C 0.149 3.851 22 C 0.075 3.925 23 C 0.022 3.978 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.209 0.791 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.023 0.977 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 -2.516 11.516 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.146 5.146 3 C -0.103 4.103 4 N -0.164 5.164 5 C -0.174 4.174 6 C 0.393 3.607 7 O -0.443 6.443 8 N -0.298 5.298 9 C 0.009 3.991 10 C -0.209 4.209 11 C 0.036 3.964 12 N -0.318 5.318 13 C -0.484 4.484 14 H 0.070 0.930 15 C -0.217 4.217 16 N -0.541 5.541 17 Si 0.872 3.128 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.221 1.221 21 C 0.023 3.977 22 C -0.050 4.050 23 C -0.116 4.116 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.226 0.774 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.064 0.936 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.234 -2.125 10.417 14.757 hybrid contribution 0.504 -0.945 0.733 1.298 sum -9.730 -3.070 11.150 15.113 Atomic orbital electron populations 1.22082 0.76365 1.04649 1.03908 1.45309 1.07898 1.06991 1.54412 1.25373 0.85548 0.93475 1.05877 1.70722 1.18129 1.10290 1.17218 1.20588 0.93122 0.90501 1.13190 1.16891 0.82028 0.85994 0.75808 1.90706 1.86828 1.14209 1.52544 1.47132 1.05345 1.07345 1.70019 1.20568 0.85527 0.95264 0.97772 1.21837 0.99383 1.01670 0.98048 1.20232 0.89705 0.90617 0.95808 1.43811 1.24627 1.56229 1.07146 1.19821 1.33772 1.07688 0.87162 0.92966 1.25427 1.01954 0.93256 1.01090 1.70784 1.37057 1.12604 1.33651 0.83876 0.77626 0.75290 0.76021 1.21351 1.22517 1.22131 1.22018 0.95649 0.91090 0.88928 1.22492 1.03030 0.79687 0.99822 1.22462 0.90275 0.92927 1.05893 0.90272 0.89606 0.89233 0.77419 0.90585 0.92215 0.91194 0.92833 0.93859 0.95195 0.92239 0.95926 0.90250 0.86634 0.93578 0.79903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.15 59.85 0.67 1.13 16 2 N -0.46 -5.58 3.13 -125.78 -0.39 -5.97 16 3 C 0.18 2.47 12.55 -89.90 -1.13 1.34 16 4 N -0.44 -8.06 6.95 -11.03 -0.08 -8.13 16 5 C -0.05 -0.86 6.65 -83.09 -0.55 -1.41 16 6 C 0.60 13.11 7.66 -12.57 -0.10 13.01 16 7 O -0.56 -13.14 16.36 5.25 0.09 -13.05 16 8 N -0.57 -11.80 2.46 -177.75 -0.44 -12.24 16 9 C 0.13 2.44 5.67 -5.91 -0.03 2.40 16 10 C -0.17 -3.38 5.64 -29.14 -0.16 -3.55 16 11 C 0.16 3.66 5.63 -5.24 -0.03 3.63 16 12 N -0.60 -15.52 2.44 -171.79 -0.42 -15.94 16 13 C -0.36 -10.44 9.07 -15.06 -0.14 -10.58 16 14 H 0.05 1.58 8.03 -52.49 -0.42 1.16 16 15 C -0.01 -0.42 4.35 -17.43 -0.08 -0.50 16 16 N -0.90 -27.55 12.57 55.49 0.70 -26.85 16 17 Si 1.04 26.90 30.04 -169.99 -5.11 21.79 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 C 0.15 3.64 5.05 -1.57 -0.01 3.63 16 22 C 0.08 1.52 4.84 -4.40 -0.02 1.50 16 23 C 0.02 0.34 11.27 -16.64 -0.19 0.15 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.21 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 29 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 30 H 0.07 1.67 7.91 -51.93 -0.41 1.26 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.98 8.02 -51.93 -0.42 0.57 16 33 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 34 H 0.27 8.24 7.01 -40.82 -0.29 7.95 16 35 H 0.02 0.58 7.42 -51.93 -0.39 0.19 16 36 H 0.08 2.19 6.09 -51.93 -0.32 1.87 16 37 H 0.12 2.26 4.75 -51.97 -0.25 2.01 16 38 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 39 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -36.73 313.25 -8.10 -44.83 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.40 Total: 0.09 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -1.77 Total: 10.76 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.63 Total: -69.14 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -5.11 Total: 21.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.73 -8.10 -44.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980968523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.876 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds