Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35851 * 126.13139 * 2 1 4 4 N 1.30178 * 109.00126 * 179.97438 * 3 2 1 5 5 C 1.35760 * 108.86686 * 0.02562 * 4 3 2 6 6 C 1.47324 * 126.23406 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99622 * 186.41484 * 6 5 4 8 8 N 1.34777 * 119.99964 * 6.42140 * 6 5 4 9 9 C 1.48211 * 119.96612 * 175.27276 * 8 6 5 10 10 C 1.47139 * 110.34400 * 102.46829 * 9 8 6 11 11 C 1.53787 * 111.84205 * 58.29332 * 10 9 8 12 12 N 1.43469 * 107.96121 * 281.66717 * 11 10 9 13 13 C 1.36935 * 118.93653 * 273.61405 * 12 11 10 14 14 H 1.07994 * 120.00373 * 21.08479 * 13 12 11 15 15 C 1.38816 * 119.99453 * 201.08390 * 13 12 11 16 16 N 1.31616 * 120.00056 * 35.52916 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 215.52169 * 15 13 12 18 18 H 1.48507 * 109.46992 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47167 * 60.00633 * 17 15 13 20 20 H 1.48506 * 109.47262 * 299.99941 * 17 15 13 21 21 C 1.48851 * 122.11886 * 93.88932 * 12 11 10 22 22 C 1.43621 * 119.96952 * 355.24224 * 8 6 5 23 23 C 1.35379 * 126.13804 * 180.29403 * 2 1 3 24 24 H 1.09002 * 109.46889 * 89.97452 * 1 2 3 25 25 H 1.09003 * 109.46782 * 209.96605 * 1 2 3 26 26 H 1.08990 * 109.47279 * 329.96808 * 1 2 3 27 27 H 1.08000 * 125.50158 * 0.04249 * 3 2 1 28 28 H 1.09001 * 109.32541 * 342.19327 * 9 8 6 29 29 H 1.09006 * 109.18152 * 222.63964 * 9 8 6 30 30 H 1.08998 * 109.00318 * 297.68332 * 10 9 8 31 31 H 1.08998 * 109.00600 * 178.90199 * 10 9 8 32 32 H 1.09000 * 109.76475 * 162.05317 * 11 10 9 33 33 H 1.09000 * 109.80797 * 41.30596 * 11 10 9 34 34 H 0.96999 * 120.00129 * 5.76506 * 16 15 13 35 35 H 1.09002 * 109.48572 * 80.35040 * 21 12 11 36 36 H 1.09006 * 109.48241 * 200.38319 * 21 12 11 37 37 H 1.08995 * 108.87065 * 31.47387 * 22 8 6 38 38 H 1.08994 * 108.86973 * 149.90729 * 22 8 6 39 39 H 1.07999 * 126.56330 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2660 1.0972 0.0000 4 7 3.5101 0.7138 0.0006 5 6 3.5512 -0.6432 0.0003 6 6 4.7654 -1.4776 0.0003 7 8 4.6737 -2.6846 -0.1176 8 7 5.9777 -0.9033 0.1310 9 6 7.1901 -1.7493 0.2362 10 6 7.9104 -1.7727 -1.0466 11 6 8.3181 -0.3608 -1.4997 12 7 7.1599 0.2768 -2.0567 13 6 6.8677 0.0807 -3.3801 14 1 7.2680 -0.7769 -3.9002 15 6 6.0569 0.9845 -4.0530 16 7 6.1225 2.2674 -3.7667 17 14 4.8727 0.3797 -5.3650 18 1 4.1274 1.5338 -5.9291 19 1 3.9149 -0.5816 -4.7621 20 1 5.6348 -0.2935 -6.4473 21 6 6.2691 1.1493 -1.2439 22 6 6.0935 0.5277 0.1675 23 6 2.2634 -1.0933 -0.0056 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3633 -0.8903 0.5133 26 1 -0.3633 0.8896 0.5143 27 1 1.9257 2.1222 0.0007 28 1 6.8992 -2.7647 0.5052 29 1 7.8433 -1.3445 1.0093 30 1 7.2679 -2.2177 -1.8064 31 1 8.8066 -2.3838 -0.9394 32 1 9.1010 -0.4279 -2.2552 33 1 8.6788 0.2116 -0.6451 34 1 6.7944 2.5923 -3.1470 35 1 6.7134 2.1407 -1.1552 36 1 5.2964 1.2290 -1.7295 37 1 5.1962 0.9424 0.6266 38 1 6.9558 0.7962 0.7777 39 1 1.9422 -2.1244 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980968523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = 52.978116 kcal Electronic energy + Delta-G solvation = -23073.626260 eV Core-core repulsion = 19825.172062 eV Total energy + Delta-G solvation = -3248.454198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.12284 -40.82595 -38.59915 -36.09731 -35.25178 -34.07345 -32.64555 -30.79370 -29.18345 -28.16682 -26.90993 -25.39868 -24.63565 -22.59520 -22.05753 -21.44960 -20.11814 -19.25820 -18.23415 -17.55482 -17.19217 -16.78906 -16.23754 -16.00498 -15.75896 -15.44590 -15.10225 -14.99082 -14.65495 -14.38843 -14.24179 -13.88614 -13.67684 -13.52529 -13.36643 -12.85211 -12.81857 -12.55867 -12.06480 -12.00787 -11.87709 -11.81474 -11.37228 -11.22471 -10.68971 -10.54943 -10.23083 -9.74731 -9.37987 -8.85801 -8.27394 -5.21787 0.61903 1.47300 1.50550 1.54366 1.74001 1.80730 2.24037 2.59817 2.62570 3.13714 3.45784 3.71151 3.85929 4.01519 4.03440 4.19389 4.22681 4.30111 4.45189 4.47555 4.51347 4.57079 4.70942 4.76608 4.78871 4.94599 5.05442 5.11270 5.12070 5.17548 5.38098 5.44519 5.58675 5.82547 5.90677 6.20044 6.41810 6.55896 6.89238 7.15922 7.28702 7.89846 8.27938 8.98038 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.008920 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.250972 B = 3138.359126 C = 4269.774458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.452 5.452 3 C 0.188 3.812 4 N -0.487 5.487 5 C -0.097 4.097 6 C 0.592 3.408 7 O -0.594 6.594 8 N -0.576 5.576 9 C 0.126 3.874 10 C -0.152 4.152 11 C 0.159 3.841 12 N -0.610 5.610 13 C -0.362 4.362 14 H 0.033 0.967 15 C -0.059 4.059 16 N -0.918 5.918 17 Si 1.087 2.913 18 H -0.282 1.282 19 H -0.301 1.301 20 H -0.278 1.278 21 C 0.160 3.840 22 C 0.089 3.911 23 C 0.036 3.964 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.247 0.753 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.255 0.745 35 H 0.009 0.991 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 -2.445 12.665 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.133 5.133 3 C -0.096 4.096 4 N -0.207 5.207 5 C -0.224 4.224 6 C 0.382 3.618 7 O -0.477 6.477 8 N -0.305 5.305 9 C 0.005 3.995 10 C -0.193 4.193 11 C 0.032 3.968 12 N -0.333 5.333 13 C -0.492 4.492 14 H 0.051 0.949 15 C -0.258 4.258 16 N -0.559 5.559 17 Si 0.915 3.085 18 H -0.208 1.208 19 H -0.229 1.229 20 H -0.204 1.204 21 C 0.035 3.965 22 C -0.036 4.036 23 C -0.105 4.105 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.263 0.737 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.730 -2.053 11.586 16.614 hybrid contribution 0.918 -0.968 0.393 1.390 sum -10.812 -3.021 11.979 16.417 Atomic orbital electron populations 1.22531 0.72655 1.07231 1.05215 1.45592 1.09896 1.05470 1.52296 1.26071 0.84727 0.95206 1.03578 1.70519 1.20912 1.10000 1.19222 1.20511 0.93486 0.91218 1.17213 1.17433 0.83161 0.86108 0.75065 1.90656 1.87451 1.15441 1.54118 1.47293 1.05865 1.07526 1.69769 1.20732 0.85394 0.95611 0.97812 1.21632 1.00081 1.00192 0.97377 1.20411 0.88352 0.91771 0.96241 1.44015 1.26203 1.56686 1.06414 1.19919 1.33914 1.06563 0.88829 0.94905 1.26499 1.03127 0.93096 1.03030 1.70884 1.37353 1.13122 1.34508 0.83210 0.75936 0.74865 0.74523 1.20775 1.22928 1.20435 1.21824 0.93332 0.90624 0.90736 1.22312 1.04644 0.79547 0.97113 1.22704 0.89630 0.94389 1.03780 0.89491 0.87679 0.86202 0.73669 0.90515 0.88537 0.95764 0.89310 0.94924 0.92690 0.93586 0.97359 0.93689 0.85563 0.91281 0.78324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 11.15 127.77 1.42 2.00 16 2 N -0.45 -9.71 3.13 -551.84 -1.73 -11.44 16 3 C 0.19 4.77 12.55 180.10 2.26 7.03 16 4 N -0.49 -17.41 6.95 -188.81 -1.31 -18.72 16 5 C -0.10 -3.69 6.65 40.50 0.27 -3.42 16 6 C 0.59 25.99 7.66 86.63 0.66 26.65 16 7 O -0.59 -28.27 16.36 -4.11 -0.07 -28.34 16 8 N -0.58 -23.73 2.46 -834.51 -2.05 -25.78 16 9 C 0.13 4.53 5.67 84.23 0.48 5.01 16 10 C -0.15 -6.02 5.64 29.04 0.16 -5.86 16 11 C 0.16 7.03 5.63 87.21 0.49 7.52 16 12 N -0.61 -32.34 2.44 -697.42 -1.70 -34.05 16 13 C -0.36 -21.85 9.07 84.03 0.76 -21.09 16 14 H 0.03 2.07 8.03 -2.91 -0.02 2.04 16 15 C -0.06 -3.52 4.35 84.86 0.37 -3.16 16 16 N -0.92 -57.17 12.57 21.65 0.27 -56.90 16 17 Si 1.09 55.27 30.04 68.60 2.06 57.33 16 18 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 C 0.16 7.97 5.05 86.68 0.44 8.41 16 22 C 0.09 3.57 4.84 87.67 0.42 3.99 16 23 C 0.04 1.06 11.27 83.72 0.94 2.00 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.25 3.93 8.06 -2.91 -0.02 3.90 16 28 H 0.08 2.78 7.18 -2.39 -0.02 2.76 16 29 H 0.10 2.79 8.05 -2.38 -0.02 2.77 16 30 H 0.02 1.16 7.91 -2.39 -0.02 1.14 16 31 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.03 1.49 8.02 -2.39 -0.02 1.47 16 33 H 0.05 2.14 7.59 -2.39 -0.02 2.13 16 34 H 0.25 16.14 7.01 -92.71 -0.65 15.49 16 35 H 0.01 0.44 7.42 -2.39 -0.02 0.42 16 36 H 0.04 2.54 6.09 -2.38 -0.01 2.53 16 37 H 0.13 4.90 4.75 -2.47 -0.01 4.89 16 38 H 0.07 2.42 7.73 -2.39 -0.02 2.40 16 39 H 0.20 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -83.30 313.25 5.33 -77.97 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.17 Total: 10.85 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 8.69 Total: 29.08 kcal Atomic # 7 Polarization: -140.37 SS G_CDS: -6.52 Total: -146.89 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.07 Total: -28.34 kcal Atomic # 14 Polarization: 55.27 SS G_CDS: 2.06 Total: 57.33 kcal Total: -83.30 5.33 -77.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980968523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.948 kcal (2) G-P(sol) polarization free energy of solvation -83.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds