Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00002 * 2 1 4 4 O 1.21627 * 119.99784 * 174.24534 * 3 2 1 5 5 C 1.47322 * 120.00069 * 354.24229 * 3 2 1 6 6 C 1.36422 * 126.23802 * 173.95450 * 5 3 2 7 7 N 1.35376 * 106.86982 * 179.97438 * 6 5 3 8 8 C 1.46502 * 126.12861 * 180.02562 * 7 6 5 9 9 C 1.35845 * 107.73000 * 359.97438 * 7 6 5 10 10 N 1.30164 * 109.00712 * 359.76448 * 9 7 6 11 11 C 1.46503 * 120.00055 * 179.73185 * 2 1 3 12 12 C 1.53772 * 113.61629 * 39.40397 * 11 2 1 13 13 C 1.53952 * 87.02364 * 220.05053 * 12 11 2 14 14 N 1.46497 * 113.74552 * 139.94378 * 13 12 11 15 15 C 1.36931 * 120.00204 * 107.40372 * 14 13 12 16 16 H 1.08003 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99862 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47495 * 89.99428 * 19 17 15 21 21 H 1.48498 * 109.47048 * 209.99633 * 19 17 15 22 22 H 1.48502 * 109.46731 * 329.99303 * 19 17 15 23 23 C 1.53783 * 113.61059 * 301.79772 * 11 2 1 24 24 H 1.08994 * 109.47465 * 85.35029 * 1 2 3 25 25 H 1.09002 * 109.46769 * 205.35337 * 1 2 3 26 26 H 1.09002 * 109.46789 * 325.34987 * 1 2 3 27 27 H 1.07996 * 126.56019 * 359.94862 * 6 5 3 28 28 H 1.09002 * 109.47198 * 90.00242 * 8 7 6 29 29 H 1.09007 * 109.46714 * 209.99453 * 8 7 6 30 30 H 1.08990 * 109.47290 * 329.99675 * 8 7 6 31 31 H 1.08006 * 125.49629 * 179.97438 * 9 7 6 32 32 H 1.08999 * 112.84881 * 170.60361 * 11 2 1 33 33 H 1.08998 * 113.61638 * 334.57228 * 12 11 2 34 34 H 1.09009 * 113.61381 * 105.47394 * 12 11 2 35 35 H 1.08999 * 113.53858 * 270.81233 * 13 12 11 36 36 H 0.97000 * 119.99693 * 287.40630 * 14 13 12 37 37 H 0.97005 * 119.99784 * 180.02562 * 18 17 15 38 38 H 1.09004 * 113.61463 * 254.53206 * 23 11 2 39 39 H 1.08992 * 113.61561 * 25.43694 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 0.1056 5 6 1.4078 2.4399 -0.1280 6 6 1.9428 3.6908 -0.0279 7 7 0.9276 4.5679 -0.2088 8 6 1.0340 6.0289 -0.1861 9 6 -0.2070 3.8503 -0.4164 10 7 0.0801 2.5815 -0.3736 11 6 2.1975 -1.2687 0.0059 12 6 1.5627 -2.3507 -0.8834 13 6 1.9065 -3.3552 0.2315 14 7 0.8595 -4.3513 0.4715 15 6 1.0448 -5.6487 0.0746 16 1 1.9631 -5.9377 -0.4151 17 6 0.0529 -6.5927 0.3025 18 7 0.2309 -7.8396 -0.0796 19 14 -1.5350 -6.0931 1.1500 20 1 -2.5256 -5.6621 0.1311 21 1 -2.0762 -7.2494 1.9085 22 1 -1.2654 -4.9707 2.0842 23 6 1.8624 -2.1678 1.2078 24 1 -0.3634 0.0833 -1.0242 25 1 -0.3633 -0.9287 0.4401 26 1 -0.3633 0.8454 0.5843 27 1 2.9780 3.9346 0.1602 28 1 1.2427 6.3937 -1.1918 29 1 0.0956 6.4560 0.1678 30 1 1.8425 6.3240 0.4826 31 1 -1.1883 4.2657 -0.5923 32 1 3.2673 -1.1405 -0.1587 33 1 0.4917 -2.2175 -1.0360 34 1 2.1051 -2.5258 -1.8126 35 1 2.8968 -3.7986 0.1277 36 1 0.0349 -4.0919 0.9116 37 1 -0.4624 -8.4992 0.0794 38 1 2.6465 -2.1953 1.9645 39 1 0.8736 -1.9845 1.6279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998624579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = 81.253764 kcal Electronic energy + Delta-G solvation = -21268.355534 eV Core-core repulsion = 18021.127460 eV Total energy + Delta-G solvation = -3247.228074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.44756 -39.79167 -37.84478 -34.91778 -34.25949 -32.90921 -30.52794 -30.00223 -27.72698 -26.75054 -25.15438 -24.83091 -23.20618 -21.69536 -21.20687 -19.52377 -18.88366 -17.59989 -17.33875 -16.61486 -16.25018 -15.88832 -15.07268 -14.81832 -14.58496 -14.22500 -14.05139 -13.72939 -13.35979 -13.29645 -12.93524 -12.75880 -12.64225 -12.08513 -12.04357 -11.77783 -11.64959 -10.94236 -10.62400 -10.42726 -10.33504 -10.10197 -10.08650 -9.97319 -9.71808 -9.51666 -8.92006 -8.86598 -8.25896 -7.23304 -5.74798 -3.10155 1.40505 2.21961 2.28727 3.24827 3.39893 3.42620 3.47510 3.52312 4.18175 4.18538 4.45903 4.55281 4.61208 4.82225 4.83715 5.13184 5.16680 5.23733 5.35694 5.47402 5.50635 5.70108 5.74259 5.82683 5.88434 6.03783 6.19112 6.24230 6.28657 6.33288 6.48359 6.58306 6.69942 6.85468 7.04268 7.50254 7.68348 8.02130 8.35632 8.45028 9.22656 9.95249 10.15378 11.43485 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003445 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.350220 B = 8126.583397 C = 8662.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.585 5.585 3 C 0.598 3.402 4 O -0.553 6.553 5 C -0.055 4.055 6 C 0.029 3.971 7 N -0.463 5.463 8 C 0.070 3.930 9 C 0.179 3.821 10 N -0.456 5.456 11 C 0.118 3.882 12 C -0.173 4.173 13 C 0.175 3.825 14 N -0.734 5.734 15 C -0.246 4.246 16 H 0.092 0.908 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.165 4.165 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.187 0.813 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.210 0.790 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 30.537 0.330 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.315 5.315 3 C 0.385 3.615 4 O -0.431 6.431 5 C -0.184 4.184 6 C -0.109 4.109 7 N -0.145 5.145 8 C -0.072 4.072 9 C -0.105 4.105 10 N -0.175 5.175 11 C 0.014 3.986 12 C -0.215 4.215 13 C 0.063 3.937 14 N -0.374 5.374 15 C -0.376 4.376 16 H 0.110 0.890 17 C -0.192 4.192 18 N -0.581 5.581 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.204 0.796 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.227 0.773 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.438 29.729 0.192 29.733 hybrid contribution -0.894 1.066 0.604 1.517 sum -1.332 30.795 0.796 30.834 Atomic orbital electron populations 1.21898 0.78517 1.02624 1.02466 1.47645 1.07574 1.05194 1.71068 1.16992 0.85949 0.82171 0.76350 1.90765 1.13328 1.87077 1.51947 1.20639 0.90993 0.93513 1.13273 1.22590 0.94769 0.88901 1.04682 1.45359 1.08588 1.08030 1.52494 1.22137 1.04906 0.76086 1.04059 1.25324 0.92523 0.86989 1.05615 1.70874 1.13114 1.16178 1.17371 1.22597 0.97361 0.80368 0.98249 1.24307 1.01254 0.96403 0.99556 1.21361 0.93585 0.86715 0.91999 1.42707 1.16859 1.06883 1.70947 1.19154 1.03098 0.83461 1.31864 0.89039 1.24692 0.98183 0.95365 1.00944 1.69707 1.34503 1.01584 1.52314 0.86550 0.84893 0.77437 0.79690 1.21034 1.21751 1.20285 1.23943 1.01834 0.97205 0.97568 0.92511 0.91603 0.89676 0.79581 0.90118 0.89051 0.89312 0.77308 0.86689 0.89922 0.91713 0.89456 0.80495 0.93067 0.91411 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 7.98 59.84 0.48 1.70 16 2 N -0.59 -9.19 3.08 -174.31 -0.54 -9.73 16 3 C 0.60 9.64 7.66 -12.56 -0.10 9.55 16 4 O -0.55 -10.16 16.39 5.25 0.09 -10.07 16 5 C -0.06 -0.73 6.58 -83.09 -0.55 -1.28 16 6 C 0.03 0.29 11.27 -16.64 -0.19 0.10 16 7 N -0.46 -3.20 3.13 -125.78 -0.39 -3.60 16 8 C 0.07 0.15 11.15 59.85 0.67 0.81 16 9 C 0.18 1.42 12.55 -89.92 -1.13 0.29 16 10 N -0.46 -5.43 8.06 -11.03 -0.09 -5.52 16 11 C 0.12 1.93 4.19 -67.12 -0.28 1.65 16 12 C -0.17 -3.06 7.32 -25.83 -0.19 -3.25 16 13 C 0.18 3.46 4.48 -67.03 -0.30 3.16 16 14 N -0.73 -17.59 5.21 -52.55 -0.27 -17.86 16 15 C -0.25 -7.00 10.45 -15.06 -0.16 -7.15 16 16 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 17 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 18 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 19 Si 0.88 22.26 27.74 -169.99 -4.71 17.55 16 20 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 23 C -0.17 -2.81 7.35 -25.92 -0.19 -3.00 16 24 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 25 H 0.07 0.93 6.14 -51.93 -0.32 0.61 16 26 H 0.08 1.14 5.89 -51.93 -0.31 0.83 16 27 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.12 1.94 7.25 -51.93 -0.38 1.56 16 33 H 0.08 1.48 6.72 -51.93 -0.35 1.13 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 36 H 0.36 8.50 5.79 -40.82 -0.24 8.26 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.34 6.84 -51.93 -0.36 0.99 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -36.09 322.83 -7.65 -43.74 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.34 Total: 6.82 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.03 Total: 2.60 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.52 Total: -65.50 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.09 -7.65 -43.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998624579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.990 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds