Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00002 * 2 1 4 4 O 1.21627 * 119.99784 * 174.24534 * 3 2 1 5 5 C 1.47322 * 120.00069 * 354.24229 * 3 2 1 6 6 C 1.36422 * 126.23802 * 173.95450 * 5 3 2 7 7 N 1.35376 * 106.86982 * 179.97438 * 6 5 3 8 8 C 1.46502 * 126.12861 * 180.02562 * 7 6 5 9 9 C 1.35845 * 107.73000 * 359.97438 * 7 6 5 10 10 N 1.30164 * 109.00712 * 359.76448 * 9 7 6 11 11 C 1.46503 * 120.00055 * 179.73185 * 2 1 3 12 12 C 1.53772 * 113.61629 * 39.40397 * 11 2 1 13 13 C 1.53952 * 87.02364 * 220.05053 * 12 11 2 14 14 N 1.46497 * 113.74552 * 139.94378 * 13 12 11 15 15 C 1.36931 * 120.00204 * 107.40372 * 14 13 12 16 16 H 1.08003 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99862 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47495 * 89.99428 * 19 17 15 21 21 H 1.48498 * 109.47048 * 209.99633 * 19 17 15 22 22 H 1.48502 * 109.46731 * 329.99303 * 19 17 15 23 23 C 1.53783 * 113.61059 * 301.79772 * 11 2 1 24 24 H 1.08994 * 109.47465 * 85.35029 * 1 2 3 25 25 H 1.09002 * 109.46769 * 205.35337 * 1 2 3 26 26 H 1.09002 * 109.46789 * 325.34987 * 1 2 3 27 27 H 1.07996 * 126.56019 * 359.94862 * 6 5 3 28 28 H 1.09002 * 109.47198 * 90.00242 * 8 7 6 29 29 H 1.09007 * 109.46714 * 209.99453 * 8 7 6 30 30 H 1.08990 * 109.47290 * 329.99675 * 8 7 6 31 31 H 1.08006 * 125.49629 * 179.97438 * 9 7 6 32 32 H 1.08999 * 112.84881 * 170.60361 * 11 2 1 33 33 H 1.08998 * 113.61638 * 334.57228 * 12 11 2 34 34 H 1.09009 * 113.61381 * 105.47394 * 12 11 2 35 35 H 1.08999 * 113.53858 * 270.81233 * 13 12 11 36 36 H 0.97000 * 119.99693 * 287.40630 * 14 13 12 37 37 H 0.97005 * 119.99784 * 180.02562 * 18 17 15 38 38 H 1.09004 * 113.61463 * 254.53206 * 23 11 2 39 39 H 1.08992 * 113.61561 * 25.43694 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 0.1056 5 6 1.4078 2.4399 -0.1280 6 6 1.9428 3.6908 -0.0279 7 7 0.9276 4.5679 -0.2088 8 6 1.0340 6.0289 -0.1861 9 6 -0.2070 3.8503 -0.4164 10 7 0.0801 2.5815 -0.3736 11 6 2.1975 -1.2687 0.0059 12 6 1.5627 -2.3507 -0.8834 13 6 1.9065 -3.3552 0.2315 14 7 0.8595 -4.3513 0.4715 15 6 1.0448 -5.6487 0.0746 16 1 1.9631 -5.9377 -0.4151 17 6 0.0529 -6.5927 0.3025 18 7 0.2309 -7.8396 -0.0796 19 14 -1.5350 -6.0931 1.1500 20 1 -2.5256 -5.6621 0.1311 21 1 -2.0762 -7.2494 1.9085 22 1 -1.2654 -4.9707 2.0842 23 6 1.8624 -2.1678 1.2078 24 1 -0.3634 0.0833 -1.0242 25 1 -0.3633 -0.9287 0.4401 26 1 -0.3633 0.8454 0.5843 27 1 2.9780 3.9346 0.1602 28 1 1.2427 6.3937 -1.1918 29 1 0.0956 6.4560 0.1678 30 1 1.8425 6.3240 0.4826 31 1 -1.1883 4.2657 -0.5923 32 1 3.2673 -1.1405 -0.1587 33 1 0.4917 -2.2175 -1.0360 34 1 2.1051 -2.5258 -1.8126 35 1 2.8968 -3.7986 0.1277 36 1 0.0349 -4.0919 0.9116 37 1 -0.4624 -8.4992 0.0794 38 1 2.6465 -2.1953 1.9645 39 1 0.8736 -1.9845 1.6279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998624579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = 57.284136 kcal Electronic energy + Delta-G solvation = -21269.394935 eV Core-core repulsion = 18021.127460 eV Total energy + Delta-G solvation = -3248.267475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.13187 -41.08733 -39.23402 -36.27716 -35.25188 -34.48883 -32.54210 -30.77961 -28.26387 -27.88914 -26.63785 -26.31634 -24.67924 -22.83273 -22.05653 -20.86943 -20.21155 -19.32737 -18.39194 -17.88690 -16.95306 -16.92375 -16.48271 -16.09108 -15.83486 -15.61335 -14.98094 -14.77921 -14.66391 -14.37737 -14.10685 -13.71474 -13.59038 -13.51745 -13.43756 -13.26233 -13.05280 -12.81742 -12.28545 -12.06418 -11.80959 -11.78383 -11.54983 -11.26141 -10.91733 -10.82787 -10.62401 -9.78527 -9.44388 -9.26854 -8.01201 -5.34974 0.56881 1.39444 1.43191 1.47631 1.50279 1.75774 2.14815 2.49794 2.50032 3.28315 3.40184 3.60957 3.75416 3.81344 3.86982 4.01932 4.06248 4.21106 4.22291 4.40604 4.46453 4.50302 4.72916 4.78295 4.79880 4.83686 4.87237 5.01681 5.06135 5.11507 5.12816 5.41373 5.47062 5.66935 5.78439 6.14967 6.23415 6.45974 6.82537 7.07960 7.20095 7.83738 8.04283 9.20283 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003445 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.350220 B = 8126.583397 C = 8662.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.589 5.589 3 C 0.591 3.409 4 O -0.587 6.587 5 C -0.098 4.098 6 C 0.040 3.960 7 N -0.454 5.454 8 C 0.063 3.937 9 C 0.192 3.808 10 N -0.491 5.491 11 C 0.129 3.871 12 C -0.162 4.162 13 C 0.159 3.841 14 N -0.737 5.737 15 C -0.234 4.234 16 H 0.058 0.942 17 C -0.066 4.066 18 N -0.984 5.984 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.251 1.251 23 C -0.149 4.149 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.198 0.802 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.099 0.901 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 34.356 1.046 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.318 5.318 3 C 0.381 3.619 4 O -0.468 6.468 5 C -0.225 4.225 6 C -0.102 4.102 7 N -0.134 5.134 8 C -0.077 4.077 9 C -0.092 4.092 10 N -0.211 5.211 11 C 0.025 3.975 12 C -0.204 4.204 13 C 0.049 3.951 14 N -0.378 5.378 15 C -0.365 4.365 16 H 0.076 0.924 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.175 1.175 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.215 0.785 28 H 0.112 0.888 29 H 0.135 0.865 30 H 0.118 0.882 31 H 0.267 0.733 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.145 33.643 0.909 33.723 hybrid contribution -0.278 0.035 0.312 0.419 sum -2.423 33.678 1.221 33.787 Atomic orbital electron populations 1.21897 0.77385 1.02823 1.02556 1.47687 1.08214 1.04796 1.71150 1.17479 0.85813 0.83177 0.75393 1.90726 1.14752 1.87714 1.53616 1.20372 0.92100 0.93081 1.16977 1.22763 0.95817 0.88559 1.03056 1.45636 1.07404 1.09678 1.50692 1.22527 1.06902 0.72929 1.05377 1.26102 0.94013 0.86081 1.03051 1.70746 1.12529 1.18665 1.19128 1.22316 0.97104 0.80857 0.97255 1.24129 1.01432 0.95856 0.98967 1.21600 0.92285 0.86793 0.94409 1.42647 1.18094 1.05878 1.71175 1.19107 1.01605 0.85454 1.30345 0.92436 1.25539 1.02311 0.95266 1.02577 1.69895 1.35932 1.03068 1.54590 0.85388 0.79862 0.77552 0.78880 1.20254 1.22329 1.17510 1.23792 1.02556 0.95175 0.97409 0.92599 0.91741 0.88863 0.78498 0.88836 0.86464 0.88238 0.73291 0.87272 0.89763 0.91792 0.90281 0.79902 0.93348 0.90585 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.55 7.98 127.77 1.02 3.57 16 2 N -0.59 -18.13 3.08 -823.64 -2.54 -20.67 16 3 C 0.59 18.95 7.66 86.63 0.66 19.61 16 4 O -0.59 -21.76 16.39 -4.12 -0.07 -21.82 16 5 C -0.10 -2.48 6.58 40.50 0.27 -2.22 16 6 C 0.04 0.71 11.27 83.72 0.94 1.66 16 7 N -0.45 -4.78 3.13 -551.85 -1.73 -6.50 16 8 C 0.06 0.00 11.15 127.77 1.42 1.43 16 9 C 0.19 2.40 12.55 180.10 2.26 4.66 16 10 N -0.49 -10.72 8.06 -188.81 -1.52 -12.25 16 11 C 0.13 4.18 4.19 45.51 0.19 4.37 16 12 C -0.16 -5.66 7.32 31.18 0.23 -5.43 16 13 C 0.16 6.24 4.48 45.58 0.20 6.45 16 14 N -0.74 -34.94 5.21 -320.17 -1.67 -36.61 16 15 C -0.23 -13.57 10.45 84.04 0.88 -12.69 16 16 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 18 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 19 Si 0.96 45.87 27.74 68.60 1.90 47.77 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 23 C -0.15 -4.92 7.35 31.12 0.23 -4.69 16 24 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 25 H 0.06 1.71 6.14 -2.39 -0.01 1.69 16 26 H 0.09 2.36 5.89 -2.39 -0.01 2.35 16 27 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.12 -0.54 8.14 -2.38 -0.02 -0.56 16 30 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.11 3.70 7.25 -2.39 -0.02 3.69 16 33 H 0.08 2.93 6.72 -2.39 -0.02 2.91 16 34 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.08 3.22 8.10 -2.39 -0.02 3.20 16 36 H 0.37 16.56 5.79 -92.71 -0.54 16.03 16 37 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 38 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.09 2.75 6.84 -2.39 -0.02 2.74 16 Total: -1.00 -80.40 322.83 3.93 -76.47 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.47 Total: 24.09 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 8.77 Total: 13.26 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -7.15 Total: -139.77 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Total: -80.40 3.93 -76.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998624579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.758 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds