Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35848 * 126.13656 * 2 1 4 4 N 1.30172 * 109.00137 * 179.82075 * 3 2 1 5 5 C 1.35756 * 108.86454 * 0.44726 * 4 3 2 6 6 C 1.47328 * 126.23221 * 179.71734 * 5 4 3 7 7 O 1.21622 * 120.00055 * 180.02562 * 6 5 4 8 8 N 1.34784 * 119.99878 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99539 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46596 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47498 * 65.00082 * 10 9 8 12 12 N 1.46507 * 109.47078 * 304.99943 * 10 9 8 13 13 C 1.36939 * 119.99791 * 155.00383 * 12 10 9 14 14 H 1.07998 * 119.99937 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99546 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00300 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99536 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46998 * 60.00761 * 17 15 13 19 19 H 1.48501 * 109.46577 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47282 * 300.00128 * 17 15 13 21 21 C 1.53004 * 109.46966 * 185.00212 * 10 9 8 22 22 C 1.52997 * 117.49714 * 248.74608 * 21 10 9 23 23 C 1.53001 * 117.49957 * 180.08595 * 21 10 9 24 24 C 1.35379 * 126.13284 * 180.31744 * 2 1 3 25 25 H 1.08999 * 109.46892 * 269.68806 * 1 2 3 26 26 H 1.09000 * 109.46803 * 29.67979 * 1 2 3 27 27 H 1.09000 * 109.47214 * 149.68772 * 1 2 3 28 28 H 1.08003 * 125.49812 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99913 * 359.97438 * 8 6 5 30 30 H 1.08996 * 109.46915 * 299.99939 * 9 8 6 31 31 H 1.08993 * 109.46987 * 60.00124 * 9 8 6 32 32 H 0.96999 * 119.99842 * 334.99914 * 12 10 9 33 33 H 0.96996 * 120.00209 * 179.97438 * 16 15 13 34 34 H 1.08995 * 115.54856 * 34.41473 * 21 10 9 35 35 H 1.09000 * 117.49956 * 359.97438 * 22 21 10 36 36 H 1.08995 * 117.50042 * 145.02418 * 22 21 10 37 37 H 1.08994 * 117.49652 * 214.97700 * 23 21 10 38 38 H 1.09004 * 117.49546 * 359.97215 * 23 21 10 39 39 H 1.07995 * 126.56474 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2662 1.0971 0.0000 4 7 3.5101 0.7136 0.0039 5 6 3.5511 -0.6433 -0.0036 6 6 4.7653 -1.4778 -0.0083 7 8 4.6698 -2.6903 -0.0153 8 7 5.9818 -0.8976 -0.0047 9 6 7.1891 -1.7275 -0.0088 10 6 8.4264 -0.8276 -0.0028 11 1 8.4643 -0.2680 0.9318 12 7 8.3560 0.1069 -1.1290 13 6 9.0217 1.3021 -1.0695 14 1 9.5990 1.5556 -0.1926 15 6 8.9554 2.1873 -2.1367 16 7 8.2524 1.8781 -3.2056 17 14 9.8630 3.8180 -2.0553 18 1 11.3169 3.5674 -1.8869 19 1 9.6330 4.5756 -3.3116 20 1 9.3599 4.6075 -0.9025 21 6 9.6842 -1.6890 -0.1329 22 6 10.6080 -1.7784 1.0834 23 6 11.0348 -0.9702 -0.1445 24 6 2.2633 -1.0934 -0.0061 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 0.8929 -0.5089 27 1 -0.3633 -0.8872 -0.5187 28 1 1.9259 2.1222 -0.0004 29 1 6.0579 0.0694 0.0006 30 1 7.1971 -2.3615 0.8777 31 1 7.1978 -2.3518 -0.9021 32 1 7.8379 -0.1210 -1.9167 33 1 8.2057 2.4968 -3.9511 34 1 9.5823 -2.5789 -0.7540 35 1 10.3200 -1.2232 1.9761 36 1 11.1143 -2.7269 1.2622 37 1 11.8215 -1.3874 -0.7730 38 1 11.0272 0.1166 -0.0600 39 1 1.9421 -2.1244 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566708708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 64.392521 kcal Electronic energy + Delta-G solvation = -21276.721294 eV Core-core repulsion = 18028.762062 eV Total energy + Delta-G solvation = -3247.959232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09258 -38.88525 -37.37273 -34.50332 -34.15839 -33.19735 -30.82722 -29.75744 -28.19356 -27.07226 -24.02356 -22.97027 -21.78286 -21.58897 -21.06265 -19.89223 -19.30299 -17.88317 -17.07081 -15.93911 -15.86301 -15.51256 -15.03811 -14.64187 -14.38403 -14.16031 -13.79974 -13.68894 -13.43344 -13.07390 -13.02024 -12.92783 -12.65787 -11.93377 -11.28301 -11.05977 -10.79240 -10.76996 -10.61647 -10.17068 -10.06899 -9.84328 -9.77495 -9.71650 -9.40713 -9.20472 -8.87305 -8.66851 -8.32963 -6.93416 -5.70417 -2.99480 1.71371 2.56966 2.58038 3.47528 3.52217 3.52721 3.78854 3.92679 4.43414 4.49596 4.57401 4.68332 4.74638 4.77886 5.03531 5.28866 5.33917 5.52326 5.59681 5.62665 5.70312 5.86304 6.00178 6.01168 6.11690 6.16020 6.26614 6.47493 6.54337 6.62720 6.70605 6.87085 6.98538 7.05526 7.09954 7.74247 7.82723 8.24820 8.46146 8.77272 9.58192 10.13229 10.49357 11.51533 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.004996 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.873317 B = 5602.861714 C = 7156.039391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.465 5.465 3 C 0.181 3.819 4 N -0.451 5.451 5 C -0.053 4.053 6 C 0.598 3.402 7 O -0.563 6.563 8 N -0.696 5.696 9 C 0.119 3.881 10 C 0.193 3.807 11 H 0.055 0.945 12 N -0.715 5.715 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.928 5.928 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.286 1.286 21 C -0.158 4.158 22 C -0.197 4.197 23 C -0.156 4.156 24 C 0.024 3.976 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.210 0.790 29 H 0.419 0.581 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 -4.504 7.933 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.148 5.148 3 C -0.103 4.103 4 N -0.169 5.169 5 C -0.183 4.183 6 C 0.384 3.616 7 O -0.443 6.443 8 N -0.346 5.346 9 C -0.006 4.006 10 C 0.082 3.918 11 H 0.073 0.927 12 N -0.356 5.356 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.734 3.266 18 H -0.214 1.214 19 H -0.219 1.219 20 H -0.213 1.213 21 C -0.180 4.180 22 C -0.235 4.235 23 C -0.193 4.193 24 C -0.115 4.115 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.227 0.773 29 H 0.257 0.743 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.056 -4.647 7.953 15.978 hybrid contribution -0.324 0.854 -0.446 1.016 sum -13.380 -3.794 7.507 15.804 Atomic orbital electron populations 1.22095 0.76208 1.04971 1.03758 1.45359 1.08003 1.07011 1.54418 1.25245 0.85221 0.93506 1.06285 1.70724 1.19212 1.10422 1.16577 1.20687 0.93283 0.90552 1.13764 1.16898 0.82231 0.86197 0.76312 1.90740 1.87172 1.13492 1.52886 1.45790 1.04472 1.12120 1.72259 1.21612 0.83973 0.93491 1.01509 1.20049 0.89147 0.89451 0.93116 0.92729 1.42423 1.59533 1.16780 1.16865 1.19102 1.23535 0.93339 1.00683 0.91247 1.24699 1.00616 0.98611 0.96568 1.69654 1.44579 1.36790 1.06602 0.86344 0.79455 0.84183 0.76640 1.21376 1.21855 1.21310 1.23038 0.93829 1.01178 0.99930 1.22959 1.05818 1.01641 0.93033 1.22777 0.97247 1.00175 0.99133 1.22533 0.90316 0.93005 1.05609 0.90317 0.89141 0.89466 0.77304 0.74321 0.91647 0.91774 0.78005 0.93551 0.89141 0.89558 0.90140 0.90280 0.87712 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 11.15 59.85 0.67 1.01 16 2 N -0.47 -4.73 3.13 -125.77 -0.39 -5.12 16 3 C 0.18 2.19 12.55 -89.91 -1.13 1.06 16 4 N -0.45 -7.60 11.01 -11.03 -0.12 -7.72 16 5 C -0.05 -0.91 6.98 -83.09 -0.58 -1.49 16 6 C 0.60 11.56 7.81 -12.56 -0.10 11.47 16 7 O -0.56 -11.74 16.88 5.26 0.09 -11.65 16 8 N -0.70 -13.55 5.39 -61.41 -0.33 -13.88 16 9 C 0.12 2.22 5.22 -4.04 -0.02 2.19 16 10 C 0.19 3.84 2.70 -67.93 -0.18 3.65 16 11 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 12 N -0.72 -17.37 4.54 -53.42 -0.24 -17.62 16 13 C -0.24 -6.28 8.63 -15.06 -0.13 -6.41 16 14 H 0.07 1.80 6.91 -52.49 -0.36 1.44 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 17 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.16 -2.89 5.36 -90.62 -0.49 -3.37 16 22 C -0.20 -3.12 10.18 -26.69 -0.27 -3.39 16 23 C -0.16 -2.88 9.78 -26.69 -0.26 -3.14 16 24 C 0.02 0.31 11.26 -16.64 -0.19 0.12 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.21 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.42 8.71 7.85 -40.82 -0.32 8.39 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.39 10.30 7.80 -40.82 -0.32 9.98 16 33 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 35 H 0.09 1.32 8.05 -51.93 -0.42 0.91 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 39 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.84 336.19 -8.52 -42.36 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -5.51 Total: 17.11 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.77 Total: 1.36 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -0.36 Total: -71.47 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.84 -8.52 -42.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566708708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.755 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds