Wall clock time and date at job start Wed Apr 15 2020 11:43:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34500 * 126.47439 * 2 1
4 4 N 1.30853 * 109.16295 * 180.29183 * 3 2 1
5 5 C 1.33316 * 109.68526 * 359.72725 * 4 3 2
6 6 C 1.36664 * 107.78806 * 0.02562 * 5 4 3
7 7 C 1.46762 * 126.84207 * 180.02562 * 6 5 4
8 8 O 1.21678 * 119.99671 * 184.90394 * 7 6 5
9 9 N 1.34775 * 120.00691 * 4.90057 * 7 6 5
10 10 C 1.46494 * 120.00370 * 174.54274 * 9 7 6
11 11 C 1.53004 * 109.47037 * 180.02562 * 10 9 7
12 12 H 1.08997 * 110.89015 * 54.29834 * 11 10 9
13 13 C 1.55157 * 111.00584 * 178.17982 * 11 10 9
14 14 C 1.54317 * 102.94536 * 153.57120 * 13 11 10
15 15 N 1.47019 * 107.27338 * 337.80808 * 14 13 11
16 16 C 1.36933 * 125.65144 * 178.97113 * 15 14 13
17 17 H 1.08003 * 119.99985 * 174.79181 * 16 15 14
18 18 C 1.38812 * 119.99923 * 354.79777 * 16 15 14
19 19 N 1.31618 * 120.00015 * 6.99680 * 18 16 15
20 20 Si 1.86796 * 119.99981 * 186.99504 * 18 16 15
21 21 H 1.48507 * 109.47228 * 94.98890 * 20 18 16
22 22 H 1.48503 * 109.46995 * 214.98547 * 20 18 16
23 23 H 1.48499 * 109.47578 * 334.98851 * 20 18 16
24 24 C 1.47471 * 108.72043 * 358.97570 * 15 14 13
25 25 H 1.08998 * 109.47424 * 271.99617 * 1 2 3
26 26 H 1.08998 * 109.47306 * 32.00283 * 1 2 3
27 27 H 1.09005 * 109.46962 * 151.99643 * 1 2 3
28 28 H 1.08004 * 125.41311 * 0.02562 * 3 2 1
29 29 H 1.08005 * 126.10356 * 179.97438 * 5 4 3
30 30 H 0.97001 * 119.99792 * 354.54199 * 9 7 6
31 31 H 1.09001 * 109.46879 * 299.99955 * 10 9 7
32 32 H 1.08996 * 109.47517 * 60.00243 * 10 9 7
33 33 H 1.08999 * 110.71789 * 271.93842 * 13 11 10
34 34 H 1.09002 * 110.71687 * 35.02879 * 13 11 10
35 35 H 1.09000 * 109.87963 * 97.22482 * 14 13 11
36 36 H 1.08996 * 109.88625 * 218.23206 * 14 13 11
37 37 H 0.97001 * 120.00482 * 180.02562 * 19 18 16
38 38 H 1.09005 * 110.34507 * 265.25168 * 24 15 14
39 39 H 1.09000 * 110.40816 * 142.91991 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2645 1.0815 0.0000
4 7 3.5138 0.6922 -0.0063
5 6 3.5690 -0.6398 -0.0046
6 6 2.2861 -1.1109 0.0026
7 6 1.8649 -2.5168 0.0074
8 8 0.6841 -2.7983 -0.0764
9 7 2.7859 -3.4960 0.1044
10 6 2.3602 -4.8921 0.2297
11 6 3.5923 -5.7945 0.3227
12 1 4.2510 -5.4711 1.1286
13 6 3.1815 -7.2799 0.5024
14 6 4.3813 -8.0451 -0.0945
15 7 5.0735 -7.1261 -1.0099
16 6 6.2037 -7.4148 -1.7270
17 1 6.5897 -6.6992 -2.4379
18 6 6.8533 -8.6273 -1.5404
19 7 6.3107 -9.5543 -0.7797
20 14 8.4973 -8.9434 -2.3689
21 1 9.5976 -8.6132 -1.4276
22 1 8.5897 -10.3741 -2.7558
23 1 8.6119 -8.0942 -3.5817
24 6 4.3493 -5.8416 -1.0281
25 1 -0.3634 0.0358 1.0270
26 1 -0.3634 0.8715 -0.5446
27 1 -0.3633 -0.9074 -0.4825
28 1 1.9288 2.1081 0.0004
29 1 4.4672 -1.2396 -0.0090
30 1 3.7306 -3.2763 0.0914
31 1 1.7563 -5.0085 1.1296
32 1 1.7698 -5.1717 -0.6428
33 1 3.0572 -7.5205 1.5582
34 1 2.2680 -7.4971 -0.0513
35 1 5.0578 -8.3537 0.7026
36 1 4.0286 -8.9200 -0.6405
37 1 6.7647 -10.4015 -0.6489
38 1 3.6444 -5.8157 -1.8591
39 1 5.0511 -5.0106 -1.0988
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001028665885.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:43:25
Heat of formation + Delta-G solvation = 50.301860 kcal
Electronic energy + Delta-G solvation = -21203.132408 eV
Core-core repulsion = 17954.562158 eV
Total energy + Delta-G solvation = -3248.570249 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 278.148 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.40957 -39.42459 -37.62542 -34.97386 -34.09638 -32.58143 -30.68522 -29.51170
-28.14968 -27.35552 -25.62155 -24.01298 -22.67407 -21.54497 -20.51810 -19.97717
-19.61609 -18.07015 -16.83914 -16.30871 -16.18382 -16.04415 -15.27801 -14.67226
-14.50001 -14.26856 -14.14891 -13.73090 -13.44775 -13.25271 -13.03998 -12.97503
-12.36053 -12.04847 -11.76813 -11.41082 -10.90627 -10.80869 -10.65265 -10.37360
-10.15074 -10.03186 -9.98062 -9.91913 -9.81266 -9.68061 -9.16184 -8.78118
-8.58058 -6.83725 -5.73043 -3.05434 1.11812 2.26141 2.63937 3.21383
3.24232 3.40296 3.45723 3.47596 4.29586 4.45785 4.49217 4.56873
4.86063 4.88605 5.06138 5.15744 5.19383 5.27909 5.40758 5.52424
5.64402 5.84040 5.86190 6.00627 6.02852 6.22741 6.32056 6.35680
6.48875 6.50963 6.65916 6.76658 6.88929 7.39957 7.55156 7.62553
7.65474 7.82141 8.07719 8.25316 9.21317 9.81935 10.48118 11.39131
Molecular weight = 278.15amu
Principal moments of inertia in cm(-1)
A = 0.028448 B = 0.003432 C = 0.003132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.009697 B = 8157.142602 C = 8936.650616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.429 5.429
3 C 0.202 3.798
4 N -0.497 5.497
5 C 0.038 3.962
6 C -0.085 4.085
7 C 0.593 3.407
8 O -0.552 6.552
9 N -0.709 5.709
10 C 0.135 3.865
11 C -0.119 4.119
12 H 0.081 0.919
13 C -0.134 4.134
14 C 0.176 3.824
15 N -0.606 5.606
16 C -0.230 4.230
17 H 0.078 0.922
18 C -0.007 4.007
19 N -0.920 5.920
20 Si 0.910 3.090
21 H -0.289 1.289
22 H -0.291 1.291
23 H -0.281 1.281
24 C 0.141 3.859
25 H 0.079 0.921
26 H 0.087 0.913
27 H 0.107 0.893
28 H 0.212 0.788
29 H 0.180 0.820
30 H 0.405 0.595
31 H 0.067 0.933
32 H 0.072 0.928
33 H 0.062 0.938
34 H 0.059 0.941
35 H 0.048 0.952
36 H 0.041 0.959
37 H 0.252 0.748
38 H 0.019 0.981
39 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.259 17.907 4.042 21.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 N -0.109 5.109
3 C -0.080 4.080
4 N -0.215 5.215
5 C -0.116 4.116
6 C -0.202 4.202
7 C 0.379 3.621
8 O -0.431 6.431
9 N -0.359 5.359
10 C 0.012 3.988
11 C -0.138 4.138
12 H 0.100 0.900
13 C -0.173 4.173
14 C 0.051 3.949
15 N -0.333 5.333
16 C -0.359 4.359
17 H 0.096 0.904
18 C -0.203 4.203
19 N -0.567 5.567
20 Si 0.741 3.259
21 H -0.216 1.216
22 H -0.218 1.218
23 H -0.206 1.206
24 C 0.015 3.985
25 H 0.098 0.902
26 H 0.105 0.895
27 H 0.126 0.874
28 H 0.228 0.772
29 H 0.197 0.803
30 H 0.240 0.760
31 H 0.085 0.915
32 H 0.090 0.910
33 H 0.081 0.919
34 H 0.078 0.922
35 H 0.066 0.934
36 H 0.059 0.941
37 H 0.062 0.938
38 H 0.037 0.963
39 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -11.483 18.005 3.961 21.719
hybrid contribution 0.602 -0.583 -0.408 0.932
sum -10.881 17.422 3.553 20.846
Atomic orbital electron populations
1.22317 0.75312 1.05903 1.04177 1.45264 1.08321 1.05810 1.51510
1.25150 0.85626 0.93620 1.03653 1.70159 1.18991 1.12202 1.20129
1.22720 0.95339 0.91315 1.02227 1.20849 0.91548 0.89006 1.18765
1.16756 0.85630 0.83114 0.76604 1.90766 1.17062 1.84040 1.51257
1.45726 1.09719 1.06869 1.73630 1.21461 0.97143 0.78147 1.02019
1.22632 0.95472 0.95517 1.00219 0.90023 1.22850 1.00282 0.93660
1.00496 1.21150 0.89434 0.91279 0.92987 1.44488 1.28924 1.08584
1.51262 1.19065 0.99525 1.01072 1.16195 0.90419 1.24822 0.99000
0.96483 1.00043 1.69976 1.38149 1.06012 1.42591 0.86123 0.83950
0.77188 0.78668 1.21595 1.21791 1.20620 1.21596 0.93781 0.90057
0.93058 0.90219 0.89452 0.87438 0.77173 0.80259 0.75979 0.91465
0.91002 0.91947 0.92191 0.93378 0.94076 0.93753 0.96320 0.94454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.47 10.78 59.85 0.65 1.11 16
2 N -0.43 -4.30 3.17 -121.98 -0.39 -4.68 16
3 C 0.20 1.85 12.52 -90.57 -1.13 0.71 16
4 N -0.50 -5.93 11.20 -14.43 -0.16 -6.10 16
5 C 0.04 0.44 11.37 -17.48 -0.20 0.24 16
6 C -0.08 -1.02 6.91 -82.14 -0.57 -1.59 16
7 C 0.59 8.01 7.78 -12.82 -0.10 7.91 16
8 O -0.55 -8.76 14.83 5.21 0.08 -8.69 16
9 N -0.71 -8.85 5.43 -61.60 -0.33 -9.18 16
10 C 0.14 1.86 5.13 -4.04 -0.02 1.84 16
11 C -0.12 -1.89 3.07 -88.47 -0.27 -2.16 16
12 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
13 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16
14 C 0.18 4.19 5.38 -3.07 -0.02 4.17 16
15 N -0.61 -15.22 3.40 -170.04 -0.58 -15.79 16
16 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16
17 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16
18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16
19 N -0.92 -26.90 10.36 55.49 0.57 -26.33 16
20 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16
21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
24 C 0.14 2.77 6.56 -2.50 -0.02 2.75 16
25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16
27 H 0.11 1.01 6.31 -51.93 -0.33 0.68 16
28 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16
29 H 0.18 1.66 7.46 -52.48 -0.39 1.27 16
30 H 0.40 4.37 7.38 -40.82 -0.30 4.07 16
31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
32 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16
33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16
35 H 0.05 1.26 7.29 -51.93 -0.38 0.89 16
36 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16
37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
38 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16
39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 324.09 15.07 4.88 4.88
Total: -1.00 -34.17 324.09 -8.59 -42.75
By element:
Atomic # 1 Polarization: 6.07 SS G_CDS: -5.55 Total: 0.52 kcal
Atomic # 6 Polarization: 7.73 SS G_CDS: -2.09 Total: 5.64 kcal
Atomic # 7 Polarization: -61.20 SS G_CDS: -0.89 Total: -62.08 kcal
Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.69 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -34.17 -8.59 -42.75 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028665885.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.056 kcal
(2) G-P(sol) polarization free energy of solvation -34.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds