Wall clock time and date at job start Wed Apr 15 2020 11:43:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.34500 * 126.47439 * 2 1
4 4 N 1.30853 * 109.16295 * 180.29183 * 3 2 1
5 5 C 1.33316 * 109.68526 * 359.72725 * 4 3 2
6 6 C 1.36664 * 107.78806 * 0.02562 * 5 4 3
7 7 C 1.46762 * 126.84207 * 180.02562 * 6 5 4
8 8 O 1.21678 * 119.99671 * 184.90394 * 7 6 5
9 9 N 1.34775 * 120.00691 * 4.90057 * 7 6 5
10 10 C 1.46494 * 120.00370 * 174.54274 * 9 7 6
11 11 C 1.53004 * 109.47037 * 180.02562 * 10 9 7
12 12 H 1.08997 * 110.89015 * 54.29834 * 11 10 9
13 13 C 1.55157 * 111.00584 * 178.17982 * 11 10 9
14 14 C 1.54317 * 102.94536 * 153.57120 * 13 11 10
15 15 N 1.47019 * 107.27338 * 337.80808 * 14 13 11
16 16 C 1.36933 * 125.65144 * 178.97113 * 15 14 13
17 17 H 1.08003 * 119.99985 * 174.79181 * 16 15 14
18 18 C 1.38812 * 119.99923 * 354.79777 * 16 15 14
19 19 N 1.31618 * 120.00015 * 6.99680 * 18 16 15
20 20 Si 1.86796 * 119.99981 * 186.99504 * 18 16 15
21 21 H 1.48507 * 109.47228 * 94.98890 * 20 18 16
22 22 H 1.48503 * 109.46995 * 214.98547 * 20 18 16
23 23 H 1.48499 * 109.47578 * 334.98851 * 20 18 16
24 24 C 1.47471 * 108.72043 * 358.97570 * 15 14 13
25 25 H 1.08998 * 109.47424 * 271.99617 * 1 2 3
26 26 H 1.08998 * 109.47306 * 32.00283 * 1 2 3
27 27 H 1.09005 * 109.46962 * 151.99643 * 1 2 3
28 28 H 1.08004 * 125.41311 * 0.02562 * 3 2 1
29 29 H 1.08005 * 126.10356 * 179.97438 * 5 4 3
30 30 H 0.97001 * 119.99792 * 354.54199 * 9 7 6
31 31 H 1.09001 * 109.46879 * 299.99955 * 10 9 7
32 32 H 1.08996 * 109.47517 * 60.00243 * 10 9 7
33 33 H 1.08999 * 110.71789 * 271.93842 * 13 11 10
34 34 H 1.09002 * 110.71687 * 35.02879 * 13 11 10
35 35 H 1.09000 * 109.87963 * 97.22482 * 14 13 11
36 36 H 1.08996 * 109.88625 * 218.23206 * 14 13 11
37 37 H 0.97001 * 120.00482 * 180.02562 * 19 18 16
38 38 H 1.09005 * 110.34507 * 265.25168 * 24 15 14
39 39 H 1.09000 * 110.40816 * 142.91991 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2645 1.0815 0.0000
4 7 3.5138 0.6922 -0.0063
5 6 3.5690 -0.6398 -0.0046
6 6 2.2861 -1.1109 0.0026
7 6 1.8649 -2.5168 0.0074
8 8 0.6841 -2.7983 -0.0764
9 7 2.7859 -3.4960 0.1044
10 6 2.3602 -4.8921 0.2297
11 6 3.5923 -5.7945 0.3227
12 1 4.2510 -5.4711 1.1286
13 6 3.1815 -7.2799 0.5024
14 6 4.3813 -8.0451 -0.0945
15 7 5.0735 -7.1261 -1.0099
16 6 6.2037 -7.4148 -1.7270
17 1 6.5897 -6.6992 -2.4379
18 6 6.8533 -8.6273 -1.5404
19 7 6.3107 -9.5543 -0.7797
20 14 8.4973 -8.9434 -2.3689
21 1 9.5976 -8.6132 -1.4276
22 1 8.5897 -10.3741 -2.7558
23 1 8.6119 -8.0942 -3.5817
24 6 4.3493 -5.8416 -1.0281
25 1 -0.3634 0.0358 1.0270
26 1 -0.3634 0.8715 -0.5446
27 1 -0.3633 -0.9074 -0.4825
28 1 1.9288 2.1081 0.0004
29 1 4.4672 -1.2396 -0.0090
30 1 3.7306 -3.2763 0.0914
31 1 1.7563 -5.0085 1.1296
32 1 1.7698 -5.1717 -0.6428
33 1 3.0572 -7.5205 1.5582
34 1 2.2680 -7.4971 -0.0513
35 1 5.0578 -8.3537 0.7026
36 1 4.0286 -8.9200 -0.6405
37 1 6.7647 -10.4015 -0.6489
38 1 3.6444 -5.8157 -1.8591
39 1 5.0511 -5.0106 -1.0988
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001028665885.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:43:18
Heat of formation + Delta-G solvation = 27.489973 kcal
Electronic energy + Delta-G solvation = -21204.121605 eV
Core-core repulsion = 17954.562158 eV
Total energy + Delta-G solvation = -3249.559447 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 278.148 amu
Computer time = 3.91 seconds
Orbital eigenvalues (eV)
-43.18290 -40.52089 -39.17152 -36.19195 -34.97170 -34.29447 -32.01624 -30.97234
-29.62522 -27.97755 -27.28734 -25.52945 -23.75662 -22.34438 -21.96938 -21.47255
-20.79946 -19.07326 -18.64384 -17.31342 -17.16854 -16.97488 -16.66171 -16.36928
-15.71075 -15.54741 -15.12313 -14.97589 -14.58792 -14.34816 -13.94976 -13.85106
-13.79342 -13.58517 -13.40863 -13.01818 -12.75777 -12.63621 -12.00062 -11.92070
-11.85306 -11.54760 -11.45835 -11.39615 -10.92316 -10.72407 -10.67206 -10.20346
-9.61931 -8.87862 -7.85208 -5.19260 0.27681 1.47124 1.48624 1.51139
1.57497 1.83815 2.29136 2.32848 2.50648 3.32908 3.54012 3.63014
3.78951 3.87006 3.97237 4.03799 4.05544 4.09713 4.38741 4.45326
4.46441 4.63901 4.70508 4.72504 4.81946 4.93349 5.06559 5.09899
5.14181 5.30863 5.43501 5.47170 5.48947 5.69149 5.79874 6.11051
6.21675 6.42194 6.87551 7.09212 7.11782 7.79688 8.44138 9.25791
Molecular weight = 278.15amu
Principal moments of inertia in cm(-1)
A = 0.028448 B = 0.003432 C = 0.003132
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.009697 B = 8157.142602 C = 8936.650616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.433 5.433
3 C 0.218 3.782
4 N -0.533 5.533
5 C 0.038 3.962
6 C -0.111 4.111
7 C 0.594 3.406
8 O -0.580 6.580
9 N -0.704 5.704
10 C 0.148 3.852
11 C -0.096 4.096
12 H 0.092 0.908
13 C -0.121 4.121
14 C 0.181 3.819
15 N -0.629 5.629
16 C -0.243 4.243
17 H 0.083 0.917
18 C -0.066 4.066
19 N -0.950 5.950
20 Si 0.976 3.024
21 H -0.286 1.286
22 H -0.297 1.297
23 H -0.268 1.268
24 C 0.136 3.864
25 H 0.089 0.911
26 H 0.123 0.877
27 H 0.083 0.917
28 H 0.255 0.745
29 H 0.193 0.807
30 H 0.414 0.586
31 H 0.080 0.920
32 H 0.063 0.937
33 H 0.087 0.913
34 H 0.072 0.928
35 H 0.014 0.986
36 H 0.001 0.999
37 H 0.246 0.754
38 H 0.018 0.982
39 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.755 20.459 4.273 23.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.113 5.113
3 C -0.064 4.064
4 N -0.251 5.251
5 C -0.116 4.116
6 C -0.228 4.228
7 C 0.382 3.618
8 O -0.462 6.462
9 N -0.354 5.354
10 C 0.025 3.975
11 C -0.115 4.115
12 H 0.110 0.890
13 C -0.160 4.160
14 C 0.056 3.944
15 N -0.356 5.356
16 C -0.372 4.372
17 H 0.100 0.900
18 C -0.259 4.259
19 N -0.599 5.599
20 Si 0.805 3.195
21 H -0.213 1.213
22 H -0.223 1.223
23 H -0.193 1.193
24 C 0.011 3.989
25 H 0.108 0.892
26 H 0.142 0.858
27 H 0.101 0.899
28 H 0.271 0.729
29 H 0.210 0.790
30 H 0.250 0.750
31 H 0.098 0.902
32 H 0.081 0.919
33 H 0.105 0.895
34 H 0.090 0.910
35 H 0.033 0.967
36 H 0.019 0.981
37 H 0.056 0.944
38 H 0.035 0.965
39 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -11.991 20.594 4.188 24.196
hybrid contribution 0.720 -1.290 -0.513 1.564
sum -11.271 19.304 3.674 22.653
Atomic orbital electron populations
1.22467 0.73820 1.06348 1.05141 1.45507 1.09310 1.05411 1.51065
1.26018 0.84792 0.94940 1.00651 1.70184 1.20698 1.12325 1.21876
1.23015 0.95716 0.91617 1.01296 1.20716 0.92253 0.88826 1.20999
1.16935 0.85189 0.83820 0.75893 1.90753 1.18171 1.84555 1.52723
1.45606 1.10188 1.06252 1.73404 1.21217 0.95690 0.78339 1.02273
1.22426 0.96019 0.94890 0.98209 0.88981 1.22708 0.97839 0.93823
1.01637 1.20931 0.90838 0.91088 0.91528 1.44824 1.28863 1.10876
1.51019 1.19470 1.00371 1.01101 1.16284 0.89954 1.25659 1.02392
0.96529 1.01322 1.70196 1.39329 1.06144 1.44236 0.85088 0.79726
0.76632 0.78075 1.21277 1.22343 1.19250 1.21785 0.93889 0.88107
0.95072 0.89234 0.85850 0.89871 0.72929 0.79017 0.74958 0.90179
0.91894 0.89485 0.90956 0.96734 0.98053 0.94441 0.96463 0.93209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.76 10.78 127.77 1.38 2.14 16
2 N -0.43 -7.71 3.17 -539.82 -1.71 -9.42 16
3 C 0.22 3.34 12.52 180.33 2.26 5.60 16
4 N -0.53 -11.60 11.20 -199.56 -2.24 -13.84 16
5 C 0.04 0.82 11.37 84.10 0.96 1.78 16
6 C -0.11 -2.52 6.91 40.01 0.28 -2.24 16
7 C 0.59 15.33 7.78 86.47 0.67 16.00 16
8 O -0.58 -17.96 14.83 -4.28 -0.06 -18.02 16
9 N -0.70 -16.35 5.43 -467.02 -2.54 -18.89 16
10 C 0.15 3.77 5.13 86.38 0.44 4.22 16
11 C -0.10 -2.88 3.07 -9.40 -0.03 -2.91 16
12 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
13 C -0.12 -4.15 6.42 31.78 0.20 -3.95 16
14 C 0.18 8.84 5.38 86.73 0.47 9.31 16
15 N -0.63 -31.93 3.40 -691.89 -2.35 -34.28 16
16 C -0.24 -13.61 10.26 84.03 0.86 -12.75 16
17 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16
18 C -0.07 -3.77 5.48 84.86 0.46 -3.30 16
19 N -0.95 -57.43 10.36 21.65 0.22 -57.21 16
20 Si 0.98 45.82 29.56 68.60 2.03 47.85 16
21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16
23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
24 C 0.14 5.22 6.56 86.85 0.57 5.79 16
25 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
26 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16
27 H 0.08 1.48 6.31 -2.38 -0.02 1.46 16
28 H 0.25 1.23 8.06 -2.91 -0.02 1.21 16
29 H 0.19 3.28 7.46 -2.91 -0.02 3.26 16
30 H 0.41 8.15 7.38 -92.71 -0.68 7.46 16
31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16
33 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16
34 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16
35 H 0.01 0.79 7.29 -2.39 -0.02 0.77 16
36 H 0.00 0.07 7.61 -2.39 -0.02 0.05 16
37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
38 H 0.02 0.68 7.96 -2.38 -0.02 0.66 16
39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -76.12 324.09 2.25 -73.86
By element:
Atomic # 1 Polarization: 9.89 SS G_CDS: 0.37 Total: 10.26 kcal
Atomic # 6 Polarization: 11.16 SS G_CDS: 8.52 Total: 19.68 kcal
Atomic # 7 Polarization: -125.03 SS G_CDS: -8.61 Total: -133.64 kcal
Atomic # 8 Polarization: -17.96 SS G_CDS: -0.06 Total: -18.02 kcal
Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal
Total: -76.12 2.25 -73.86 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028665885.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.355 kcal
(2) G-P(sol) polarization free energy of solvation -76.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.865 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.91 seconds