Wall clock time and date at job start Wed Apr 15 2020 11:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35839 * 126.13404 * 2 1 4 4 N 1.30181 * 109.00294 * 179.76161 * 3 2 1 5 5 C 1.35758 * 108.86519 * 0.38970 * 4 3 2 6 6 C 1.47322 * 126.23606 * 179.87906 * 5 4 3 7 7 O 1.21627 * 119.99702 * 179.68800 * 6 5 4 8 8 N 1.34771 * 120.00196 * 359.68769 * 6 5 4 9 9 C 1.46494 * 120.00242 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47395 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.84833 * 43.80232 * 10 9 8 12 12 C 1.53781 * 113.61520 * 175.00123 * 10 9 8 13 13 C 1.53785 * 87.07813 * 140.06489 * 12 10 9 14 14 H 1.08995 * 113.61696 * 89.20372 * 13 12 10 15 15 N 1.46504 * 113.61042 * 220.01603 * 13 12 10 16 16 C 1.36943 * 119.99781 * 203.47307 * 15 13 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 13 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.53775 * 87.17650 * 334.60774 * 13 12 10 25 25 C 1.35379 * 126.13337 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47009 * 269.99750 * 1 2 3 27 27 H 1.09004 * 109.47251 * 29.99222 * 1 2 3 28 28 H 1.08996 * 109.47256 * 149.99686 * 1 2 3 29 29 H 1.07994 * 125.50541 * 0.02861 * 3 2 1 30 30 H 0.96999 * 119.99885 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47236 * 60.00091 * 9 8 6 32 32 H 1.09003 * 109.47499 * 300.00357 * 9 8 6 33 33 H 1.08999 * 113.61621 * 25.51627 * 12 10 9 34 34 H 1.09003 * 113.61274 * 254.60992 * 12 10 9 35 35 H 0.97000 * 120.00410 * 23.47632 * 15 13 12 36 36 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 37 37 H 1.09003 * 113.61624 * 139.93936 * 24 13 12 38 38 H 1.09002 * 113.61343 * 270.84788 * 24 13 12 39 39 H 1.08003 * 126.56643 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2660 1.0971 0.0000 4 7 3.5101 0.7136 0.0051 5 6 3.5512 -0.6433 -0.0001 6 6 4.7653 -1.4778 0.0005 7 8 4.6698 -2.6903 0.0011 8 7 5.9817 -0.8976 0.0004 9 6 7.1890 -1.7274 0.0016 10 6 8.4264 -0.8275 0.0018 11 1 8.3419 0.0081 0.6966 12 6 9.7501 -1.6004 0.1259 13 6 10.3301 -0.6163 -0.9038 14 1 10.7674 0.2763 -0.4566 15 7 11.2110 -1.2490 -1.8887 16 6 12.1554 -0.5028 -2.5419 17 1 12.2504 0.5522 -2.3313 18 6 12.9862 -1.1011 -3.4793 19 7 12.8700 -2.3866 -3.7363 20 14 14.2691 -0.0815 -4.3759 21 1 14.1963 1.3267 -3.9103 22 1 15.6210 -0.6274 -4.0935 23 1 14.0097 -0.1332 -5.8372 24 6 8.8910 -0.4120 -1.4060 25 6 2.2633 -1.0934 -0.0005 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8901 -0.5137 28 1 -0.3633 -0.8899 -0.5139 29 1 1.9259 2.1221 0.0004 30 1 6.0579 0.0694 -0.0005 31 1 7.1978 -2.3574 -0.8878 32 1 7.1971 -2.3559 0.8921 33 1 9.6920 -2.6269 -0.2359 34 1 10.2102 -1.5230 1.1110 35 1 11.1254 -2.1965 -2.0782 36 1 13.4508 -2.8047 -4.3910 37 1 8.6585 0.6232 -1.6557 38 1 8.5975 -1.1132 -2.1872 39 1 1.9421 -2.1246 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086061074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:52 Heat of formation + Delta-G solvation = 54.424000 kcal Electronic energy + Delta-G solvation = -20413.038328 eV Core-core repulsion = 17164.646829 eV Total energy + Delta-G solvation = -3248.391500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.44465 -39.39097 -38.22539 -34.64349 -34.36926 -33.15843 -30.35193 -30.00764 -28.13915 -26.83074 -24.99068 -24.00349 -22.97485 -21.52319 -20.87663 -20.16633 -18.98182 -18.06261 -16.98420 -16.25775 -16.24164 -15.95989 -15.14233 -14.82878 -14.57639 -14.42361 -14.09746 -13.72757 -13.49346 -13.38346 -13.25769 -13.00241 -12.79270 -11.81099 -11.71280 -11.28384 -11.16595 -10.80666 -10.59724 -10.46386 -10.21346 -10.12339 -10.06384 -9.85593 -9.73390 -9.41422 -9.02939 -8.82269 -8.72652 -6.89982 -5.73163 -3.01527 1.38003 2.18775 2.25804 3.36794 3.46180 3.51641 3.53448 3.54020 4.15790 4.19864 4.43461 4.54054 4.63209 4.81275 4.91604 5.08226 5.11573 5.23152 5.36081 5.53303 5.63587 5.67424 5.92009 5.94984 6.03009 6.14767 6.17037 6.37716 6.41631 6.46730 6.59831 6.65523 6.70929 6.93073 7.21115 7.41367 7.74857 7.76335 8.35052 8.45647 9.56595 10.15770 10.50065 11.49441 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035480 B = 0.002629 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.989673 B =10648.363167 C =10922.088722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.463 5.463 3 C 0.183 3.817 4 N -0.462 5.462 5 C -0.059 4.059 6 C 0.599 3.401 7 O -0.550 6.550 8 N -0.709 5.709 9 C 0.132 3.868 10 C -0.127 4.127 11 H 0.088 0.912 12 C -0.141 4.141 13 C 0.165 3.835 14 H 0.074 0.926 15 N -0.714 5.714 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.160 4.160 25 C 0.030 3.970 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.212 0.788 30 H 0.408 0.592 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.970 6.367 10.219 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.100 4.100 4 N -0.181 5.181 5 C -0.188 4.188 6 C 0.385 3.615 7 O -0.429 6.429 8 N -0.359 5.359 9 C 0.009 3.991 10 C -0.146 4.146 11 H 0.107 0.893 12 C -0.181 4.181 13 C 0.053 3.947 14 H 0.092 0.908 15 N -0.352 5.352 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.201 4.201 25 C -0.108 4.108 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.277 6.138 10.137 28.826 hybrid contribution -0.193 0.249 -0.651 0.723 sum -26.470 6.386 9.486 28.834 Atomic orbital electron populations 1.22147 0.75821 1.05194 1.04041 1.45352 1.08245 1.06954 1.53940 1.25209 0.85189 0.93595 1.06036 1.70621 1.19516 1.10453 1.17521 1.20660 0.93326 0.90499 1.14362 1.16904 0.82097 0.86324 0.76210 1.90795 1.86959 1.13441 1.51656 1.45834 1.05147 1.11174 1.73768 1.21454 0.82283 0.93246 1.02100 1.22668 0.93178 0.98827 0.99938 0.89333 1.23419 0.94416 0.99967 1.00271 1.21532 0.88680 0.94797 0.89685 0.90762 1.42429 1.38451 1.09468 1.44825 1.19357 1.09354 0.92744 1.15732 0.91053 1.24769 1.00183 0.95960 1.00200 1.69670 1.41661 1.09433 1.37332 0.86119 0.81440 0.79178 0.79476 1.20547 1.21898 1.21907 1.23962 1.00880 1.00592 0.94667 1.22617 0.90247 0.93207 1.04765 0.90081 0.88987 0.89242 0.77187 0.75666 0.91157 0.91709 0.90091 0.92006 0.78079 0.93553 0.92719 0.90369 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 11.15 59.85 0.67 0.80 16 2 N -0.46 -3.11 3.13 -125.78 -0.39 -3.51 16 3 C 0.18 1.43 12.55 -89.91 -1.13 0.30 16 4 N -0.46 -5.42 11.01 -11.03 -0.12 -5.55 16 5 C -0.06 -0.76 6.98 -83.09 -0.58 -1.34 16 6 C 0.60 9.13 7.81 -12.57 -0.10 9.04 16 7 O -0.55 -9.87 16.88 5.25 0.09 -9.78 16 8 N -0.71 -10.03 5.55 -61.42 -0.34 -10.37 16 9 C 0.13 1.95 5.51 -4.04 -0.02 1.93 16 10 C -0.13 -1.86 3.75 -89.71 -0.34 -2.20 16 11 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.14 -2.36 7.39 -25.92 -0.19 -2.55 16 13 C 0.16 3.33 4.47 -67.12 -0.30 3.03 16 14 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 15 N -0.71 -18.31 5.41 -52.64 -0.28 -18.60 16 16 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 20 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 C -0.16 -2.84 7.45 -25.83 -0.19 -3.03 16 25 C 0.03 0.29 11.26 -16.64 -0.19 0.11 16 26 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.41 5.30 8.19 -40.82 -0.33 4.97 16 31 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.39 10.50 7.91 -40.82 -0.32 10.17 16 36 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 39 H 0.19 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -35.73 336.99 -8.55 -44.28 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.67 Total: 10.13 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.62 Total: -1.43 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.42 Total: -66.00 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.73 -8.55 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086061074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.709 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds