Wall clock time and date at job start Wed Apr 15 2020 11:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35850 * 126.13517 * 2 1 4 4 N 1.30169 * 109.00012 * 179.76588 * 3 2 1 5 5 C 1.35760 * 108.87077 * 0.37906 * 4 3 2 6 6 C 1.47323 * 126.23697 * 179.88547 * 5 4 3 7 7 O 1.21619 * 119.99881 * 179.69159 * 6 5 4 8 8 N 1.34772 * 120.00026 * 359.68908 * 6 5 4 9 9 C 1.46498 * 120.00293 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47712 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.84570 * 316.19751 * 10 9 8 12 12 C 1.54050 * 113.61856 * 87.50177 * 10 9 8 13 13 C 1.53783 * 86.98283 * 139.98369 * 12 10 9 14 14 H 1.09000 * 113.61554 * 219.97995 * 13 12 10 15 15 N 1.46498 * 113.61758 * 89.15928 * 13 12 10 16 16 C 1.36943 * 119.99752 * 105.58532 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00044 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00049 * 20 18 16 24 24 C 1.53775 * 113.61795 * 185.00052 * 10 9 8 25 25 C 1.35382 * 126.13343 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.46926 * 269.99840 * 1 2 3 27 27 H 1.08999 * 109.47464 * 30.00052 * 1 2 3 28 28 H 1.08998 * 109.47471 * 149.99988 * 1 2 3 29 29 H 1.07997 * 125.49819 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00017 * 0.02562 * 8 6 5 31 31 H 1.08998 * 109.47102 * 59.99754 * 9 8 6 32 32 H 1.09008 * 109.46796 * 300.00200 * 9 8 6 33 33 H 1.08997 * 113.61361 * 25.47986 * 12 10 9 34 34 H 1.09001 * 113.69604 * 254.49568 * 12 10 9 35 35 H 0.97001 * 120.00384 * 285.86888 * 15 13 12 36 36 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 37 37 H 1.09000 * 113.62018 * 105.46550 * 24 10 9 38 38 H 1.09001 * 113.68869 * 334.57573 * 24 10 9 39 39 H 1.07993 * 126.56429 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7137 0.0050 5 6 3.5511 -0.6433 -0.0001 6 6 4.7652 -1.4778 0.0007 7 8 4.6698 -2.6902 0.0014 8 7 5.9817 -0.8976 0.0005 9 6 7.1890 -1.7273 0.0007 10 6 8.4264 -0.8274 0.0011 11 1 8.3425 0.0079 -0.6941 12 6 8.8891 -0.4149 1.4114 13 6 10.3287 -0.6172 0.9099 14 1 10.9841 -1.0884 1.6424 15 7 10.9157 0.5839 0.3108 16 6 11.8602 1.2997 0.9970 17 1 12.1756 0.9762 1.9780 18 6 12.4123 2.4410 0.4317 19 7 12.0275 2.8354 -0.7636 20 14 13.7011 3.4169 1.3674 21 1 13.9580 2.7684 2.6783 22 1 14.9599 3.4567 0.5804 23 1 13.2108 4.8013 1.5871 24 6 9.7502 -1.6002 -0.1215 25 6 2.2633 -1.0934 -0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.9258 2.1221 0.0004 30 1 6.0578 0.0695 0.0003 31 1 7.1974 -2.3568 -0.8891 32 1 7.1974 -2.3564 0.8909 33 1 8.5952 -1.1183 2.1905 34 1 8.6560 0.6196 1.6638 35 1 10.6324 0.8745 -0.5703 36 1 12.4135 3.6328 -1.1588 37 1 10.2119 -1.5223 -1.1058 38 1 9.6927 -2.6274 0.2388 39 1 1.9421 -2.1245 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086341571.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:03 Heat of formation + Delta-G solvation = 55.714038 kcal Electronic energy + Delta-G solvation = -20570.464307 eV Core-core repulsion = 17322.128747 eV Total energy + Delta-G solvation = -3248.335560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.39025 -39.37016 -38.25956 -34.59920 -34.32342 -33.07504 -30.28495 -29.92694 -28.09547 -26.81715 -24.96506 -23.86961 -22.99331 -21.62284 -21.29147 -20.08911 -18.47685 -17.91356 -17.19722 -16.21916 -16.16438 -15.87214 -15.11052 -14.79040 -14.54341 -14.13997 -14.03217 -13.90418 -13.43668 -13.37412 -13.21602 -12.92333 -12.83143 -12.16296 -11.82118 -11.28248 -10.98038 -10.81424 -10.52494 -10.40902 -10.15615 -10.07527 -10.06929 -9.73979 -9.63349 -9.38071 -8.98735 -8.83835 -8.68122 -6.93921 -5.75691 -3.04355 1.42237 2.24794 2.30784 3.42452 3.45168 3.50801 3.53084 3.57524 4.20812 4.25367 4.48610 4.58037 4.60330 4.84888 4.96528 5.14915 5.18583 5.25914 5.37331 5.51455 5.72606 5.74244 5.80067 5.95568 6.05494 6.18387 6.21775 6.30354 6.45768 6.57939 6.68299 6.71964 6.84946 6.99705 7.13707 7.47952 7.74369 7.82096 8.38670 8.43685 9.54197 10.12670 10.46900 11.46933 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.002993 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.467545 B = 9354.078596 C =10167.461651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.463 5.463 3 C 0.184 3.816 4 N -0.460 5.460 5 C -0.060 4.060 6 C 0.600 3.400 7 O -0.554 6.554 8 N -0.708 5.708 9 C 0.131 3.869 10 C -0.119 4.119 11 H 0.094 0.906 12 C -0.168 4.168 13 C 0.167 3.833 14 H 0.061 0.939 15 N -0.706 5.706 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.147 4.147 25 C 0.029 3.971 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.212 0.788 30 H 0.411 0.589 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.725 -6.548 0.952 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.146 5.146 3 C -0.099 4.099 4 N -0.179 5.179 5 C -0.189 4.189 6 C 0.385 3.615 7 O -0.433 6.433 8 N -0.358 5.358 9 C 0.008 3.992 10 C -0.138 4.138 11 H 0.112 0.888 12 C -0.209 4.209 13 C 0.055 3.945 14 H 0.079 0.921 15 N -0.345 5.345 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.186 4.186 25 C -0.110 4.110 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -24.028 -6.806 1.073 24.996 hybrid contribution -0.316 0.805 0.140 0.877 sum -24.344 -6.001 1.213 25.102 Atomic orbital electron populations 1.22138 0.75877 1.05124 1.04036 1.45368 1.08213 1.06963 1.54008 1.25239 0.85154 0.93604 1.05942 1.70650 1.19505 1.10413 1.17303 1.20661 0.93302 0.90543 1.14376 1.16905 0.82126 0.86286 0.76140 1.90771 1.87037 1.13457 1.52050 1.45868 1.05075 1.11417 1.73440 1.21497 0.82701 0.93318 1.01674 1.22753 0.92485 0.98699 0.99850 0.88818 1.23926 1.01322 1.01164 0.94494 1.21061 0.91458 0.88264 0.93740 0.92106 1.42186 1.46332 1.26209 1.19779 1.19337 1.13662 1.04440 0.99610 0.90964 1.24765 1.00608 0.98741 0.96913 1.69677 1.46322 1.26299 1.15773 0.86100 0.81208 0.79933 0.78854 1.20520 1.21884 1.21875 1.23411 0.95383 0.98496 1.01329 1.22589 0.90251 0.93156 1.04961 0.90095 0.88995 0.89307 0.77140 0.75374 0.91792 0.91555 0.91453 0.91443 0.78090 0.93533 0.91353 0.90443 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.15 59.84 0.67 0.83 16 2 N -0.46 -3.41 3.13 -125.78 -0.39 -3.81 16 3 C 0.18 1.62 12.55 -89.91 -1.13 0.49 16 4 N -0.46 -5.95 11.01 -11.03 -0.12 -6.07 16 5 C -0.06 -0.81 6.98 -83.09 -0.58 -1.39 16 6 C 0.60 9.44 7.81 -12.57 -0.10 9.34 16 7 O -0.55 -9.93 16.88 5.26 0.09 -9.84 16 8 N -0.71 -10.71 5.55 -61.42 -0.34 -11.05 16 9 C 0.13 1.97 5.51 -4.04 -0.02 1.95 16 10 C -0.12 -1.94 3.64 -89.67 -0.33 -2.27 16 11 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 12 C -0.17 -3.00 7.45 -25.78 -0.19 -3.19 16 13 C 0.17 3.38 4.55 -67.12 -0.31 3.07 16 14 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 15 N -0.71 -17.89 5.31 -52.64 -0.28 -18.17 16 16 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C -0.15 -2.46 7.38 -25.92 -0.19 -2.66 16 25 C 0.03 0.30 11.26 -16.64 -0.19 0.11 16 26 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 27 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.41 6.11 8.19 -40.82 -0.33 5.78 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.00 7.85 -51.92 -0.41 0.60 16 33 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.39 10.32 7.90 -40.82 -0.32 9.99 16 36 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -35.14 336.86 -8.55 -43.68 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.67 Total: 11.32 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.61 Total: -1.06 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.41 Total: -66.72 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.14 -8.55 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086341571.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.398 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds