Wall clock time and date at job start Wed Apr 15 2020 11:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36233 * 126.45079 * 2 1 4 4 C 1.36194 * 106.97424 * 180.28154 * 3 2 1 5 5 N 1.40231 * 125.87542 * 179.71252 * 4 3 2 6 6 N 1.33314 * 108.24897 * 359.56394 * 4 3 2 7 7 C 1.31787 * 109.23049 * 0.44364 * 6 4 3 8 8 C 1.47281 * 125.77569 * 179.72839 * 7 6 4 9 9 O 1.21626 * 120.00127 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99739 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99993 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.41124 * 35.13674 * 11 10 8 13 13 C 1.52954 * 109.41459 * 154.99705 * 11 10 8 14 14 C 1.53229 * 109.40477 * 183.70803 * 13 11 10 15 15 C 1.51279 * 108.53452 * 305.37191 * 14 13 11 16 16 C 1.37874 * 120.84641 * 231.32685 * 15 14 13 17 17 N 1.31510 * 120.00476 * 0.02562 * 16 15 14 18 18 Si 1.86806 * 119.99665 * 179.97438 * 16 15 14 19 19 H 1.48509 * 109.46702 * 60.00053 * 18 16 15 20 20 H 1.48493 * 109.47275 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47072 * 300.00358 * 18 16 15 22 22 C 1.51267 * 118.29901 * 51.34721 * 15 14 13 23 23 C 1.52957 * 109.41396 * 275.35327 * 11 10 8 24 24 H 1.09004 * 109.47205 * 89.98372 * 1 2 3 25 25 H 1.09003 * 109.47466 * 209.97807 * 1 2 3 26 26 H 1.09002 * 109.47807 * 329.98132 * 1 2 3 27 27 H 1.08002 * 126.50947 * 0.02562 * 3 2 1 28 28 H 0.96998 * 120.00445 * 359.97438 * 5 4 3 29 29 H 0.97003 * 120.00372 * 179.97438 * 5 4 3 30 30 H 0.96994 * 120.00107 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.48268 * 303.68172 * 13 11 10 32 32 H 1.08997 * 109.48310 * 63.71070 * 13 11 10 33 33 H 1.09001 * 109.62751 * 65.08388 * 14 13 11 34 34 H 1.08995 * 109.62611 * 185.46926 * 14 13 11 35 35 H 0.96997 * 120.00141 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.62497 * 68.37185 * 22 15 14 37 37 H 1.08996 * 109.62461 * 188.93653 * 22 15 14 38 38 H 1.08997 * 109.47934 * 296.27364 * 23 11 10 39 39 H 1.09006 * 109.48147 * 56.31192 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2744 1.0958 0.0000 4 6 3.5584 0.6417 -0.0064 5 7 4.7120 1.4390 -0.0143 6 7 3.5298 -0.6911 -0.0005 7 6 2.2765 -1.0985 -0.0003 8 6 1.8270 -2.5010 -0.0003 9 8 0.6383 -2.7586 0.0004 10 7 2.7329 -3.4989 -0.0001 11 6 2.2858 -4.8941 -0.0007 12 1 1.3749 -4.9823 -0.5929 13 6 3.3760 -5.7771 -0.6100 14 6 2.8723 -7.2217 -0.6957 15 6 2.4164 -7.6544 0.6803 16 6 2.8730 -8.8290 1.2395 17 7 3.7163 -9.5890 0.5757 18 14 2.2950 -9.3401 2.9407 19 1 0.8181 -9.4955 2.9356 20 1 2.9269 -10.6319 3.3109 21 1 2.6798 -8.2994 3.9277 22 6 1.4463 -6.7656 1.4268 23 6 2.0017 -5.3375 1.4354 24 1 -0.3634 0.0003 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3635 0.8898 0.5141 27 1 1.9579 2.1284 0.0004 28 1 4.6334 2.4058 -0.0160 29 1 5.5886 1.0237 -0.0181 30 1 3.6808 -3.2934 -0.0003 31 1 3.6189 -5.4170 -1.6098 32 1 4.2670 -5.7390 0.0165 33 1 2.0361 -7.2772 -1.3927 34 1 3.6782 -7.8706 -1.0383 35 1 4.0373 -10.4156 0.9689 36 1 0.4781 -6.7789 0.9263 37 1 1.3369 -7.1221 2.4510 38 1 2.9252 -5.3101 2.0137 39 1 1.2706 -4.6658 1.8854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220097134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:18 Heat of formation + Delta-G solvation = -6.198543 kcal Electronic energy + Delta-G solvation = -21625.360506 eV Core-core repulsion = 18374.340215 eV Total energy + Delta-G solvation = -3251.020290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.12669 -40.65855 -38.42366 -36.01052 -35.36782 -33.97727 -33.16797 -31.50012 -30.14803 -28.90048 -27.63095 -24.84982 -23.46049 -23.13663 -21.96793 -21.31461 -21.01676 -18.91829 -17.96891 -17.60957 -17.16492 -17.05774 -16.50205 -16.41214 -16.01328 -15.57996 -15.21054 -14.87420 -14.54712 -14.44257 -14.15659 -14.03738 -13.93654 -13.61124 -13.41880 -12.78784 -12.66167 -12.55051 -12.01553 -11.86028 -11.64498 -11.59941 -11.37420 -11.14655 -10.86443 -10.69405 -10.53840 -10.45817 -9.97471 -8.34944 -8.16720 -6.10718 0.31616 1.40529 1.41808 1.49114 1.50360 1.76391 2.27580 2.41563 2.43870 2.88167 3.12257 3.55037 3.85909 4.03596 4.12498 4.17406 4.38652 4.42898 4.47980 4.70368 4.71810 4.83374 4.95701 5.06388 5.07043 5.19525 5.21290 5.22103 5.28324 5.54359 5.55454 5.65675 5.76018 5.82314 5.89628 6.34256 6.37748 6.67155 6.71365 6.94388 7.09197 7.43655 7.47376 8.94091 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.003913 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.811149 B = 7153.295331 C = 7462.724592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.406 5.406 3 C -0.088 4.088 4 C 0.261 3.739 5 N -0.847 5.847 6 N -0.504 5.504 7 C 0.130 3.870 8 C 0.601 3.399 9 O -0.569 6.569 10 N -0.691 5.691 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.102 4.102 14 C 0.011 3.989 15 C -0.501 4.501 16 C 0.027 3.973 17 N -0.928 5.928 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.266 1.266 22 C -0.010 4.010 23 C -0.106 4.106 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.220 0.780 28 H 0.419 0.581 29 H 0.404 0.596 30 H 0.413 0.587 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.001 0.999 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.052 0.948 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 24.285 -0.453 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.088 5.088 3 C -0.228 4.228 4 C 0.029 3.971 5 N -0.400 5.400 6 N -0.236 5.236 7 C -0.128 4.128 8 C 0.387 3.613 9 O -0.448 6.448 10 N -0.341 5.341 11 C 0.065 3.935 12 H 0.085 0.915 13 C -0.140 4.140 14 C -0.027 4.027 15 C -0.521 4.521 16 C -0.172 4.172 17 N -0.567 5.567 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.048 4.048 23 C -0.145 4.145 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.140 0.860 27 H 0.237 0.763 28 H 0.251 0.749 29 H 0.233 0.767 30 H 0.250 0.750 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.370 23.293 -0.448 23.417 hybrid contribution 0.039 -0.032 0.726 0.727 sum -2.331 23.260 0.277 23.379 Atomic orbital electron populations 1.22481 0.73610 1.06288 1.05165 1.45080 1.09053 1.04974 1.49704 1.22666 0.88763 0.93723 1.17692 1.17991 0.88681 0.87625 1.02848 1.41223 1.03211 1.07259 1.88262 1.69789 1.18669 1.12118 1.22999 1.21985 0.85651 0.89945 1.15176 1.16687 0.85413 0.82733 0.76497 1.90759 1.16706 1.84358 1.52996 1.45880 1.10353 1.05501 1.72319 1.20770 0.97882 0.77954 0.96921 0.91469 1.21720 0.96997 0.96356 0.98965 1.19285 0.96180 0.92159 0.95093 1.20590 1.24924 1.04554 1.01993 1.25534 0.94883 0.96114 1.00626 1.69939 1.33156 1.14031 1.39616 0.85845 0.78939 0.77210 0.81310 1.19386 1.21854 1.19144 1.19597 0.96059 0.93019 0.96092 1.21797 0.99873 0.97147 0.95722 0.89244 0.89577 0.86033 0.76342 0.74935 0.76732 0.75012 0.92349 0.92656 0.98015 0.94717 0.92688 0.96150 0.95368 0.92917 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.63 127.77 1.36 2.47 16 2 N -0.41 -9.29 3.18 -538.54 -1.71 -11.01 16 3 C -0.09 -1.59 11.61 83.53 0.97 -0.62 16 4 C 0.26 5.79 8.29 131.67 1.09 6.88 16 5 N -0.85 -12.28 9.17 -55.93 -0.51 -12.79 16 6 N -0.50 -14.58 10.89 -186.46 -2.03 -16.61 16 7 C 0.13 3.91 7.78 136.22 1.06 4.97 16 8 C 0.60 20.84 7.77 86.62 0.67 21.51 16 9 O -0.57 -21.81 14.33 -4.11 -0.06 -21.87 16 10 N -0.69 -23.83 5.07 -446.06 -2.26 -26.09 16 11 C 0.17 6.67 2.35 44.96 0.11 6.77 16 12 H 0.07 2.87 7.58 -2.38 -0.02 2.86 16 13 C -0.10 -4.22 5.40 30.66 0.17 -4.06 16 14 C 0.01 0.54 5.96 30.11 0.18 0.72 16 15 C -0.50 -26.61 5.51 -16.17 -0.09 -26.70 16 16 C 0.03 1.50 5.46 84.65 0.46 1.96 16 17 N -0.93 -54.38 12.73 21.45 0.27 -54.11 16 18 Si 0.94 43.98 26.80 68.60 1.84 45.81 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C -0.01 -0.45 5.59 30.10 0.17 -0.28 16 23 C -0.11 -4.47 5.50 30.66 0.17 -4.30 16 24 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.09 1.92 6.33 -2.39 -0.02 1.91 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.22 1.85 8.06 -2.91 -0.02 1.82 16 28 H 0.42 3.24 8.96 -92.71 -0.83 2.41 16 29 H 0.40 5.68 8.96 -92.71 -0.83 4.85 16 30 H 0.41 13.11 8.27 -92.71 -0.77 12.34 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.03 1.90 7.08 -2.39 -0.02 1.89 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.03 1.29 5.17 -2.39 -0.01 1.28 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -68.38 319.20 0.53 -67.85 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -1.32 Total: 19.49 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.31 Total: 9.32 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.24 Total: -120.61 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.84 Total: 45.81 kcal Total: -68.38 0.53 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220097134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.647 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds