Wall clock time and date at job start Wed Apr 15 2020 11:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35495 * 126.98340 * 2 1 4 4 C 1.50701 * 126.34173 * 359.76832 * 3 2 1 5 5 N 1.46502 * 109.46547 * 90.00728 * 4 3 2 6 6 C 1.34780 * 119.99497 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00357 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99719 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47103 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47103 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00030 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99946 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00039 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99749 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47005 * 90.00476 * 14 12 10 16 16 H 1.48509 * 109.47180 * 210.00245 * 14 12 10 17 17 H 1.48500 * 109.47354 * 330.00295 * 14 12 10 18 18 N 1.30520 * 107.30888 * 179.73983 * 3 2 1 19 19 N 1.28595 * 109.67181 * 359.97438 * 18 3 2 20 20 C 1.30528 * 109.67405 * 0.02562 * 19 18 3 21 21 C 1.50701 * 126.34540 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.50138 * 8.74495 * 21 20 19 23 23 C 1.52998 * 117.49887 * 300.08360 * 21 20 19 24 24 H 1.08993 * 109.47075 * 90.02317 * 1 2 3 25 25 H 1.08993 * 109.47609 * 210.03067 * 1 2 3 26 26 H 1.09008 * 109.46926 * 330.02896 * 1 2 3 27 27 H 1.09005 * 109.47105 * 210.00190 * 4 3 2 28 28 H 1.08997 * 109.47618 * 330.00482 * 4 3 2 29 29 H 0.96997 * 120.00766 * 359.97438 * 5 4 3 30 30 H 1.08997 * 109.47405 * 300.00318 * 8 6 5 31 31 H 1.09001 * 109.47009 * 60.00791 * 8 6 5 32 32 H 1.08997 * 109.47148 * 300.00351 * 9 8 6 33 33 H 1.08997 * 109.47064 * 60.00218 * 9 8 6 34 34 H 0.97002 * 120.00291 * 180.02562 * 13 12 10 35 35 H 1.08997 * 115.54894 * 154.41456 * 21 20 19 36 36 H 1.09003 * 117.49964 * 0.02562 * 22 21 20 37 37 H 1.09000 * 117.49877 * 145.01826 * 22 21 20 38 38 H 1.08998 * 117.50244 * 214.97727 * 23 21 20 39 39 H 1.08999 * 117.49963 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 6 1.8477 2.5260 -0.0049 5 7 1.7033 2.9971 1.3748 6 6 1.3228 4.2672 1.6168 7 8 1.0995 5.0200 0.6924 8 6 1.1737 4.7517 3.0360 9 6 0.7348 6.2174 3.0311 10 6 0.5864 6.7020 4.4503 11 1 0.7855 6.0319 5.2733 12 6 0.1962 8.0011 4.6979 13 7 0.0671 8.4242 5.9363 14 14 -0.1476 9.1605 3.2741 15 1 -1.5798 9.0657 2.8933 16 1 0.1646 10.5535 3.6835 17 1 0.6991 8.7841 2.1136 18 7 3.5091 0.6429 0.0057 19 7 3.5090 -0.6430 0.0097 20 6 2.2799 -1.0824 0.0063 21 6 1.8475 -2.5261 0.0086 22 6 2.9290 -3.5871 0.2219 23 6 2.3009 -3.4012 -1.1616 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 -0.8896 0.5143 26 1 -0.3633 0.8903 0.5134 27 1 2.5977 3.1282 -0.5178 28 1 0.8925 2.6175 -0.5219 29 1 1.8815 2.3950 2.1141 30 1 0.4233 4.1498 3.5484 31 1 2.1287 4.6598 3.5534 32 1 1.4849 6.8196 2.5184 33 1 -0.2201 6.3090 2.5137 34 1 -0.2077 9.3380 6.1105 35 1 0.8614 -2.7207 0.4301 36 1 3.9532 -3.2411 0.3610 37 1 2.6541 -4.4800 0.7834 38 1 1.6133 -4.1719 -1.5098 39 1 2.9116 -2.9327 -1.9334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261212488.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:25 Heat of formation + Delta-G solvation = 60.721506 kcal Electronic energy + Delta-G solvation = -20654.562528 eV Core-core repulsion = 17406.444108 eV Total energy + Delta-G solvation = -3248.118419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.51710 -39.36594 -37.66623 -35.62840 -34.76427 -33.51508 -31.56693 -30.85116 -28.19847 -27.39101 -25.45859 -24.51259 -22.87190 -21.59016 -21.10659 -20.58289 -19.80851 -17.66875 -17.30601 -16.82961 -16.30185 -15.98896 -15.74611 -15.26556 -15.00933 -14.19833 -14.02212 -13.87225 -13.64130 -13.36616 -13.18013 -12.60500 -12.56582 -12.28732 -12.03366 -11.76910 -11.50964 -11.44589 -11.08217 -10.98464 -10.61425 -10.53392 -10.20659 -10.08454 -9.82401 -9.56446 -9.21512 -9.11113 -9.09734 -8.52344 -6.04363 -4.03422 1.27368 2.00146 2.40485 2.99596 3.36425 3.36686 3.43089 3.44748 3.54246 3.73795 3.91086 4.12380 4.31253 4.35394 4.47026 4.49497 4.62282 4.69164 4.90367 5.12114 5.16731 5.25666 5.30993 5.38526 5.51196 5.58064 5.61464 5.70651 5.79916 6.02254 6.05535 6.34123 6.43184 6.64155 7.32659 7.40679 7.58831 7.76743 8.42088 8.44542 8.54127 8.98484 9.58378 11.08431 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042277 B = 0.002819 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.141280 B = 9930.412504 C =10068.165266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.464 5.464 3 C 0.159 3.841 4 C 0.210 3.790 5 N -0.739 5.739 6 C 0.515 3.485 7 O -0.536 6.536 8 C -0.121 4.121 9 C 0.002 3.998 10 C -0.526 4.526 11 H 0.073 0.927 12 C 0.069 3.931 13 N -0.903 5.903 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.260 1.260 18 N -0.270 5.270 19 N -0.291 5.291 20 C 0.209 3.791 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.157 4.157 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.401 0.599 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -25.605 -13.665 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.154 5.154 3 C -0.108 4.108 4 C 0.084 3.916 5 N -0.395 5.395 6 C 0.304 3.696 7 O -0.411 6.411 8 C -0.161 4.161 9 C -0.036 4.036 10 C -0.564 4.564 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.185 1.185 18 N -0.112 5.112 19 N -0.131 5.131 20 C -0.058 4.058 21 C -0.112 4.112 22 C -0.185 4.185 23 C -0.195 4.195 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.235 0.765 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.087 -24.835 -14.239 28.648 hybrid contribution -1.660 0.367 -0.253 1.719 sum -0.573 -24.468 -14.492 28.443 Atomic orbital electron populations 1.22208 0.75010 1.05693 1.04586 1.45920 1.09247 1.06154 1.54096 1.24738 0.87457 0.91918 1.06701 1.19400 1.02403 0.83597 0.86207 1.46211 1.72433 1.13985 1.06915 1.21604 0.74625 0.79937 0.93463 1.90672 1.49216 1.54537 1.46690 1.21684 1.03362 1.01183 0.89833 1.19378 0.96912 0.89576 0.97760 1.21101 1.46589 0.97575 0.91108 0.90935 1.24977 0.94669 0.98089 0.95526 1.69908 1.47902 1.17450 1.18923 0.86792 0.79273 0.79962 0.83497 1.20279 1.21423 1.18474 1.74334 1.16903 1.02948 1.16965 1.74255 1.16812 1.03064 1.19012 1.23768 0.87265 0.90585 1.04143 1.20112 1.00610 0.83284 1.07202 1.23054 0.98472 0.98171 0.98794 1.23093 1.03427 1.01015 0.92006 0.89546 0.88795 0.88456 0.87986 0.89786 0.76451 0.89573 0.89320 0.95703 0.96255 0.92692 0.85817 0.87057 0.87680 0.87708 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.71 59.85 0.64 0.99 16 2 N -0.46 -4.33 3.15 -118.00 -0.37 -4.70 16 3 C 0.16 1.88 7.40 -154.99 -1.15 0.74 16 4 C 0.21 2.48 5.84 -5.19 -0.03 2.45 16 5 N -0.74 -9.64 5.55 -61.47 -0.34 -9.98 16 6 C 0.51 8.92 7.83 -10.98 -0.09 8.84 16 7 O -0.54 -11.26 15.98 5.56 0.09 -11.17 16 8 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 14 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 18 N -0.27 -3.96 12.21 32.80 0.40 -3.56 16 19 N -0.29 -3.98 11.83 32.80 0.39 -3.59 16 20 C 0.21 2.15 7.55 -154.98 -1.17 0.98 16 21 C -0.09 -0.60 5.97 -91.77 -0.55 -1.15 16 22 C -0.15 -0.88 10.15 -26.69 -0.27 -1.15 16 23 C -0.16 -0.86 10.24 -26.69 -0.27 -1.13 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.28 7.37 -51.93 -0.38 -0.10 16 26 H 0.10 0.51 7.82 -51.92 -0.41 0.10 16 27 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 0.88 7.86 -51.93 -0.41 0.48 16 29 H 0.40 4.55 8.46 -40.82 -0.35 4.21 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 33 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.12 0.52 7.48 -51.93 -0.39 0.13 16 36 H 0.11 0.86 7.92 -51.93 -0.41 0.45 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -36.46 335.59 -7.89 -44.35 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.65 Total: -1.77 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -3.56 Total: -5.24 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.85 Total: -48.95 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.46 -7.89 -44.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212488.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.069 kcal (2) G-P(sol) polarization free energy of solvation -36.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds