Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99870 * 2 1 4 4 C 1.38990 * 120.00366 * 180.02562 * 2 1 3 5 5 C 1.39038 * 119.66387 * 5.01793 * 4 2 1 6 6 C 1.38473 * 119.24687 * 180.02562 * 5 4 2 7 7 C 1.38600 * 118.57631 * 359.73850 * 6 5 4 8 8 C 1.38861 * 119.26808 * 0.50399 * 7 6 5 9 9 N 1.39389 * 119.64858 * 179.75437 * 8 7 6 10 10 C 1.34775 * 119.99719 * 185.07216 * 9 8 7 11 11 O 1.21577 * 120.00344 * 354.86418 * 10 9 8 12 12 N 1.34776 * 120.00246 * 174.86002 * 10 9 8 13 13 C 1.46501 * 119.99803 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00398 * 179.72861 * 12 10 9 15 15 C 1.50700 * 109.47473 * 89.99759 * 14 12 10 16 16 H 1.08000 * 119.99701 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00491 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99881 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46820 * 120.00547 * 19 17 15 22 22 H 1.48499 * 109.47378 * 240.00106 * 19 17 15 23 23 N 1.32442 * 119.66798 * 185.00321 * 4 2 1 24 24 H 1.08998 * 109.47076 * 269.99883 * 1 2 3 25 25 H 1.08994 * 109.47123 * 30.00071 * 1 2 3 26 26 H 1.08998 * 109.46695 * 149.99929 * 1 2 3 27 27 H 1.09001 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47332 * 300.00197 * 3 2 1 29 29 H 1.09007 * 109.47163 * 60.00462 * 3 2 1 30 30 H 1.08000 * 120.37763 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.71359 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.36890 * 180.28673 * 7 6 5 33 33 H 0.96997 * 120.00255 * 5.07876 * 9 8 7 34 34 H 1.09001 * 109.46824 * 89.99990 * 13 12 10 35 35 H 1.09000 * 109.47831 * 210.00114 * 13 12 10 36 36 H 1.08997 * 109.47189 * 330.00578 * 13 12 10 37 37 H 1.09002 * 109.47438 * 209.99701 * 14 12 10 38 38 H 1.08994 * 109.47182 * 329.99913 * 14 12 10 39 39 H 0.96996 * 120.00524 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1600 -1.2036 -0.0005 5 6 1.4619 -2.4013 -0.1067 6 6 2.1630 -3.5955 -0.1059 7 6 3.5446 -3.5530 -0.0040 8 6 4.1799 -2.3230 0.1042 9 7 5.5686 -2.2714 0.2123 10 6 6.1848 -1.0909 0.4201 11 8 5.5400 -0.0602 0.4203 12 7 7.5159 -1.0529 0.6280 13 6 8.2929 -2.2949 0.6285 14 6 8.1867 0.2307 0.8480 15 6 8.2019 0.5434 2.3222 16 1 7.7568 -0.1454 3.0249 17 6 8.7850 1.7083 2.7739 18 7 9.3274 2.5469 1.9182 19 14 8.8032 2.0962 4.6011 20 1 8.1328 1.0006 5.3464 21 1 10.2078 2.2234 5.0660 22 1 8.0840 3.3726 4.8434 23 7 3.4806 -1.1981 0.0998 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3632 -0.8900 -0.5138 27 1 3.2691 1.0696 0.0005 28 1 1.9342 1.8403 -0.8899 29 1 1.9342 1.8403 0.8901 30 1 0.3850 -2.4004 -0.1882 31 1 1.6447 -4.5395 -0.1875 32 1 4.1205 -4.4667 -0.0051 33 1 6.0915 -3.0849 0.1378 34 1 8.6407 -2.5063 -0.3827 35 1 9.1505 -2.1869 1.2925 36 1 7.6656 -3.1158 0.9758 37 1 9.2104 0.1739 0.4781 38 1 7.6511 1.0165 0.3155 39 1 9.7373 3.3666 2.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152803723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 51.641946 kcal Electronic energy + Delta-G solvation = -21740.287512 eV Core-core repulsion = 18491.775373 eV Total energy + Delta-G solvation = -3248.512139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45971 -39.01536 -36.52237 -34.77589 -34.01932 -32.51388 -31.93462 -29.45284 -28.04081 -27.52509 -25.77743 -25.10776 -23.49893 -22.04593 -21.41304 -19.37630 -17.95880 -16.98769 -16.48963 -16.32592 -15.62451 -15.35622 -15.24693 -14.71867 -14.70849 -13.96005 -13.88003 -13.45878 -13.13786 -12.86246 -12.48853 -12.44582 -12.28984 -12.15708 -11.83895 -11.74306 -11.43523 -11.16760 -10.87607 -10.55437 -10.54732 -10.10735 -9.86001 -9.59937 -9.50870 -8.53088 -8.43847 -8.39429 -7.57911 -7.24212 -5.99993 -4.04016 1.59206 1.71728 2.94791 3.27735 3.32524 3.40196 3.45495 3.89984 4.35461 4.45534 4.53527 4.82538 5.02212 5.22756 5.30813 5.33779 5.39672 5.43333 5.45075 5.56948 5.63537 5.73309 5.87994 5.88973 6.03729 6.16743 6.39950 6.46054 6.52742 6.72430 7.07514 7.12944 7.39462 7.54334 7.60897 7.68734 7.98392 8.28551 8.43736 8.77418 8.98086 9.40390 9.61989 11.07878 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.004909 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.516313 B = 5702.126478 C = 6637.484799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.087 3.913 4 C 0.431 3.569 5 C -0.288 4.288 6 C -0.008 4.008 7 C -0.282 4.282 8 C 0.439 3.561 9 N -0.676 5.676 10 C 0.687 3.313 11 O -0.523 6.523 12 N -0.616 5.616 13 C 0.083 3.917 14 C 0.261 3.739 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.525 5.525 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.408 0.592 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -12.415 -5.549 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.329 5.329 3 C -0.056 4.056 4 C 0.195 3.805 5 C -0.314 4.314 6 C -0.034 4.034 7 C -0.308 4.308 8 C 0.203 3.797 9 N -0.326 5.326 10 C 0.388 3.612 11 O -0.393 6.393 12 N -0.353 5.353 13 C -0.061 4.061 14 C 0.142 3.858 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.248 5.248 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.580 -10.406 -5.454 17.957 hybrid contribution -0.026 -0.942 1.017 1.387 sum -13.606 -11.348 -4.437 18.264 Atomic orbital electron populations 1.21636 0.79078 1.02592 1.01244 1.46216 1.04716 1.03511 1.78438 1.21768 1.00838 0.83492 0.99488 1.18110 0.87678 0.85828 0.88872 1.21200 1.00545 0.91887 1.17761 1.20910 0.92894 0.97475 0.92120 1.21025 0.95484 0.96464 1.17862 1.17790 0.83681 0.88546 0.89672 1.43210 1.04068 1.11001 1.74281 1.16028 0.82596 0.83177 0.79414 1.90954 1.63189 1.30808 1.54335 1.47545 1.04675 1.09581 1.73538 1.21585 0.97188 0.86480 1.00880 1.19212 0.91727 0.78146 0.96729 1.21503 1.36789 1.05404 0.92503 0.92504 1.24915 0.95329 0.95868 0.97964 1.69939 1.38425 1.11256 1.33879 0.86458 0.77460 0.78378 0.85199 1.19899 1.21020 1.20907 1.67022 1.05586 1.28975 1.23231 0.93302 0.91342 0.91245 0.86983 0.93603 0.93403 0.85559 0.85188 0.85501 0.75494 0.93787 0.90361 0.93231 0.94876 0.93709 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.32 59.85 0.62 1.59 16 2 N -0.62 -9.12 3.39 -189.69 -0.64 -9.76 16 3 C 0.09 1.37 10.71 59.85 0.64 2.02 16 4 C 0.43 7.15 7.37 -155.03 -1.14 6.01 16 5 C -0.29 -3.77 9.27 -39.20 -0.36 -4.13 16 6 C -0.01 -0.09 10.16 -39.36 -0.40 -0.49 16 7 C -0.28 -3.74 9.93 -39.22 -0.39 -4.13 16 8 C 0.44 7.65 7.42 -154.70 -1.15 6.51 16 9 N -0.68 -11.74 5.22 -15.84 -0.08 -11.82 16 10 C 0.69 15.37 8.24 -86.92 -0.72 14.65 16 11 O -0.52 -13.89 13.57 5.30 0.07 -13.82 16 12 N -0.62 -13.45 2.86 -188.75 -0.54 -13.99 16 13 C 0.08 1.31 10.15 59.85 0.61 1.92 16 14 C 0.26 6.94 5.16 -5.20 -0.03 6.91 16 15 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 19 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 N -0.53 -10.35 6.38 -11.56 -0.07 -10.43 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.07 0.57 5.97 -51.93 -0.31 0.26 16 27 H 0.11 2.28 6.20 -51.93 -0.32 1.96 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.13 1.29 6.01 -52.49 -0.32 0.98 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.41 5.37 6.51 -40.82 -0.27 5.11 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 36 H 0.05 0.62 6.45 -51.93 -0.33 0.29 16 37 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -35.95 326.70 -8.64 -44.59 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.27 Total: 2.07 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: -2.74 Total: 17.10 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -0.60 Total: -72.11 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.07 Total: -13.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.95 -8.64 -44.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152803723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.235 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds