Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99870 * 2 1 4 4 C 1.38990 * 120.00366 * 180.02562 * 2 1 3 5 5 C 1.39038 * 119.66387 * 5.01793 * 4 2 1 6 6 C 1.38473 * 119.24687 * 180.02562 * 5 4 2 7 7 C 1.38600 * 118.57631 * 359.73850 * 6 5 4 8 8 C 1.38861 * 119.26808 * 0.50399 * 7 6 5 9 9 N 1.39389 * 119.64858 * 179.75437 * 8 7 6 10 10 C 1.34775 * 119.99719 * 185.07216 * 9 8 7 11 11 O 1.21577 * 120.00344 * 354.86418 * 10 9 8 12 12 N 1.34776 * 120.00246 * 174.86002 * 10 9 8 13 13 C 1.46501 * 119.99803 * 359.97438 * 12 10 9 14 14 C 1.46496 * 120.00398 * 179.72861 * 12 10 9 15 15 C 1.50700 * 109.47473 * 89.99759 * 14 12 10 16 16 H 1.08000 * 119.99701 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00491 * 179.97438 * 15 14 12 18 18 N 1.31514 * 119.99881 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46820 * 120.00547 * 19 17 15 22 22 H 1.48499 * 109.47378 * 240.00106 * 19 17 15 23 23 N 1.32442 * 119.66798 * 185.00321 * 4 2 1 24 24 H 1.08998 * 109.47076 * 269.99883 * 1 2 3 25 25 H 1.08994 * 109.47123 * 30.00071 * 1 2 3 26 26 H 1.08998 * 109.46695 * 149.99929 * 1 2 3 27 27 H 1.09001 * 109.47070 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47332 * 300.00197 * 3 2 1 29 29 H 1.09007 * 109.47163 * 60.00462 * 3 2 1 30 30 H 1.08000 * 120.37763 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.71359 * 180.02562 * 6 5 4 32 32 H 1.08003 * 120.36890 * 180.28673 * 7 6 5 33 33 H 0.96997 * 120.00255 * 5.07876 * 9 8 7 34 34 H 1.09001 * 109.46824 * 89.99990 * 13 12 10 35 35 H 1.09000 * 109.47831 * 210.00114 * 13 12 10 36 36 H 1.08997 * 109.47189 * 330.00578 * 13 12 10 37 37 H 1.09002 * 109.47438 * 209.99701 * 14 12 10 38 38 H 1.08994 * 109.47182 * 329.99913 * 14 12 10 39 39 H 0.96996 * 120.00524 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1600 -1.2036 -0.0005 5 6 1.4619 -2.4013 -0.1067 6 6 2.1630 -3.5955 -0.1059 7 6 3.5446 -3.5530 -0.0040 8 6 4.1799 -2.3230 0.1042 9 7 5.5686 -2.2714 0.2123 10 6 6.1848 -1.0909 0.4201 11 8 5.5400 -0.0602 0.4203 12 7 7.5159 -1.0529 0.6280 13 6 8.2929 -2.2949 0.6285 14 6 8.1867 0.2307 0.8480 15 6 8.2019 0.5434 2.3222 16 1 7.7568 -0.1454 3.0249 17 6 8.7850 1.7083 2.7739 18 7 9.3274 2.5469 1.9182 19 14 8.8032 2.0962 4.6011 20 1 8.1328 1.0006 5.3464 21 1 10.2078 2.2234 5.0660 22 1 8.0840 3.3726 4.8434 23 7 3.4806 -1.1981 0.0998 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3632 -0.8900 -0.5138 27 1 3.2691 1.0696 0.0005 28 1 1.9342 1.8403 -0.8899 29 1 1.9342 1.8403 0.8901 30 1 0.3850 -2.4004 -0.1882 31 1 1.6447 -4.5395 -0.1875 32 1 4.1205 -4.4667 -0.0051 33 1 6.0915 -3.0849 0.1378 34 1 8.6407 -2.5063 -0.3827 35 1 9.1505 -2.1869 1.2925 36 1 7.6656 -3.1158 0.9758 37 1 9.2104 0.1739 0.4781 38 1 7.6511 1.0165 0.3155 39 1 9.7373 3.3666 2.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152803723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 27.806614 kcal Electronic energy + Delta-G solvation = -21741.321089 eV Core-core repulsion = 18491.775373 eV Total energy + Delta-G solvation = -3249.545716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76182 -40.45401 -37.70477 -36.51138 -35.49964 -34.56372 -33.08227 -30.75207 -29.60451 -28.82325 -27.33361 -26.23142 -25.26566 -23.49810 -22.56412 -20.89710 -19.29964 -18.68560 -18.41150 -17.55678 -16.87644 -16.67485 -16.57415 -16.33527 -16.06144 -15.63572 -15.04956 -14.81540 -14.63005 -14.17122 -13.98918 -13.76404 -13.46459 -13.42824 -13.23749 -13.11305 -12.85816 -12.81924 -12.54270 -12.46299 -12.20179 -11.92193 -11.65334 -11.17652 -10.87935 -10.63963 -9.87016 -9.77897 -9.32000 -8.33025 -8.20564 -6.35669 0.44831 0.70095 1.34580 1.37392 1.48658 1.65025 2.11648 2.31196 2.41181 3.03452 3.08347 3.17919 3.77120 4.13445 4.22684 4.32041 4.38439 4.43866 4.49428 4.53441 4.62134 4.66905 4.77743 4.83727 4.89496 4.98267 5.06921 5.15404 5.22082 5.41925 5.48626 5.57086 5.73627 5.88756 5.92280 6.08042 6.21929 6.47007 6.73079 6.99231 7.31163 7.50101 7.81135 8.85461 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018545 B = 0.004909 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.516313 B = 5702.126478 C = 6637.484799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.626 5.626 3 C 0.095 3.905 4 C 0.397 3.603 5 C -0.275 4.275 6 C -0.002 4.002 7 C -0.265 4.265 8 C 0.395 3.605 9 N -0.660 5.660 10 C 0.682 3.318 11 O -0.578 6.578 12 N -0.624 5.624 13 C 0.077 3.923 14 C 0.279 3.721 15 C -0.539 4.539 16 H 0.048 0.952 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.282 1.282 23 N -0.580 5.580 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.427 0.573 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.029 0.971 38 H -0.003 1.003 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -15.448 -5.035 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.341 5.341 3 C -0.049 4.049 4 C 0.161 3.839 5 C -0.301 4.301 6 C -0.028 4.028 7 C -0.291 4.291 8 C 0.162 3.838 9 N -0.312 5.312 10 C 0.383 3.617 11 O -0.453 6.453 12 N -0.361 5.361 13 C -0.065 4.065 14 C 0.157 3.843 15 C -0.578 4.578 16 H 0.066 0.934 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.196 1.196 21 H -0.191 1.191 22 H -0.208 1.208 23 N -0.304 5.304 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.177 0.823 31 H 0.197 0.803 32 H 0.181 0.819 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.341 -13.533 -4.956 21.049 hybrid contribution 0.419 -0.062 0.786 0.893 sum -14.922 -13.596 -4.170 20.613 Atomic orbital electron populations 1.21881 0.76159 1.04444 1.02214 1.46475 1.06384 1.02519 1.78674 1.21503 0.98163 0.84796 1.00450 1.18619 0.87235 0.87591 0.90408 1.21618 1.02144 0.90929 1.15372 1.21517 0.92297 0.98912 0.90055 1.21426 0.96513 0.95826 1.15330 1.18275 0.83362 0.89803 0.92353 1.42810 1.04635 1.09827 1.73970 1.16270 0.82469 0.84007 0.78991 1.90923 1.64466 1.33262 1.56612 1.47418 1.05159 1.09954 1.73579 1.21893 0.97075 0.84725 1.02781 1.18645 0.90941 0.79594 0.95135 1.21718 1.36947 1.05787 0.93359 0.93417 1.25805 0.94736 0.95551 1.02844 1.70049 1.38905 1.11711 1.36067 0.85390 0.78293 0.77886 0.79330 1.19616 1.19053 1.20809 1.66830 1.07734 1.31253 1.24534 0.92640 0.89784 0.89130 0.92084 0.91862 0.93128 0.82330 0.80296 0.81906 0.73212 0.90966 0.90882 0.89602 0.95275 0.98495 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.69 10.32 127.77 1.32 3.01 16 2 N -0.63 -18.61 3.39 -754.06 -2.56 -21.16 16 3 C 0.09 3.20 10.71 127.77 1.37 4.56 16 4 C 0.40 13.07 7.37 133.03 0.98 14.05 16 5 C -0.27 -6.34 9.27 22.52 0.21 -6.14 16 6 C 0.00 -0.04 10.16 22.41 0.23 0.18 16 7 C -0.27 -6.17 9.93 22.51 0.22 -5.94 16 8 C 0.40 13.66 7.42 132.85 0.99 14.64 16 9 N -0.66 -22.90 5.22 -322.29 -1.68 -24.59 16 10 C 0.68 31.85 8.24 179.05 1.47 33.32 16 11 O -0.58 -33.15 13.57 -3.96 -0.05 -33.21 16 12 N -0.62 -28.15 2.86 -869.34 -2.48 -30.63 16 13 C 0.08 2.36 10.15 127.77 1.30 3.66 16 14 C 0.28 15.64 5.16 85.63 0.44 16.08 16 15 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 17 C 0.01 0.56 5.46 84.65 0.46 1.03 16 18 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 19 Si 0.97 46.44 29.54 68.60 2.03 48.46 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 23 N -0.58 -23.65 6.38 -190.48 -1.21 -24.87 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 26 H 0.09 1.20 5.97 -2.39 -0.01 1.18 16 27 H 0.06 2.74 6.20 -2.39 -0.01 2.72 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.16 2.52 6.01 -2.91 -0.02 2.50 16 31 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.43 10.51 6.51 -92.71 -0.60 9.91 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 36 H 0.09 1.96 6.45 -2.39 -0.02 1.95 16 37 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 38 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -85.84 326.70 4.01 -81.82 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.46 Total: 14.75 kcal Atomic # 6 Polarization: 37.18 SS G_CDS: 9.23 Total: 46.41 kcal Atomic # 7 Polarization: -150.58 SS G_CDS: -7.65 Total: -158.23 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -85.84 4.01 -81.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152803723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.629 kcal (2) G-P(sol) polarization free energy of solvation -85.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds