Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00442 * 3 2 1 5 5 C 1.53003 * 117.49371 * 243.61805 * 4 3 2 6 6 C 1.53001 * 117.49608 * 174.99880 * 4 3 2 7 7 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 8 8 O 1.21592 * 119.99905 * 179.97438 * 7 2 1 9 9 N 1.34776 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.40199 * 119.99878 * 180.02562 * 9 7 2 11 11 C 1.40403 * 125.97195 * 359.70705 * 10 9 7 12 12 C 1.35242 * 107.86493 * 179.83306 * 11 10 9 13 13 N 1.34971 * 107.86074 * 0.42977 * 12 11 10 14 14 C 1.46497 * 125.97851 * 179.70443 * 13 12 11 15 15 C 1.50703 * 109.46736 * 125.00020 * 14 13 12 16 16 H 1.07998 * 120.00350 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99386 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99766 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00435 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46769 * 90.00163 * 19 17 15 21 21 H 1.48500 * 109.47223 * 210.00027 * 19 17 15 22 22 H 1.48502 * 109.47122 * 330.00435 * 19 17 15 23 23 N 1.31208 * 125.96962 * 180.02562 * 10 9 7 24 24 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 25 25 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 26 26 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 27 27 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 28 28 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 29 29 H 1.08995 * 115.55630 * 29.32490 * 4 3 2 30 30 H 1.08998 * 117.50656 * 0.02562 * 5 4 3 31 31 H 1.09001 * 117.49674 * 145.02590 * 5 4 3 32 32 H 1.09003 * 117.49710 * 214.97494 * 6 4 3 33 33 H 1.08998 * 117.50185 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99930 * 359.97438 * 9 7 2 35 35 H 1.07999 * 126.06505 * 0.02562 * 11 10 9 36 36 H 1.07997 * 126.07009 * 180.16177 * 12 11 10 37 37 H 1.08998 * 109.47593 * 245.00310 * 14 13 12 38 38 H 1.09004 * 109.46893 * 5.00649 * 14 13 12 39 39 H 0.96994 * 120.00068 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7103 1.4425 5 6 1.8015 3.0145 1.9076 6 6 3.3100 2.9590 1.6579 7 6 2.1389 -1.1672 -0.0005 8 8 3.3548 -1.1672 -0.0010 9 7 1.4650 -2.3344 -0.0016 10 6 2.1661 -3.5485 -0.0016 11 6 3.5625 -3.6946 -0.0064 12 6 3.8413 -5.0179 -0.0008 13 7 2.6695 -5.6878 -0.0025 14 6 2.5108 -7.1441 -0.0041 15 6 1.6452 -7.5563 1.1587 16 1 1.2523 -6.8083 1.8313 17 6 1.3550 -8.8885 1.3637 18 7 0.5991 -9.2482 2.3782 19 14 2.0339 -10.1823 0.2000 20 1 3.3536 -10.6498 0.6952 21 1 1.0947 -11.3307 0.1342 22 1 2.1933 -9.5950 -1.1546 23 7 1.6318 -4.7469 -0.0030 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6083 2.0284 -0.5138 28 1 3.1498 1.1384 -0.5139 29 1 2.5439 0.9052 2.1715 30 1 1.1912 3.5577 1.1861 31 1 1.4643 3.0675 2.9428 32 1 3.9652 2.9755 2.5289 33 1 3.6927 3.4657 0.7720 34 1 0.4950 -2.3344 -0.0016 35 1 4.2856 -2.8924 -0.0103 36 1 4.8265 -5.4602 -0.0001 37 1 2.0405 -7.4574 -0.9362 38 1 3.4891 -7.6164 0.0859 39 1 0.3946 -10.1854 2.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173342496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = 73.772408 kcal Electronic energy + Delta-G solvation = -20972.783400 eV Core-core repulsion = 17725.230910 eV Total energy + Delta-G solvation = -3247.552490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28626 -41.10127 -38.47988 -36.25765 -36.19179 -35.12153 -33.03041 -30.99102 -29.31536 -28.77169 -27.06683 -24.54589 -23.20852 -22.93343 -22.07004 -21.40683 -20.59269 -19.10356 -19.00146 -18.14380 -17.49754 -17.00318 -16.62991 -16.26422 -15.84636 -15.53057 -15.06848 -14.84983 -14.69856 -14.35977 -14.16212 -13.88199 -13.80227 -13.58121 -13.16443 -12.96485 -12.58389 -12.51974 -12.31593 -12.30313 -11.82936 -11.63813 -11.47695 -11.37239 -11.05604 -10.86457 -10.81418 -9.87500 -9.68908 -9.02502 -8.37176 -6.47445 1.03907 1.11809 1.37178 1.40497 1.50210 1.67727 2.02497 2.29593 2.38045 2.84372 2.94992 2.95788 3.81591 3.91524 4.03081 4.07341 4.17732 4.21687 4.34571 4.55362 4.60292 4.63175 4.79645 4.81645 4.82862 4.86420 4.88754 4.93559 5.05645 5.11527 5.24665 5.27074 5.29309 5.57488 5.73342 5.91200 6.02190 6.41825 6.55627 6.61839 7.07792 7.15686 7.37608 8.80074 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037194 B = 0.003158 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.635727 B = 8862.882456 C = 9074.741462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.618 5.618 3 C 0.166 3.834 4 C -0.186 4.186 5 C -0.163 4.163 6 C -0.174 4.174 7 C 0.708 3.292 8 O -0.598 6.598 9 N -0.639 5.639 10 C 0.282 3.718 11 C -0.294 4.294 12 C 0.062 3.938 13 N -0.345 5.345 14 C 0.240 3.760 15 C -0.547 4.547 16 H 0.025 0.975 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.350 5.350 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.417 0.583 35 H 0.166 0.834 36 H 0.211 0.789 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 22.652 -7.074 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.355 5.355 3 C 0.044 3.956 4 C -0.205 4.205 5 C -0.200 4.200 6 C -0.212 4.212 7 C 0.409 3.591 8 O -0.476 6.476 9 N -0.293 5.293 10 C 0.027 3.973 11 C -0.325 4.325 12 C -0.086 4.086 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.162 1.162 23 N -0.181 5.181 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.256 0.744 35 H 0.184 0.816 36 H 0.228 0.772 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.252 21.768 -6.997 22.975 hybrid contribution 0.047 -0.505 0.379 0.633 sum 2.299 21.262 -6.618 22.387 Atomic orbital electron populations 1.22076 0.77212 1.04577 1.03523 1.47048 1.07961 1.03563 1.76884 1.21065 0.97398 0.82814 0.94343 1.22642 1.07627 0.92139 0.98112 1.23150 0.95376 0.98521 1.02928 1.23011 0.94291 0.99957 1.03932 1.15823 0.84949 0.80464 0.77909 1.90815 1.12722 1.86035 1.58070 1.41624 1.10136 1.01056 1.76435 1.19170 0.91706 0.85753 1.00713 1.21722 0.94190 0.96507 1.20090 1.23236 0.92903 0.92240 1.00239 1.48499 1.02744 1.06652 1.54833 1.19889 0.99278 0.71453 0.97390 1.21243 1.32377 0.93409 1.11500 0.95619 1.25936 0.94600 1.00766 0.97178 1.70054 1.38428 1.18352 1.31365 0.85603 0.79098 0.77723 0.79869 1.17732 1.20613 1.16192 1.77294 1.13823 0.96170 1.30768 0.90483 0.91686 0.87809 0.86719 0.90919 0.90709 0.86568 0.88900 0.89131 0.87281 0.74366 0.81628 0.77194 0.93616 0.90007 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.20 127.77 1.30 2.19 16 2 N -0.62 -12.96 2.87 -864.92 -2.49 -15.44 16 3 C 0.17 2.84 5.69 86.38 0.49 3.34 16 4 C -0.19 -3.27 6.01 -10.79 -0.06 -3.34 16 5 C -0.16 -1.92 10.18 30.60 0.31 -1.61 16 6 C -0.17 -2.44 10.25 30.60 0.31 -2.13 16 7 C 0.71 21.89 8.25 179.06 1.48 23.37 16 8 O -0.60 -22.33 13.05 -4.01 -0.05 -22.38 16 9 N -0.64 -21.15 5.32 -321.23 -1.71 -22.85 16 10 C 0.28 11.81 8.11 133.31 1.08 12.89 16 11 C -0.29 -11.76 9.61 22.11 0.21 -11.55 16 12 C 0.06 2.36 11.44 83.52 0.96 3.32 16 13 N -0.35 -15.88 3.67 -351.84 -1.29 -17.17 16 14 C 0.24 11.26 5.33 85.63 0.46 11.71 16 15 C -0.55 -31.98 9.79 25.60 0.25 -31.73 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.79 5.47 84.65 0.46 1.25 16 18 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 19 Si 0.96 40.95 27.47 68.60 1.88 42.84 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 23 N -0.35 -16.74 12.42 -54.43 -0.68 -17.42 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.93 6.36 -2.39 -0.02 0.91 16 26 H 0.10 0.85 8.07 -2.39 -0.02 0.83 16 27 H 0.11 1.14 7.81 -2.39 -0.02 1.12 16 28 H 0.07 1.53 7.42 -2.39 -0.02 1.51 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.12 0.88 8.03 -2.39 -0.02 0.86 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 11.54 6.56 -92.71 -0.61 10.93 16 35 H 0.17 6.52 5.91 -2.91 -0.02 6.51 16 36 H 0.21 5.90 8.06 -2.91 -0.02 5.88 16 37 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 38 H 0.08 3.29 7.50 -2.39 -0.02 3.28 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.23 329.81 3.62 -75.61 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.40 Total: 27.34 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 7.25 Total: 7.71 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.86 Total: -131.12 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.88 Total: 42.84 kcal Total: -79.23 3.62 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173342496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.384 kcal (2) G-P(sol) polarization free energy of solvation -79.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds