Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00290 * 2 1 4 4 C 1.38398 * 120.00367 * 179.97438 * 2 1 3 5 5 C 1.39896 * 119.99524 * 4.99946 * 4 2 1 6 6 N 1.31447 * 120.01719 * 179.97438 * 5 4 2 7 7 C 1.33285 * 120.01055 * 0.03268 * 6 5 4 8 8 C 1.47814 * 120.00540 * 180.02562 * 7 6 5 9 9 O 1.21563 * 120.00070 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99938 * 359.72194 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27951 * 10 8 7 12 12 C 1.52997 * 109.47551 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00327 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47216 * 89.99974 * 18 16 14 20 20 H 1.48501 * 109.47673 * 210.00204 * 18 16 14 21 21 H 1.48500 * 109.46888 * 330.00581 * 18 16 14 22 22 C 1.39411 * 119.99213 * 0.26573 * 7 6 5 23 23 N 1.32048 * 119.98531 * 359.44086 * 22 7 6 24 24 H 1.08995 * 109.47421 * 270.00546 * 1 2 3 25 25 H 1.09005 * 109.46681 * 30.00405 * 1 2 3 26 26 H 1.09007 * 109.47055 * 149.99776 * 1 2 3 27 27 H 1.09001 * 109.47285 * 239.99545 * 3 2 1 28 28 H 1.09004 * 109.46701 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47542 * 119.99368 * 3 2 1 30 30 H 1.08001 * 119.99069 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99736 * 0.27223 * 10 8 7 32 32 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 33 33 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 34 34 H 1.09007 * 109.46479 * 299.99856 * 12 11 10 35 35 H 1.08997 * 109.46852 * 59.99432 * 12 11 10 36 36 H 1.08992 * 109.46818 * 299.99508 * 13 12 11 37 37 H 1.08997 * 109.47123 * 59.99715 * 13 12 11 38 38 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.01022 * 179.72403 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4615 -2.4078 -0.1045 6 7 2.1184 -3.5463 -0.1046 7 6 3.4475 -3.5492 -0.0039 8 6 4.1861 -4.8295 -0.0045 9 8 5.3983 -4.8320 0.0869 10 7 3.5152 -5.9944 -0.1012 11 6 4.2468 -7.2637 -0.0957 12 6 3.2565 -8.4238 -0.2159 13 6 4.0206 -9.7493 -0.2107 14 6 3.0451 -10.8919 -0.3284 15 1 1.9861 -10.6925 -0.3994 16 6 3.5046 -12.1916 -0.3456 17 7 4.7943 -12.4344 -0.2587 18 14 2.2956 -13.6080 -0.4922 19 1 2.0796 -13.9280 -1.9262 20 1 2.8427 -14.8001 0.2040 21 1 1.0032 -13.2217 0.1288 22 6 4.1405 -2.3446 0.1071 23 7 3.4808 -1.2007 0.1013 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8243 1.3264 -0.8899 28 1 1.4892 2.0972 -0.0005 29 1 2.8241 1.3265 0.8900 30 1 0.3846 -2.4058 -0.1864 31 1 2.5480 -5.9924 -0.1744 32 1 4.9390 -7.2877 -0.9374 33 1 4.8046 -7.3575 0.8361 34 1 2.5647 -8.3994 0.6262 35 1 2.6985 -8.3300 -1.1475 36 1 4.7121 -9.7732 -1.0529 37 1 4.5790 -9.8431 0.7207 38 1 5.1177 -13.3488 -0.2711 39 1 5.2170 -2.3468 0.1932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355148620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 12.051461 kcal Electronic energy + Delta-G solvation = -20258.825294 eV Core-core repulsion = 17008.596383 eV Total energy + Delta-G solvation = -3250.228911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42594 -39.20565 -37.32118 -35.39838 -34.41400 -33.20526 -31.49738 -30.78231 -28.94582 -27.23938 -26.11281 -24.44539 -23.49803 -22.45285 -20.69969 -20.27456 -18.18526 -17.99934 -17.39838 -16.29979 -16.11083 -15.56072 -15.31872 -15.22415 -14.85461 -14.43889 -14.40396 -14.24145 -13.52630 -13.31388 -13.12030 -12.94183 -12.46458 -12.24950 -11.80077 -11.77216 -11.74182 -11.51307 -10.87542 -10.69052 -10.57306 -10.41529 -10.20183 -9.81270 -9.51439 -9.22969 -9.06319 -8.73910 -8.33707 -8.13159 -5.98383 -4.01178 0.44431 0.90444 2.26888 2.82046 3.33391 3.34469 3.39716 3.43089 3.74628 3.93988 3.98121 4.10559 4.47424 4.51871 4.70116 4.75732 4.86218 4.98836 5.08949 5.12583 5.30338 5.35423 5.37327 5.75356 5.83802 5.86910 6.18395 6.22439 6.53822 6.60345 6.66031 6.89061 7.05149 7.09722 7.50174 7.67853 7.80872 7.82490 8.00818 8.38599 8.43366 9.05551 9.62756 11.12949 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.002559 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.868067 B =10937.910228 C =11644.346681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.099 3.901 4 C 0.368 3.632 5 C -0.006 4.006 6 N -0.374 5.374 7 C -0.043 4.043 8 C 0.575 3.425 9 O -0.542 6.542 10 N -0.706 5.706 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.169 3.831 23 N -0.507 5.507 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.171 0.829 31 H 0.407 0.593 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 28.486 0.406 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.314 5.314 3 C -0.044 4.044 4 C 0.128 3.872 5 C -0.179 4.179 6 N -0.090 5.090 7 C -0.184 4.184 8 C 0.359 3.641 9 O -0.420 6.420 10 N -0.356 5.356 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.008 3.992 23 N -0.230 5.230 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.188 0.812 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.461 28.448 0.477 29.684 hybrid contribution -1.140 -0.761 -0.120 1.376 sum -9.602 27.688 0.358 29.307 Atomic orbital electron populations 1.21908 0.77524 1.03746 1.02336 1.46205 1.05679 1.03074 1.76400 1.21650 0.96708 0.83368 1.02654 1.19617 0.89892 0.87519 0.90184 1.23203 1.01364 0.86609 1.06674 1.68138 1.07855 1.28797 1.04202 1.21814 0.90562 0.95905 1.10085 1.17511 0.86518 0.82798 0.77226 1.90792 1.12989 1.87120 1.51094 1.46046 1.11519 1.05792 1.72211 1.21716 0.95633 0.81243 1.02146 1.21892 0.97846 0.95190 1.00968 1.19034 0.95482 0.89212 0.97673 1.21212 0.93351 0.91029 1.50338 0.92626 1.25031 0.95132 0.99011 0.95353 1.69964 1.12694 1.20157 1.50521 0.86580 0.81286 0.81927 0.78108 1.20682 1.21240 1.19901 1.23524 1.01693 0.85897 0.88132 1.68145 1.06231 1.29576 1.18999 0.92125 0.90305 0.90509 0.92081 0.90725 0.91851 0.81198 0.75742 0.91519 0.91521 0.92643 0.92650 0.96237 0.96233 0.92958 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 10.25 59.85 0.61 0.90 16 2 N -0.60 -4.11 3.37 -189.50 -0.64 -4.75 16 3 C 0.10 0.54 10.19 59.85 0.61 1.15 16 4 C 0.37 3.64 7.37 -155.01 -1.14 2.50 16 5 C -0.01 -0.06 10.42 -17.10 -0.18 -0.24 16 6 N -0.37 -4.69 9.69 -9.44 -0.09 -4.78 16 7 C -0.04 -0.60 6.74 -82.88 -0.56 -1.15 16 8 C 0.58 9.48 7.80 -12.34 -0.10 9.38 16 9 O -0.54 -10.35 16.33 5.31 0.09 -10.27 16 10 N -0.71 -11.42 5.55 -61.26 -0.34 -11.76 16 11 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 12 C -0.12 -2.45 5.27 -26.73 -0.14 -2.60 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.17 2.11 10.76 -17.02 -0.18 1.93 16 23 N -0.51 -5.88 9.71 -11.96 -0.12 -5.99 16 24 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.08 0.12 7.92 -51.93 -0.41 -0.29 16 26 H 0.08 0.20 5.98 -51.93 -0.31 -0.11 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.20 7.79 -51.93 -0.40 -0.20 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.17 1.09 6.02 -52.49 -0.32 0.77 16 31 H 0.41 5.92 7.81 -40.82 -0.32 5.60 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.18 2.08 7.63 -52.49 -0.40 1.68 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -34.12 335.30 -7.49 -41.61 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.51 Total: -0.36 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.65 Total: 0.89 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.45 Total: -53.64 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.12 -7.49 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355148620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.664 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds