Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00290 * 2 1 4 4 C 1.38398 * 120.00367 * 179.97438 * 2 1 3 5 5 C 1.39896 * 119.99524 * 4.99946 * 4 2 1 6 6 N 1.31447 * 120.01719 * 179.97438 * 5 4 2 7 7 C 1.33285 * 120.01055 * 0.03268 * 6 5 4 8 8 C 1.47814 * 120.00540 * 180.02562 * 7 6 5 9 9 O 1.21563 * 120.00070 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99938 * 359.72194 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27951 * 10 8 7 12 12 C 1.52997 * 109.47551 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00027 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00263 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00327 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47216 * 89.99974 * 18 16 14 20 20 H 1.48501 * 109.47673 * 210.00204 * 18 16 14 21 21 H 1.48500 * 109.46888 * 330.00581 * 18 16 14 22 22 C 1.39411 * 119.99213 * 0.26573 * 7 6 5 23 23 N 1.32048 * 119.98531 * 359.44086 * 22 7 6 24 24 H 1.08995 * 109.47421 * 270.00546 * 1 2 3 25 25 H 1.09005 * 109.46681 * 30.00405 * 1 2 3 26 26 H 1.09007 * 109.47055 * 149.99776 * 1 2 3 27 27 H 1.09001 * 109.47285 * 239.99545 * 3 2 1 28 28 H 1.09004 * 109.46701 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47542 * 119.99368 * 3 2 1 30 30 H 1.08001 * 119.99069 * 0.02562 * 5 4 2 31 31 H 0.97000 * 119.99736 * 0.27223 * 10 8 7 32 32 H 1.08998 * 109.46795 * 299.99885 * 11 10 8 33 33 H 1.09002 * 109.47196 * 59.99076 * 11 10 8 34 34 H 1.09007 * 109.46479 * 299.99856 * 12 11 10 35 35 H 1.08997 * 109.46852 * 59.99432 * 12 11 10 36 36 H 1.08992 * 109.46818 * 299.99508 * 13 12 11 37 37 H 1.08997 * 109.47123 * 59.99715 * 13 12 11 38 38 H 0.96994 * 120.00789 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.01022 * 179.72403 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0005 5 6 1.4615 -2.4078 -0.1045 6 7 2.1184 -3.5463 -0.1046 7 6 3.4475 -3.5492 -0.0039 8 6 4.1861 -4.8295 -0.0045 9 8 5.3983 -4.8320 0.0869 10 7 3.5152 -5.9944 -0.1012 11 6 4.2468 -7.2637 -0.0957 12 6 3.2565 -8.4238 -0.2159 13 6 4.0206 -9.7493 -0.2107 14 6 3.0451 -10.8919 -0.3284 15 1 1.9861 -10.6925 -0.3994 16 6 3.5046 -12.1916 -0.3456 17 7 4.7943 -12.4344 -0.2587 18 14 2.2956 -13.6080 -0.4922 19 1 2.0796 -13.9280 -1.9262 20 1 2.8427 -14.8001 0.2040 21 1 1.0032 -13.2217 0.1288 22 6 4.1405 -2.3446 0.1071 23 7 3.4808 -1.2007 0.1013 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8243 1.3264 -0.8899 28 1 1.4892 2.0972 -0.0005 29 1 2.8241 1.3265 0.8900 30 1 0.3846 -2.4058 -0.1864 31 1 2.5480 -5.9924 -0.1744 32 1 4.9390 -7.2877 -0.9374 33 1 4.8046 -7.3575 0.8361 34 1 2.5647 -8.3994 0.6262 35 1 2.6985 -8.3300 -1.1475 36 1 4.7121 -9.7732 -1.0529 37 1 4.5790 -9.8431 0.7207 38 1 5.1177 -13.3488 -0.2711 39 1 5.2170 -2.3468 0.1932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355148620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = -12.233805 kcal Electronic energy + Delta-G solvation = -20259.878382 eV Core-core repulsion = 17008.596383 eV Total energy + Delta-G solvation = -3251.281999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28915 -40.44243 -37.98838 -36.98713 -35.43492 -34.98392 -33.06821 -31.90965 -29.34980 -28.80244 -27.20107 -25.35014 -24.96677 -23.48725 -22.29545 -21.65043 -19.22565 -18.84561 -18.47619 -18.15332 -16.94375 -16.84089 -16.51255 -16.41297 -16.11936 -15.56532 -15.42513 -15.36676 -14.69124 -14.43887 -14.18617 -13.74988 -13.50433 -13.46861 -13.32118 -12.85314 -12.74430 -12.59298 -12.52486 -12.42676 -12.37266 -11.68593 -11.67261 -11.31592 -11.16533 -11.13621 -10.54071 -10.19921 -10.13731 -8.81251 -8.18133 -6.29559 -0.46710 0.06883 1.42404 1.44083 1.55105 1.69127 1.69868 2.11960 2.43663 2.77816 3.05079 3.15354 3.21734 3.35777 3.86628 4.00663 4.17157 4.21872 4.22726 4.36551 4.51521 4.56156 4.57548 4.75510 4.90565 4.93396 4.94806 4.97524 5.06836 5.17346 5.40337 5.53282 5.64099 5.71967 5.85351 5.93611 6.22991 6.26823 6.50571 6.76860 6.87518 7.13555 7.39715 8.94007 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037632 B = 0.002559 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.868067 B =10937.910228 C =11644.346681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.093 3.907 4 C 0.368 3.632 5 C 0.004 3.996 6 N -0.387 5.387 7 C -0.073 4.073 8 C 0.576 3.424 9 O -0.578 6.578 10 N -0.700 5.700 11 C 0.128 3.872 12 C -0.102 4.102 13 C 0.024 3.976 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.261 1.261 22 C 0.172 3.828 23 N -0.524 5.524 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.208 0.792 31 H 0.417 0.583 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.066 0.934 36 H -0.006 1.006 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.778 30.222 0.208 32.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.300 5.300 3 C -0.049 4.049 4 C 0.125 3.875 5 C -0.171 4.171 6 N -0.102 5.102 7 C -0.212 4.212 8 C 0.362 3.638 9 O -0.458 6.458 10 N -0.351 5.351 11 C 0.005 3.995 12 C -0.140 4.140 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.185 1.185 22 C 0.010 3.990 23 N -0.248 5.248 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.224 0.776 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.869 30.225 0.278 32.473 hybrid contribution -0.211 -1.052 -0.055 1.075 sum -12.080 29.172 0.224 31.575 Atomic orbital electron populations 1.22267 0.75022 1.05574 1.03656 1.46658 1.07263 1.02438 1.73670 1.21806 0.97552 0.83708 1.01830 1.19976 0.89583 0.88969 0.88985 1.23804 1.02794 0.85688 1.04823 1.68069 1.07187 1.30217 1.04752 1.21285 0.91282 0.94553 1.14033 1.17891 0.86253 0.83593 0.76020 1.90759 1.14594 1.87748 1.52718 1.45836 1.11831 1.04944 1.72448 1.21341 0.95049 0.81981 1.01147 1.21600 0.97528 0.92853 1.01985 1.18941 0.95163 0.92021 0.95226 1.21674 0.94166 0.91988 1.50046 0.91626 1.26033 0.97062 1.02248 0.94845 1.70110 1.14915 1.20940 1.51544 0.85398 0.78991 0.77911 0.78435 1.19789 1.20980 1.18476 1.23474 1.01803 0.85917 0.87770 1.68191 1.07310 1.28868 1.20414 0.90939 0.87839 0.89449 0.92811 0.87322 0.92801 0.77564 0.74601 0.92635 0.92639 0.91527 0.91516 0.98771 0.98768 0.92804 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 10.25 127.77 1.31 1.48 16 2 N -0.59 -6.16 3.37 -753.47 -2.54 -8.70 16 3 C 0.09 0.76 10.19 127.77 1.30 2.06 16 4 C 0.37 6.50 7.37 133.35 0.98 7.48 16 5 C 0.00 0.07 10.42 85.15 0.89 0.96 16 6 N -0.39 -9.23 9.69 -183.79 -1.78 -11.02 16 7 C -0.07 -2.04 6.74 41.74 0.28 -1.76 16 8 C 0.58 19.54 7.80 86.78 0.68 20.21 16 9 O -0.58 -23.11 16.33 -3.91 -0.06 -23.17 16 10 N -0.70 -22.90 5.55 -466.00 -2.58 -25.48 16 11 C 0.13 4.87 5.67 86.38 0.49 5.36 16 12 C -0.10 -4.15 5.27 30.59 0.16 -3.99 16 13 C 0.02 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.93 -57.81 13.29 21.44 0.28 -57.53 16 18 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.17 4.35 10.76 84.94 0.91 5.26 16 23 N -0.52 -11.78 9.71 -191.74 -1.86 -13.64 16 24 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.10 -0.20 7.92 -2.38 -0.02 -0.22 16 26 H 0.09 0.05 5.98 -2.38 -0.01 0.04 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.16 7.79 -2.38 -0.02 0.14 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.21 1.80 6.02 -2.91 -0.02 1.78 16 31 H 0.42 11.90 7.81 -92.71 -0.72 11.18 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.18 4.39 7.63 -2.91 -0.02 4.37 16 Total: -1.00 -75.49 335.30 1.66 -73.83 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.34 Total: 11.11 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 7.85 Total: 8.15 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -8.48 Total: -116.37 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -75.49 1.66 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355148620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.594 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds