Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99991 * 2 1 4 4 C 1.39715 * 111.00059 * 123.95685 * 2 1 3 5 5 C 1.39312 * 120.48695 * 299.99500 * 4 2 1 6 6 C 1.38497 * 118.35565 * 179.74757 * 5 4 2 7 7 C 1.38279 * 119.23901 * 0.25810 * 6 5 4 8 8 N 1.31851 * 120.92894 * 0.02562 * 7 6 5 9 9 C 1.31810 * 121.80007 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.67232 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46905 * 90.00027 * 10 9 8 12 12 C 1.34780 * 119.99521 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00379 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99580 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00168 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47440 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99934 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00119 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99990 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47260 * 89.99856 * 20 18 16 22 22 H 1.48497 * 109.47280 * 210.00321 * 20 18 16 23 23 H 1.48505 * 109.47077 * 329.99998 * 20 18 16 24 24 H 1.09002 * 109.47235 * 296.04336 * 1 2 3 25 25 H 1.08997 * 109.47213 * 56.04863 * 1 2 3 26 26 H 1.09003 * 109.46608 * 176.04805 * 1 2 3 27 27 H 1.09003 * 109.47406 * 183.95249 * 3 2 1 28 28 H 1.08992 * 109.47566 * 303.95297 * 3 2 1 29 29 H 1.08998 * 109.47067 * 63.95461 * 3 2 1 30 30 H 1.08002 * 120.82642 * 0.03145 * 5 4 2 31 31 H 1.07994 * 120.38147 * 180.27682 * 6 5 4 32 32 H 1.08005 * 119.53063 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47269 * 210.00360 * 10 9 8 34 34 H 1.09004 * 109.46758 * 330.00067 * 10 9 8 35 35 H 0.96995 * 120.00267 * 0.02562 * 11 10 9 36 36 H 0.97003 * 120.00586 * 359.97438 * 14 12 11 37 37 H 1.08999 * 109.46945 * 300.00380 * 15 14 12 38 38 H 1.09002 * 109.46693 * 59.99660 * 15 14 12 39 39 H 0.96997 * 120.00085 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9697 -0.7286 1.0819 5 6 1.6627 -0.3549 2.3884 6 6 2.1784 -1.1116 3.4274 7 6 2.9789 -2.2010 3.1370 8 7 3.2555 -2.5253 1.8893 9 6 2.7856 -1.8325 0.8711 10 6 3.1328 -2.2457 -0.5361 11 7 2.1286 -3.1916 -1.0291 12 6 2.2351 -3.7000 -2.2728 13 8 3.1648 -3.3740 -2.9853 14 7 1.3110 -4.5698 -2.7265 15 6 1.4263 -5.1221 -4.0786 16 6 0.2767 -6.0614 -4.3373 17 1 -0.4659 -6.2299 -3.5713 18 6 0.1729 -6.7058 -5.5517 19 7 -0.8307 -7.5253 -5.7777 20 14 1.4576 -6.4150 -6.8762 21 1 2.5555 -7.4036 -6.7265 22 1 0.8324 -6.5683 -8.2144 23 1 2.0062 -5.0417 -6.7406 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8723 0.9233 30 1 1.0343 0.5010 2.5860 31 1 1.9576 -0.8539 4.4527 32 1 3.3839 -2.7942 3.9436 33 1 3.1501 -1.3659 -1.1792 34 1 4.1140 -2.7206 -0.5436 35 1 1.3871 -3.4519 -0.4605 36 1 0.5694 -4.8302 -2.1580 37 1 1.4035 -4.3104 -4.8057 38 1 2.3668 -5.6654 -4.1700 39 1 -0.9036 -7.9789 -6.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359043698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 22.319775 kcal Electronic energy + Delta-G solvation = -21196.336170 eV Core-core repulsion = 17946.552527 eV Total energy + Delta-G solvation = -3249.783643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97602 -39.05962 -37.48982 -34.89721 -33.98778 -32.43481 -32.08577 -30.81602 -28.03522 -27.91997 -26.15979 -25.31995 -22.55708 -21.87551 -21.60953 -20.17639 -18.28769 -17.36996 -17.01264 -16.48373 -16.12971 -15.66849 -15.30086 -14.79760 -14.38385 -14.33760 -14.18898 -13.85799 -13.54004 -13.21930 -13.03109 -12.77535 -12.67505 -12.52055 -12.27461 -12.01944 -11.96844 -11.83616 -10.90712 -10.68559 -10.14547 -9.89134 -9.88089 -9.56686 -9.38240 -9.11678 -8.82725 -8.71478 -8.62656 -7.87779 -6.14081 -4.15275 0.67903 0.87346 3.19700 3.34075 3.40388 3.44041 3.50303 3.71911 3.96736 4.09625 4.40547 4.41288 4.48696 4.66064 4.82568 4.93552 5.06764 5.10709 5.14672 5.19900 5.21835 5.30249 5.53277 5.58802 5.62773 5.74868 5.94279 6.02406 6.19677 6.48588 6.83867 6.88488 6.88935 7.22005 7.35526 7.52374 7.68508 7.73241 8.36974 8.79015 8.92009 9.34292 9.49336 10.98000 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.003566 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.732620 B = 7849.830073 C = 8077.859791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.501 5.501 3 C 0.027 3.973 4 C 0.057 3.943 5 C -0.109 4.109 6 C -0.160 4.160 7 C 0.096 3.904 8 N -0.461 5.461 9 C 0.135 3.865 10 C 0.203 3.797 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.604 6.604 14 N -0.724 5.724 15 C 0.239 3.761 16 C -0.540 4.540 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.259 1.259 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.390 0.610 36 H 0.391 0.609 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 17.650 19.657 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.222 5.222 3 C -0.119 4.119 4 C -0.040 4.040 5 C -0.137 4.137 6 C -0.181 4.181 7 C -0.062 4.062 8 N -0.170 5.170 9 C -0.004 4.004 10 C 0.078 3.922 11 N -0.399 5.399 12 C 0.399 3.601 13 O -0.483 6.483 14 N -0.376 5.376 15 C 0.116 3.884 16 C -0.578 4.578 17 H 0.096 0.904 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.176 0.824 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.222 0.778 36 H 0.224 0.776 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.866 16.874 18.168 25.268 hybrid contribution -1.061 0.970 0.920 1.707 sum 3.805 17.844 19.089 26.406 Atomic orbital electron populations 1.22471 0.85162 1.03243 1.00867 1.59560 1.08866 1.14116 1.39662 1.22485 1.01276 0.87203 1.00958 1.19708 0.98348 0.96505 0.89468 1.22114 0.98871 0.99618 0.93130 1.22100 0.99068 0.96788 1.00137 1.22833 0.94797 0.94741 0.93809 1.67622 1.21021 1.28853 0.99486 1.21371 0.92981 0.90684 0.95346 1.19688 0.91910 0.93546 0.87061 1.44861 1.30052 1.49660 1.15330 1.16008 0.83255 0.79733 0.81070 1.90856 1.34971 1.65333 1.57152 1.45353 1.27248 1.46368 1.18619 1.19338 0.97303 0.93571 0.78166 1.21114 1.09434 1.25579 1.01669 0.90364 1.24782 0.95566 0.94232 0.98093 1.69887 1.30396 1.28498 1.24510 0.86808 0.81803 0.80060 0.80984 1.19873 1.21030 1.18355 0.95296 0.90327 0.90797 0.90960 0.90347 0.95285 0.85084 0.84725 0.82391 0.89242 0.90737 0.77760 0.77609 0.95920 0.96403 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.35 60.06 0.56 0.81 16 2 N -0.50 -4.99 3.95 -186.73 -0.74 -5.73 16 3 C 0.03 0.22 9.39 60.06 0.56 0.78 16 4 C 0.06 0.58 4.71 -83.63 -0.39 0.19 16 5 C -0.11 -0.89 8.70 -39.09 -0.34 -1.23 16 6 C -0.16 -1.18 10.10 -39.47 -0.40 -1.58 16 7 C 0.10 0.86 11.18 -17.53 -0.20 0.66 16 8 N -0.46 -5.61 10.27 -9.31 -0.10 -5.70 16 9 C 0.14 1.66 6.17 -82.36 -0.51 1.15 16 10 C 0.20 2.98 5.72 -5.19 -0.03 2.95 16 11 N -0.74 -11.92 5.55 -66.41 -0.37 -12.29 16 12 C 0.70 14.62 8.57 -86.92 -0.74 13.88 16 13 O -0.60 -14.94 16.34 5.29 0.09 -14.86 16 14 N -0.72 -15.64 5.55 -66.41 -0.37 -16.01 16 15 C 0.24 6.14 4.50 -5.19 -0.02 6.12 16 16 C -0.54 -15.21 9.83 -34.44 -0.34 -15.55 16 17 H 0.08 2.29 7.84 -52.48 -0.41 1.88 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 24 H 0.03 0.20 7.19 -51.93 -0.37 -0.17 16 25 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.03 0.19 7.41 -51.93 -0.38 -0.20 16 30 H 0.13 0.83 7.17 -52.49 -0.38 0.45 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.09 1.37 7.46 -51.93 -0.39 0.98 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.39 5.45 8.48 -40.82 -0.35 5.10 16 36 H 0.39 7.49 8.34 -40.82 -0.34 7.15 16 37 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -34.42 331.27 -7.84 -42.26 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.51 Total: 6.00 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.95 Total: 10.30 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.80 Total: -65.99 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.42 -7.84 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359043698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.578 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds