Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99991 * 2 1 4 4 C 1.39715 * 111.00059 * 123.95685 * 2 1 3 5 5 C 1.39312 * 120.48695 * 299.99500 * 4 2 1 6 6 C 1.38497 * 118.35565 * 179.74757 * 5 4 2 7 7 C 1.38279 * 119.23901 * 0.25810 * 6 5 4 8 8 N 1.31851 * 120.92894 * 0.02562 * 7 6 5 9 9 C 1.31810 * 121.80007 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.67232 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46905 * 90.00027 * 10 9 8 12 12 C 1.34780 * 119.99521 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00379 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99580 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00168 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47440 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99934 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00119 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99990 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47260 * 89.99856 * 20 18 16 22 22 H 1.48497 * 109.47280 * 210.00321 * 20 18 16 23 23 H 1.48505 * 109.47077 * 329.99998 * 20 18 16 24 24 H 1.09002 * 109.47235 * 296.04336 * 1 2 3 25 25 H 1.08997 * 109.47213 * 56.04863 * 1 2 3 26 26 H 1.09003 * 109.46608 * 176.04805 * 1 2 3 27 27 H 1.09003 * 109.47406 * 183.95249 * 3 2 1 28 28 H 1.08992 * 109.47566 * 303.95297 * 3 2 1 29 29 H 1.08998 * 109.47067 * 63.95461 * 3 2 1 30 30 H 1.08002 * 120.82642 * 0.03145 * 5 4 2 31 31 H 1.07994 * 120.38147 * 180.27682 * 6 5 4 32 32 H 1.08005 * 119.53063 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47269 * 210.00360 * 10 9 8 34 34 H 1.09004 * 109.46758 * 330.00067 * 10 9 8 35 35 H 0.96995 * 120.00267 * 0.02562 * 11 10 9 36 36 H 0.97003 * 120.00586 * 359.97438 * 14 12 11 37 37 H 1.08999 * 109.46945 * 300.00380 * 15 14 12 38 38 H 1.09002 * 109.46693 * 59.99660 * 15 14 12 39 39 H 0.96997 * 120.00085 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9697 -0.7286 1.0819 5 6 1.6627 -0.3549 2.3884 6 6 2.1784 -1.1116 3.4274 7 6 2.9789 -2.2010 3.1370 8 7 3.2555 -2.5253 1.8893 9 6 2.7856 -1.8325 0.8711 10 6 3.1328 -2.2457 -0.5361 11 7 2.1286 -3.1916 -1.0291 12 6 2.2351 -3.7000 -2.2728 13 8 3.1648 -3.3740 -2.9853 14 7 1.3110 -4.5698 -2.7265 15 6 1.4263 -5.1221 -4.0786 16 6 0.2767 -6.0614 -4.3373 17 1 -0.4659 -6.2299 -3.5713 18 6 0.1729 -6.7058 -5.5517 19 7 -0.8307 -7.5253 -5.7777 20 14 1.4576 -6.4150 -6.8762 21 1 2.5555 -7.4036 -6.7265 22 1 0.8324 -6.5683 -8.2144 23 1 2.0062 -5.0417 -6.7406 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8723 0.9233 30 1 1.0343 0.5010 2.5860 31 1 1.9576 -0.8539 4.4527 32 1 3.3839 -2.7942 3.9436 33 1 3.1501 -1.3659 -1.1792 34 1 4.1140 -2.7206 -0.5436 35 1 1.3871 -3.4519 -0.4605 36 1 0.5694 -4.8302 -2.1580 37 1 1.4035 -4.3104 -4.8057 38 1 2.3668 -5.6654 -4.1700 39 1 -0.9036 -7.9789 -6.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359043698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -4.591818 kcal Electronic energy + Delta-G solvation = -21197.503145 eV Core-core repulsion = 17946.552527 eV Total energy + Delta-G solvation = -3250.950618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76175 -40.70945 -38.18540 -36.43040 -35.76512 -34.39190 -33.09763 -31.72521 -29.87447 -28.54741 -27.41761 -25.98243 -24.16350 -23.04479 -22.43757 -21.89618 -19.99937 -18.46462 -18.04552 -17.80415 -17.45744 -16.68392 -16.45140 -16.39968 -16.02209 -15.36289 -15.04392 -15.01174 -14.69932 -14.59059 -14.39762 -14.27644 -13.93896 -13.47655 -13.27758 -13.24934 -13.00468 -12.72831 -12.66941 -12.66162 -11.89750 -11.63147 -11.34252 -10.89214 -10.80294 -10.62601 -10.28276 -9.91953 -9.63607 -9.44797 -8.37494 -6.44066 -0.05417 0.19531 1.36019 1.37469 1.51715 1.90954 2.25596 2.31651 2.76128 2.77518 2.98189 3.23754 3.56287 3.70496 3.90811 4.03977 4.18162 4.35211 4.44697 4.49719 4.53101 4.58464 4.64650 4.77189 4.85689 4.96233 4.97166 5.08834 5.10629 5.17934 5.27484 5.47233 5.51100 5.58361 5.86198 5.97970 6.20138 6.29603 6.57480 6.98728 7.16094 7.27311 7.68971 8.77307 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.003566 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.732620 B = 7849.830073 C = 8077.859791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.524 5.524 3 C 0.029 3.971 4 C 0.056 3.944 5 C -0.108 4.108 6 C -0.142 4.142 7 C 0.086 3.914 8 N -0.492 5.492 9 C 0.111 3.889 10 C 0.209 3.791 11 N -0.720 5.720 12 C 0.700 3.300 13 O -0.643 6.643 14 N -0.722 5.722 15 C 0.252 3.748 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.027 3.973 19 N -0.932 5.932 20 Si 0.938 3.062 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.260 1.260 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.402 0.598 36 H 0.403 0.597 37 H 0.012 0.988 38 H 0.008 0.992 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 19.159 21.549 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.246 5.246 3 C -0.118 4.118 4 C -0.041 4.041 5 C -0.136 4.136 6 C -0.162 4.162 7 C -0.072 4.072 8 N -0.201 5.201 9 C -0.027 4.027 10 C 0.084 3.916 11 N -0.376 5.376 12 C 0.400 3.600 13 O -0.525 6.525 14 N -0.375 5.375 15 C 0.128 3.872 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.571 5.571 20 Si 0.761 3.239 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.184 1.184 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.174 0.826 31 H 0.190 0.810 32 H 0.200 0.800 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.238 0.762 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.802 18.400 20.116 27.682 hybrid contribution -1.090 0.541 0.501 1.316 sum 3.711 18.941 20.617 28.242 Atomic orbital electron populations 1.22460 0.84498 1.02591 1.02042 1.59500 1.09613 1.15246 1.40219 1.22496 1.00746 0.86379 1.02138 1.19711 0.97838 0.95864 0.90661 1.22385 0.98775 1.00274 0.92137 1.22495 0.96857 0.95117 1.01736 1.23332 0.95039 0.95699 0.93114 1.67504 1.22011 1.29900 1.00716 1.20934 0.95426 0.92425 0.93937 1.19593 0.90534 0.92291 0.89151 1.44686 1.30486 1.48792 1.13622 1.16085 0.82421 0.79426 0.82076 1.90824 1.36442 1.66589 1.58660 1.45082 1.28088 1.46712 1.17624 1.18950 0.95717 0.92575 0.79952 1.21270 1.09636 1.25971 1.01393 0.92363 1.25572 0.97448 0.93944 1.00327 1.69981 1.32065 1.29499 1.25520 0.85850 0.79442 0.79884 0.78685 1.19034 1.19657 1.18450 0.93307 0.90066 0.92225 0.91783 0.89847 0.93452 0.82643 0.81033 0.79971 0.90145 0.92583 0.76292 0.76204 0.97051 0.97379 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.35 127.69 1.19 1.67 16 2 N -0.52 -9.81 3.95 -744.68 -2.94 -12.75 16 3 C 0.03 0.40 9.39 127.69 1.20 1.60 16 4 C 0.06 1.07 4.71 38.30 0.18 1.25 16 5 C -0.11 -1.40 8.70 22.59 0.20 -1.21 16 6 C -0.14 -1.54 10.10 22.34 0.23 -1.31 16 7 C 0.09 1.32 11.18 84.70 0.95 2.27 16 8 N -0.49 -11.52 10.27 -183.35 -1.88 -13.40 16 9 C 0.11 2.67 6.17 42.72 0.26 2.94 16 10 C 0.21 6.29 5.72 85.63 0.49 6.78 16 11 N -0.72 -23.33 5.55 -482.29 -2.68 -26.01 16 12 C 0.70 29.62 8.57 179.05 1.53 31.16 16 13 O -0.64 -32.40 16.34 -3.97 -0.06 -32.47 16 14 N -0.72 -31.46 5.55 -482.30 -2.68 -34.14 16 15 C 0.25 13.07 4.50 85.63 0.38 13.45 16 16 C -0.54 -31.06 9.83 25.60 0.25 -30.81 16 17 H 0.06 3.48 7.84 -2.91 -0.02 3.45 16 18 C 0.03 1.58 5.47 84.65 0.46 2.04 16 19 N -0.93 -56.57 13.96 21.45 0.30 -56.27 16 20 Si 0.94 45.25 27.47 68.60 1.88 47.14 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 24 H 0.05 0.55 7.19 -2.39 -0.02 0.53 16 25 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.05 0.49 7.41 -2.39 -0.02 0.47 16 30 H 0.16 1.26 7.17 -2.91 -0.02 1.24 16 31 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 32 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.08 2.55 7.46 -2.39 -0.02 2.53 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.40 11.16 8.48 -92.71 -0.79 10.37 16 36 H 0.40 15.51 8.34 -92.71 -0.77 14.73 16 37 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 38 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.76 331.27 -1.27 -76.03 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.54 Total: 22.04 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 7.33 Total: 29.84 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -9.88 Total: -142.58 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.06 Total: -32.47 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -74.76 -1.27 -76.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359043698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.439 kcal (2) G-P(sol) polarization free energy of solvation -74.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds