Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38411 * 120.00229 * 180.02562 * 2 1 3 5 5 N 1.32506 * 119.21305 * 359.97438 * 4 2 1 6 6 C 1.32260 * 120.73943 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19657 * 359.97438 * 6 5 4 8 8 C 1.38590 * 118.55706 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.40022 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47430 * 94.99765 * 9 8 7 11 11 C 1.34772 * 120.00582 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99767 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00702 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47702 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47210 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00045 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99760 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99766 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00215 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.46816 * 89.99792 * 19 17 15 21 21 H 1.48492 * 109.47237 * 209.99550 * 19 17 15 22 22 H 1.48497 * 109.47059 * 330.00056 * 19 17 15 23 23 N 1.32293 * 119.19803 * 359.72848 * 8 7 6 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.07999 * 120.40468 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.72419 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47163 * 214.99882 * 9 8 7 33 33 H 1.09001 * 109.47484 * 334.99557 * 9 8 7 34 34 H 0.97001 * 119.99821 * 0.02562 * 10 9 8 35 35 H 1.09005 * 109.46771 * 300.00453 * 13 11 10 36 36 H 1.09001 * 109.47109 * 59.99659 * 13 11 10 37 37 H 1.09000 * 109.46710 * 300.00184 * 14 13 11 38 38 H 1.09004 * 109.46902 * 59.99451 * 14 13 11 39 39 H 0.97005 * 120.00031 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1986 -0.0005 5 7 1.4789 -2.3370 -0.0005 6 6 2.1095 -3.4996 -0.0005 7 6 3.4957 -3.5170 -0.0011 8 6 4.1734 -2.3082 -0.0011 9 6 5.6801 -2.2786 -0.0011 10 7 6.1660 -2.1488 -1.3770 11 6 7.4904 -2.1008 -1.6223 12 8 8.2799 -2.1657 -0.7040 13 6 7.9903 -1.9666 -3.0376 14 6 9.5200 -1.9368 -3.0377 15 6 10.0198 -1.8032 -4.4531 16 1 9.3167 -1.7450 -5.2707 17 6 11.3746 -1.7543 -4.7040 18 7 11.8108 -1.6383 -5.9392 19 14 12.5907 -1.8543 -3.2895 20 1 12.9406 -3.2754 -3.0371 21 1 13.8191 -1.0966 -3.6384 22 1 11.9790 -1.2708 -2.0687 23 7 3.4817 -1.1805 -0.0060 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 2.3792 1.5834 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 1.5513 -4.4242 -0.0001 31 1 4.0357 -4.4522 -0.0015 32 1 6.0269 -1.4298 0.5884 33 1 6.0617 -3.2027 0.4333 34 1 5.5345 -2.0965 -2.1114 35 1 7.6437 -2.8154 -3.6273 36 1 7.6084 -1.0426 -3.4717 37 1 9.8667 -1.0883 -2.4478 38 1 9.9014 -2.8611 -2.6036 39 1 12.7640 -1.6035 -6.1158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360729793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 22.043026 kcal Electronic energy + Delta-G solvation = -20568.017464 eV Core-core repulsion = 17318.221820 eV Total energy + Delta-G solvation = -3249.795644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30670 -39.24177 -37.15528 -35.25907 -33.47289 -33.42757 -31.68443 -31.16669 -28.73846 -27.65982 -26.07025 -25.61227 -23.23191 -21.87958 -21.16378 -19.75171 -17.98854 -17.74437 -17.07809 -16.16166 -15.97458 -15.79109 -15.52518 -15.23356 -14.79290 -14.46541 -14.09851 -14.04329 -13.42031 -13.18593 -12.95409 -12.90174 -12.59656 -12.52741 -12.29137 -12.13596 -11.40926 -11.21802 -10.99878 -10.94490 -10.54263 -10.15678 -10.03363 -9.77113 -9.40082 -9.22886 -9.15309 -8.94059 -8.49298 -8.20253 -6.01609 -4.00340 0.77560 0.94247 2.34832 3.10737 3.33136 3.39311 3.45889 3.57001 3.70419 3.86934 4.15452 4.35734 4.52389 4.80122 4.90294 4.95875 4.99503 5.07787 5.25504 5.32264 5.33930 5.38815 5.44202 5.55356 5.56966 5.69142 5.99782 6.09186 6.11072 6.46889 6.50910 6.61693 6.70198 7.11699 7.37788 7.45189 7.71176 7.80608 8.00046 8.50800 8.62818 9.01536 9.61419 11.11245 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.002959 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.900843 B = 9459.179143 C = 9765.676689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.594 5.594 3 C 0.101 3.899 4 C 0.561 3.439 5 N -0.568 5.568 6 C 0.193 3.807 7 C -0.275 4.275 8 C 0.207 3.793 9 C 0.170 3.830 10 N -0.734 5.734 11 C 0.514 3.486 12 O -0.538 6.538 13 C -0.121 4.121 14 C 0.002 3.998 15 C -0.525 4.525 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.261 1.261 23 N -0.554 5.554 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.169 0.831 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.020 0.980 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.081 0.037 13.400 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.311 5.311 3 C -0.042 4.042 4 C 0.206 3.794 5 N -0.291 5.291 6 C 0.025 3.975 7 C -0.301 4.301 8 C 0.058 3.942 9 C 0.046 3.954 10 N -0.389 5.389 11 C 0.302 3.698 12 O -0.414 6.414 13 C -0.161 4.161 14 C -0.036 4.036 15 C -0.563 4.563 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 N -0.277 5.277 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.233 0.767 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.936 1.090 13.971 28.604 hybrid contribution 0.704 -0.820 0.281 1.116 sum -24.232 0.270 14.252 28.114 Atomic orbital electron populations 1.21623 0.77523 1.03096 1.01730 1.45890 1.05810 1.02030 1.77368 1.21662 0.97781 0.82950 1.01806 1.19229 0.85084 0.86381 0.88728 1.67886 1.41048 0.97997 1.22179 1.22951 0.91668 0.95227 0.87664 1.22469 0.96502 1.00140 1.10983 1.21391 0.96195 0.87767 0.88878 1.20075 0.85495 1.03832 0.86046 1.46054 1.07935 1.77405 1.07467 1.21561 0.80704 0.74329 0.93184 1.90663 1.54971 1.48813 1.46949 1.21670 1.00995 1.03310 0.90093 1.19376 0.88873 0.97683 0.97709 1.21114 0.92753 1.50818 0.91583 0.90951 1.24976 0.98460 0.94347 0.95495 1.69914 1.14553 1.50796 1.19035 0.86789 0.80554 0.78584 0.83595 1.20236 1.21475 1.18480 1.67710 1.06764 1.31691 1.21554 0.92986 0.91318 0.90190 0.92963 0.89855 0.91240 0.81357 0.83504 0.89634 0.89447 0.76654 0.89550 0.89535 0.95770 0.96214 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 10.44 59.85 0.62 1.34 16 2 N -0.59 -5.76 3.37 -191.89 -0.65 -6.41 16 3 C 0.10 0.81 10.44 59.85 0.62 1.43 16 4 C 0.56 6.60 8.17 -322.80 -2.64 3.96 16 5 N -0.57 -6.16 9.11 -13.93 -0.13 -6.29 16 6 C 0.19 1.66 11.30 -17.22 -0.19 1.47 16 7 C -0.27 -2.48 9.83 -39.31 -0.39 -2.86 16 8 C 0.21 2.31 6.19 -82.27 -0.51 1.80 16 9 C 0.17 2.08 6.02 -5.20 -0.03 2.05 16 10 N -0.73 -10.03 5.55 -61.48 -0.34 -10.37 16 11 C 0.51 9.29 7.83 -10.99 -0.09 9.21 16 12 O -0.54 -11.77 15.98 5.55 0.09 -11.69 16 13 C -0.12 -2.34 5.64 -27.88 -0.16 -2.50 16 14 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 15 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 19 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 23 N -0.55 -6.85 9.05 -10.16 -0.09 -6.94 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 26 H 0.08 0.60 7.33 -51.93 -0.38 0.22 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 29 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.00 8.06 -51.93 -0.42 0.59 16 34 H 0.40 4.70 8.46 -40.82 -0.35 4.36 16 35 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 38 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -35.78 334.71 -8.92 -44.69 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.67 Total: -1.01 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -3.28 Total: 2.36 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.43 Total: -57.38 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.78 -8.92 -44.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.737 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds