Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38411 * 120.00229 * 180.02562 * 2 1 3 5 5 N 1.32506 * 119.21305 * 359.97438 * 4 2 1 6 6 C 1.32260 * 120.73943 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19657 * 359.97438 * 6 5 4 8 8 C 1.38590 * 118.55706 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.40022 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47430 * 94.99765 * 9 8 7 11 11 C 1.34772 * 120.00582 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99767 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00702 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47702 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47210 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00045 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99760 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99766 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00215 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.46816 * 89.99792 * 19 17 15 21 21 H 1.48492 * 109.47237 * 209.99550 * 19 17 15 22 22 H 1.48497 * 109.47059 * 330.00056 * 19 17 15 23 23 N 1.32293 * 119.19803 * 359.72848 * 8 7 6 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.07999 * 120.40468 * 179.97438 * 6 5 4 31 31 H 1.07994 * 120.72419 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.47163 * 214.99882 * 9 8 7 33 33 H 1.09001 * 109.47484 * 334.99557 * 9 8 7 34 34 H 0.97001 * 119.99821 * 0.02562 * 10 9 8 35 35 H 1.09005 * 109.46771 * 300.00453 * 13 11 10 36 36 H 1.09001 * 109.47109 * 59.99659 * 13 11 10 37 37 H 1.09000 * 109.46710 * 300.00184 * 14 13 11 38 38 H 1.09004 * 109.46902 * 59.99451 * 14 13 11 39 39 H 0.97005 * 120.00031 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1986 -0.0005 5 7 1.4789 -2.3370 -0.0005 6 6 2.1095 -3.4996 -0.0005 7 6 3.4957 -3.5170 -0.0011 8 6 4.1734 -2.3082 -0.0011 9 6 5.6801 -2.2786 -0.0011 10 7 6.1660 -2.1488 -1.3770 11 6 7.4904 -2.1008 -1.6223 12 8 8.2799 -2.1657 -0.7040 13 6 7.9903 -1.9666 -3.0376 14 6 9.5200 -1.9368 -3.0377 15 6 10.0198 -1.8032 -4.4531 16 1 9.3167 -1.7450 -5.2707 17 6 11.3746 -1.7543 -4.7040 18 7 11.8108 -1.6383 -5.9392 19 14 12.5907 -1.8543 -3.2895 20 1 12.9406 -3.2754 -3.0371 21 1 13.8191 -1.0966 -3.6384 22 1 11.9790 -1.2708 -2.0687 23 7 3.4817 -1.1805 -0.0060 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 2.3792 1.5834 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 1.5513 -4.4242 -0.0001 31 1 4.0357 -4.4522 -0.0015 32 1 6.0269 -1.4298 0.5884 33 1 6.0617 -3.2027 0.4333 34 1 5.5345 -2.0965 -2.1114 35 1 7.6437 -2.8154 -3.6273 36 1 7.6084 -1.0426 -3.4717 37 1 9.8667 -1.0883 -2.4478 38 1 9.9014 -2.8611 -2.6036 39 1 12.7640 -1.6035 -6.1158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360729793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = -1.723145 kcal Electronic energy + Delta-G solvation = -20569.048042 eV Core-core repulsion = 17318.221820 eV Total energy + Delta-G solvation = -3250.826223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.07569 -40.65172 -37.87935 -36.32162 -35.51485 -34.40340 -33.32468 -32.32739 -29.54523 -28.78879 -27.21417 -26.74015 -24.10113 -23.12926 -22.45911 -21.26116 -19.27136 -18.73501 -18.41586 -17.54869 -17.07276 -16.66866 -16.59021 -16.32020 -16.21103 -15.53799 -15.18044 -14.96277 -14.75816 -14.68400 -14.49434 -13.90817 -13.59512 -13.45247 -13.38303 -13.16213 -12.87355 -12.86156 -12.10943 -11.96213 -11.94720 -11.82924 -11.74544 -11.39185 -11.27039 -10.77348 -10.76911 -10.19255 -10.11114 -8.88752 -8.30370 -6.33429 -0.02278 0.23240 1.35064 1.36980 1.52244 1.66395 1.70033 2.21445 2.36550 2.89645 3.01291 3.05470 3.48157 3.62354 3.96236 4.13966 4.29163 4.35025 4.40438 4.41242 4.47847 4.50243 4.55024 4.64228 4.75981 4.81023 4.92441 4.93549 5.00432 5.27624 5.34012 5.40852 5.46376 5.62230 5.84897 5.88788 6.24365 6.39208 6.48471 6.73089 7.24165 7.24762 7.31999 8.85385 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.002959 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.900843 B = 9459.179143 C = 9765.676689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.600 5.600 3 C 0.102 3.898 4 C 0.541 3.459 5 N -0.579 5.579 6 C 0.194 3.806 7 C -0.267 4.267 8 C 0.191 3.809 9 C 0.175 3.825 10 N -0.713 5.713 11 C 0.521 3.479 12 O -0.580 6.580 13 C -0.116 4.116 14 C 0.005 3.995 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.945 5.945 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.260 1.260 23 N -0.578 5.578 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.207 0.793 31 H 0.171 0.829 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.682 -0.699 14.553 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.318 5.318 3 C -0.041 4.041 4 C 0.186 3.814 5 N -0.302 5.302 6 C 0.026 3.974 7 C -0.293 4.293 8 C 0.044 3.956 9 C 0.050 3.950 10 N -0.366 5.366 11 C 0.309 3.691 12 O -0.459 6.459 13 C -0.156 4.156 14 C -0.033 4.033 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.185 4.185 18 N -0.586 5.586 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.184 1.184 23 N -0.302 5.302 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.223 0.777 31 H 0.189 0.811 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.597 0.361 15.116 30.595 hybrid contribution 1.064 -0.592 -0.118 1.223 sum -25.533 -0.231 14.998 29.613 Atomic orbital electron populations 1.21738 0.76098 1.03905 1.02176 1.46210 1.06819 1.01877 1.76849 1.21693 0.97323 0.83070 1.02000 1.19556 0.85132 0.87380 0.89364 1.67979 1.41318 0.98433 1.22462 1.23627 0.91883 0.95842 0.86034 1.22712 0.96837 1.00117 1.09615 1.21278 0.95398 0.88598 0.90349 1.20087 0.86588 1.03761 0.84520 1.45767 1.06598 1.75338 1.08879 1.21135 0.81781 0.74213 0.91936 1.90652 1.56339 1.51185 1.47727 1.21491 0.97404 1.04884 0.91776 1.19229 0.92743 0.96548 0.94781 1.21435 0.92565 1.49848 0.92887 0.93298 1.25826 1.00570 0.94273 0.97868 1.70029 1.15243 1.52257 1.21023 0.85804 0.78399 0.79090 0.80287 1.19194 1.20496 1.18447 1.67649 1.07413 1.32519 1.22640 0.92642 0.89035 0.90859 0.92739 0.91848 0.88848 0.77659 0.81139 0.91123 0.88276 0.75267 0.87732 0.88293 0.97135 0.96920 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.44 127.77 1.33 2.59 16 2 N -0.60 -10.99 3.37 -761.01 -2.57 -13.56 16 3 C 0.10 1.55 10.44 127.77 1.33 2.88 16 4 C 0.54 12.16 8.17 261.49 2.14 14.30 16 5 N -0.58 -11.52 9.11 -197.98 -1.80 -13.32 16 6 C 0.19 2.80 11.30 84.72 0.96 3.76 16 7 C -0.27 -4.11 9.83 22.45 0.22 -3.89 16 8 C 0.19 4.00 6.19 42.57 0.26 4.27 16 9 C 0.17 4.06 6.02 85.63 0.52 4.57 16 10 N -0.71 -18.40 5.55 -466.80 -2.59 -20.99 16 11 C 0.52 18.28 7.83 87.66 0.69 18.97 16 12 O -0.58 -25.04 15.98 -3.05 -0.05 -25.09 16 13 C -0.12 -4.37 5.64 29.85 0.17 -4.20 16 14 C 0.00 0.25 3.33 29.85 0.10 0.35 16 15 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 16 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 17 C 0.01 0.73 5.47 84.65 0.46 1.19 16 18 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 19 Si 0.94 46.81 27.47 68.60 1.88 48.69 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.26 -12.86 6.54 99.48 0.65 -12.21 16 23 N -0.58 -13.88 9.05 -186.04 -1.68 -15.56 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 0.67 8.07 -2.39 -0.02 0.65 16 26 H 0.07 1.00 7.33 -2.38 -0.02 0.98 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.22 7.33 -2.39 -0.02 1.20 16 29 H 0.09 0.92 8.07 -2.38 -0.02 0.90 16 30 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.10 2.11 8.06 -2.39 -0.02 2.09 16 34 H 0.41 8.90 8.46 -92.71 -0.78 8.12 16 35 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 36 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 38 H 0.01 0.63 7.53 -2.39 -0.02 0.62 16 39 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -77.57 334.71 2.13 -75.44 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.21 Total: 9.17 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 8.43 Total: 14.37 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -8.35 Total: -122.59 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.88 Total: 48.69 kcal Total: -77.57 2.13 -75.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360729793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.720 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds