Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34257 * 125.75582 * 2 1 4 4 C 1.38043 * 107.41662 * 180.02562 * 3 2 1 5 5 C 1.47427 * 126.41624 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99498 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00456 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00240 * 180.02562 * 7 5 4 9 9 H 1.08992 * 112.84926 * 23.79527 * 8 7 5 10 10 C 1.53782 * 113.61580 * 154.99742 * 8 7 5 11 11 C 1.53784 * 87.08288 * 89.11246 * 10 8 7 12 12 H 1.08998 * 113.61680 * 270.88445 * 11 10 8 13 13 C 1.52996 * 113.61131 * 140.06322 * 11 10 8 14 14 N 1.46502 * 109.46957 * 174.99970 * 13 11 10 15 15 C 1.36942 * 120.00409 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99312 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00217 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00172 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46982 * 90.00289 * 19 17 15 21 21 H 1.48496 * 109.47372 * 210.00165 * 19 17 15 22 22 H 1.48501 * 109.46857 * 330.00230 * 19 17 15 23 23 C 1.53783 * 113.61302 * 252.49376 * 8 7 5 24 24 C 1.41288 * 107.17144 * 359.97438 * 4 3 2 25 25 N 1.30454 * 108.02309 * 359.97438 * 24 4 3 26 26 H 1.09002 * 109.47727 * 270.00915 * 1 2 3 27 27 H 1.09002 * 109.46796 * 30.00754 * 1 2 3 28 28 H 1.09001 * 109.47695 * 150.00526 * 1 2 3 29 29 H 1.08003 * 126.29080 * 0.03386 * 3 2 1 30 30 H 0.97002 * 119.99934 * 359.97438 * 7 5 4 31 31 H 1.08998 * 113.61549 * 203.66455 * 10 8 7 32 32 H 1.09003 * 113.61200 * 334.48267 * 10 8 7 33 33 H 1.08993 * 109.47777 * 295.00194 * 13 11 10 34 34 H 1.09000 * 109.47145 * 55.00457 * 13 11 10 35 35 H 0.97008 * 119.99816 * 0.02562 * 14 13 11 36 36 H 0.96994 * 120.00150 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.61311 * 25.43062 * 23 8 7 38 38 H 1.08994 * 113.61753 * 156.33543 * 23 8 7 39 39 H 1.08001 * 125.99348 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0006 5 6 4.7639 1.5059 -0.0013 6 8 4.6526 2.7169 -0.0010 7 7 5.9878 0.9417 -0.0024 8 6 7.1842 1.7871 -0.0026 9 1 6.9997 2.7816 0.4034 10 6 8.4246 1.0994 0.5919 11 6 8.7224 0.5855 -0.8267 12 1 8.2528 -0.3720 -1.0518 13 6 10.2079 0.6190 -1.1912 14 7 10.4020 0.0031 -2.5063 15 6 11.6585 -0.0814 -3.0441 16 1 12.5065 0.3056 -2.4986 17 6 11.8422 -0.6645 -4.2903 18 7 13.0499 -0.7453 -4.8075 19 14 10.3756 -1.3345 -5.2335 20 1 9.8093 -0.2644 -6.0934 21 1 10.8107 -2.4729 -6.0820 22 1 9.3408 -1.7987 -4.2749 23 6 7.9311 1.7973 -1.3468 24 6 3.5310 -0.7574 -0.0003 25 7 2.2825 -1.1357 0.0009 26 1 -0.3634 0.0002 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8900 -0.5137 29 1 1.9166 2.1170 0.0005 30 1 6.0765 -0.0243 -0.0023 31 1 9.1719 1.7972 0.9694 32 1 8.1865 0.3085 1.3031 33 1 10.5519 1.6529 -1.2199 34 1 10.7780 0.0671 -0.4439 35 1 9.6403 -0.3448 -2.9961 36 1 13.1783 -1.1531 -5.6781 37 1 7.2946 1.5688 -2.2017 38 1 8.5435 2.6859 -1.4993 39 1 4.3917 -1.4098 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734200374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 77.422204 kcal Electronic energy + Delta-G solvation = -20706.108133 eV Core-core repulsion = 17458.713911 eV Total energy + Delta-G solvation = -3247.394223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68914 -39.96344 -38.11945 -34.67038 -33.94180 -32.94506 -31.16372 -30.58803 -27.83111 -26.89365 -25.54577 -23.75336 -22.66207 -21.50358 -21.21750 -20.41856 -19.14407 -18.23278 -17.48948 -16.16647 -16.04876 -15.92317 -14.96003 -14.86869 -14.81067 -14.35236 -14.23068 -13.77522 -13.41110 -13.31248 -13.09509 -13.02882 -12.59857 -12.42429 -12.26324 -11.74397 -11.42380 -11.37867 -10.86787 -10.59161 -10.21996 -10.14564 -9.98465 -9.96504 -9.83152 -9.54672 -9.17166 -8.89818 -8.82046 -7.17779 -5.73419 -3.08123 1.21434 1.86639 1.94828 3.14128 3.31662 3.39784 3.43023 3.47667 4.04480 4.37972 4.56463 4.62194 4.62362 4.66305 4.73194 4.84162 4.89221 5.06907 5.07155 5.09528 5.35825 5.56827 5.70849 5.74460 5.89596 5.90801 5.98975 6.04070 6.17243 6.19898 6.32211 6.39795 6.62202 6.73390 6.87467 7.14433 7.49530 8.03832 8.20945 8.46146 9.25888 9.98492 10.18811 11.45260 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003365 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.459423 B = 8318.234121 C = 9140.820805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.366 5.366 3 C 0.128 3.872 4 C -0.293 4.293 5 C 0.598 3.402 6 O -0.552 6.552 7 N -0.706 5.706 8 C 0.118 3.882 9 H 0.101 0.899 10 C -0.136 4.136 11 C -0.119 4.119 12 H 0.086 0.914 13 C 0.167 3.833 14 N -0.756 5.756 15 C -0.242 4.242 16 H 0.089 0.911 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.142 4.142 24 C 0.083 3.917 25 N -0.298 5.298 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.189 0.811 30 H 0.400 0.600 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.770 2.511 13.276 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.145 5.145 3 C -0.024 4.024 4 C -0.308 4.308 5 C 0.385 3.615 6 O -0.430 6.430 7 N -0.356 5.356 8 C 0.013 3.987 9 H 0.119 0.881 10 C -0.175 4.175 11 C -0.138 4.138 12 H 0.104 0.896 13 C 0.040 3.960 14 N -0.401 5.401 15 C -0.372 4.372 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.181 4.181 24 C -0.105 4.105 25 N -0.117 5.117 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.206 0.794 30 H 0.234 0.766 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -26.572 2.392 13.258 29.792 hybrid contribution -0.349 -0.412 -0.893 1.044 sum -26.921 1.980 12.365 29.690 Atomic orbital electron populations 1.22006 0.73391 1.05096 1.03950 1.48445 1.07311 1.03886 1.54825 1.22985 0.90101 0.93759 0.95522 1.20279 0.93538 0.93537 1.23419 1.17191 0.82159 0.86866 0.75244 1.90768 1.86858 1.14178 1.51241 1.45436 1.04863 1.10033 1.75227 1.21910 0.83561 0.95189 0.98012 0.88089 1.23302 0.96666 1.00576 0.96952 1.22820 0.97663 0.98098 0.95228 0.89575 1.20619 0.91385 0.96367 0.87677 1.42710 1.06448 1.72592 1.18364 1.19084 0.85099 1.32635 1.00388 0.89269 1.24677 0.96086 1.01149 0.97436 1.69703 1.19780 1.50310 1.18633 0.86525 0.83000 0.78771 0.80094 1.21117 1.21796 1.20401 1.23461 0.98458 0.99371 0.96761 1.24117 0.95406 0.93949 0.97032 1.77209 1.01956 1.07759 1.24820 0.90151 0.88945 0.88783 0.79412 0.76598 0.88512 0.91125 0.95333 0.95582 0.80730 0.93116 0.91458 0.88858 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.44 59.85 0.68 1.04 16 2 N -0.37 -3.03 3.98 -67.60 -0.27 -3.30 16 3 C 0.13 1.13 11.30 -16.56 -0.19 0.95 16 4 C -0.29 -3.10 6.13 -105.07 -0.64 -3.75 16 5 C 0.60 7.55 7.81 -12.52 -0.10 7.45 16 6 O -0.55 -8.77 16.50 5.27 0.09 -8.68 16 7 N -0.71 -7.81 5.25 -54.09 -0.28 -8.09 16 8 C 0.12 1.43 4.32 -67.12 -0.29 1.14 16 9 H 0.10 1.30 7.46 -51.93 -0.39 0.91 16 10 C -0.14 -1.54 7.39 -25.92 -0.19 -1.73 16 11 C -0.12 -1.72 3.63 -89.80 -0.33 -2.04 16 12 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 13 C 0.17 3.16 6.10 -4.04 -0.02 3.14 16 14 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 15 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 18 N -0.94 -29.83 13.97 55.49 0.78 -29.05 16 19 Si 0.89 22.46 27.74 -169.99 -4.71 17.75 16 20 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 23 C -0.14 -1.98 7.43 -25.91 -0.19 -2.18 16 24 C 0.08 0.79 11.50 -16.98 -0.20 0.60 16 25 N -0.30 -3.11 12.50 30.86 0.39 -2.72 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.40 3.54 7.66 -40.82 -0.31 3.22 16 31 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.55 7.85 -51.93 -0.41 0.15 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.36 8.44 5.53 -40.82 -0.23 8.22 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 39 H 0.19 1.26 7.50 -52.49 -0.39 0.87 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -36.95 332.52 -6.58 -43.54 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.53 Total: 6.55 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.72 Total: -2.55 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.28 Total: -61.62 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.95 -6.58 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734200374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.957 kcal (2) G-P(sol) polarization free energy of solvation -36.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds