Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34257 * 125.75582 * 2 1 4 4 C 1.38043 * 107.41662 * 180.02562 * 3 2 1 5 5 C 1.47427 * 126.41624 * 179.97438 * 4 3 2 6 6 O 1.21611 * 119.99498 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00456 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00240 * 180.02562 * 7 5 4 9 9 H 1.08992 * 112.84926 * 23.79527 * 8 7 5 10 10 C 1.53782 * 113.61580 * 154.99742 * 8 7 5 11 11 C 1.53784 * 87.08288 * 89.11246 * 10 8 7 12 12 H 1.08998 * 113.61680 * 270.88445 * 11 10 8 13 13 C 1.52996 * 113.61131 * 140.06322 * 11 10 8 14 14 N 1.46502 * 109.46957 * 174.99970 * 13 11 10 15 15 C 1.36942 * 120.00409 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99312 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00217 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00139 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00172 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46982 * 90.00289 * 19 17 15 21 21 H 1.48496 * 109.47372 * 210.00165 * 19 17 15 22 22 H 1.48501 * 109.46857 * 330.00230 * 19 17 15 23 23 C 1.53783 * 113.61302 * 252.49376 * 8 7 5 24 24 C 1.41288 * 107.17144 * 359.97438 * 4 3 2 25 25 N 1.30454 * 108.02309 * 359.97438 * 24 4 3 26 26 H 1.09002 * 109.47727 * 270.00915 * 1 2 3 27 27 H 1.09002 * 109.46796 * 30.00754 * 1 2 3 28 28 H 1.09001 * 109.47695 * 150.00526 * 1 2 3 29 29 H 1.08003 * 126.29080 * 0.03386 * 3 2 1 30 30 H 0.97002 * 119.99934 * 359.97438 * 7 5 4 31 31 H 1.08998 * 113.61549 * 203.66455 * 10 8 7 32 32 H 1.09003 * 113.61200 * 334.48267 * 10 8 7 33 33 H 1.08993 * 109.47777 * 295.00194 * 13 11 10 34 34 H 1.09000 * 109.47145 * 55.00457 * 13 11 10 35 35 H 0.97008 * 119.99816 * 0.02562 * 14 13 11 36 36 H 0.96994 * 120.00150 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.61311 * 25.43062 * 23 8 7 38 38 H 1.08994 * 113.61753 * 156.33543 * 23 8 7 39 39 H 1.08001 * 125.99348 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0006 5 6 4.7639 1.5059 -0.0013 6 8 4.6526 2.7169 -0.0010 7 7 5.9878 0.9417 -0.0024 8 6 7.1842 1.7871 -0.0026 9 1 6.9997 2.7816 0.4034 10 6 8.4246 1.0994 0.5919 11 6 8.7224 0.5855 -0.8267 12 1 8.2528 -0.3720 -1.0518 13 6 10.2079 0.6190 -1.1912 14 7 10.4020 0.0031 -2.5063 15 6 11.6585 -0.0814 -3.0441 16 1 12.5065 0.3056 -2.4986 17 6 11.8422 -0.6645 -4.2903 18 7 13.0499 -0.7453 -4.8075 19 14 10.3756 -1.3345 -5.2335 20 1 9.8093 -0.2644 -6.0934 21 1 10.8107 -2.4729 -6.0820 22 1 9.3408 -1.7987 -4.2749 23 6 7.9311 1.7973 -1.3468 24 6 3.5310 -0.7574 -0.0003 25 7 2.2825 -1.1357 0.0009 26 1 -0.3634 0.0002 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3634 -0.8900 -0.5137 29 1 1.9166 2.1170 0.0005 30 1 6.0765 -0.0243 -0.0023 31 1 9.1719 1.7972 0.9694 32 1 8.1865 0.3085 1.3031 33 1 10.5519 1.6529 -1.2199 34 1 10.7780 0.0671 -0.4439 35 1 9.6403 -0.3448 -2.9961 36 1 13.1783 -1.1531 -5.6781 37 1 7.2946 1.5688 -2.2017 38 1 8.5435 2.6859 -1.4993 39 1 4.3917 -1.4098 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734200374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 49.930862 kcal Electronic energy + Delta-G solvation = -20707.300247 eV Core-core repulsion = 17458.713911 eV Total energy + Delta-G solvation = -3248.586337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.36609 -40.96153 -39.19022 -36.45269 -34.71346 -34.02075 -33.09973 -31.33801 -28.99240 -27.84447 -26.58035 -25.09391 -23.90372 -22.87485 -22.01401 -21.23247 -20.39585 -19.42501 -18.95986 -17.07220 -16.76996 -16.65895 -16.60562 -16.01926 -15.73731 -15.64469 -15.45662 -14.97615 -14.75462 -14.43865 -13.94374 -13.80709 -13.56814 -13.45965 -13.44423 -13.29509 -12.97205 -12.70122 -12.18320 -12.10975 -11.85852 -11.67007 -11.35829 -11.13892 -10.93067 -10.87391 -10.60886 -10.08150 -9.64232 -9.25814 -8.01960 -5.34564 0.52277 1.13706 1.37668 1.41795 1.43740 1.48978 2.28348 2.45326 2.49228 3.29392 3.50270 3.51998 3.64414 3.79759 3.92159 3.98866 4.09400 4.14882 4.16106 4.41513 4.55392 4.57528 4.68222 4.69582 4.80073 4.90466 4.94407 4.98748 5.03278 5.17744 5.30771 5.36117 5.41942 5.72588 5.78444 5.85600 6.22790 6.47334 6.65873 7.09970 7.31289 7.87660 8.06374 9.19885 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.003365 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.459423 B = 8318.234121 C = 9140.820805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.363 5.363 3 C 0.133 3.867 4 C -0.318 4.318 5 C 0.597 3.403 6 O -0.591 6.591 7 N -0.697 5.697 8 C 0.127 3.873 9 H 0.094 0.906 10 C -0.117 4.117 11 C -0.115 4.115 12 H 0.095 0.905 13 C 0.162 3.838 14 N -0.758 5.758 15 C -0.234 4.234 16 H 0.055 0.945 17 C -0.068 4.068 18 N -0.986 5.986 19 Si 0.957 3.043 20 H -0.281 1.281 21 H -0.295 1.295 22 H -0.249 1.249 23 C -0.146 4.146 24 C 0.085 3.915 25 N -0.327 5.327 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.209 0.791 30 H 0.412 0.588 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.026 0.974 35 H 0.365 0.635 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.642 1.897 14.158 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.141 5.141 3 C -0.021 4.021 4 C -0.333 4.333 5 C 0.387 3.613 6 O -0.473 6.473 7 N -0.347 5.347 8 C 0.022 3.978 9 H 0.113 0.887 10 C -0.156 4.156 11 C -0.134 4.134 12 H 0.113 0.887 13 C 0.036 3.964 14 N -0.404 5.404 15 C -0.365 4.365 16 H 0.073 0.927 17 C -0.259 4.259 18 N -0.637 5.637 19 Si 0.784 3.216 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.173 1.173 23 C -0.185 4.185 24 C -0.103 4.103 25 N -0.147 5.147 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.225 0.775 30 H 0.249 0.751 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.198 0.802 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -29.492 1.750 14.190 32.775 hybrid contribution 0.548 -0.154 -1.100 1.239 sum -28.944 1.596 13.090 31.806 Atomic orbital electron populations 1.22397 0.70973 1.06571 1.05408 1.48805 1.08666 1.03145 1.53465 1.23352 0.89868 0.94749 0.94088 1.20243 0.93428 0.93900 1.25741 1.17477 0.82934 0.86532 0.74362 1.90742 1.87417 1.15855 1.53317 1.45352 1.04213 1.10613 1.74550 1.21738 0.84073 0.95381 0.96656 0.88747 1.23227 0.95972 1.00950 0.95439 1.22764 0.94171 0.98760 0.97673 0.88708 1.20825 0.94845 0.95412 0.85325 1.42743 1.04713 1.72871 1.20051 1.19084 0.86192 1.31127 1.00107 0.92670 1.25543 0.99233 1.02329 0.98773 1.69890 1.22512 1.52085 1.19198 0.85373 0.79699 0.77767 0.78745 1.20740 1.22200 1.17314 1.23478 0.98559 0.98945 0.97500 1.24468 0.95924 0.93786 0.96090 1.77163 1.02543 1.09131 1.25902 0.88677 0.86378 0.88477 0.77474 0.75130 0.87731 0.88864 0.95798 0.95627 0.80153 0.93372 0.92432 0.89501 0.77112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.44 127.77 1.46 1.88 16 2 N -0.36 -5.24 3.98 -367.77 -1.46 -6.70 16 3 C 0.13 2.10 11.30 84.28 0.95 3.05 16 4 C -0.32 -6.22 6.13 -20.15 -0.12 -6.34 16 5 C 0.60 14.26 7.81 86.66 0.68 14.94 16 6 O -0.59 -18.36 16.50 -4.07 -0.07 -18.43 16 7 N -0.70 -13.94 5.25 -443.31 -2.33 -16.26 16 8 C 0.13 2.82 4.32 45.52 0.20 3.01 16 9 H 0.09 2.30 7.46 -2.39 -0.02 2.28 16 10 C -0.12 -2.31 7.39 31.12 0.23 -2.08 16 11 C -0.12 -3.05 3.63 -10.27 -0.04 -3.08 16 12 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 13 C 0.16 5.95 6.10 86.38 0.53 6.48 16 14 N -0.76 -35.60 5.41 -343.47 -1.86 -37.46 16 15 C -0.23 -13.60 10.47 84.03 0.88 -12.72 16 16 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 18 N -0.99 -64.26 13.97 21.65 0.30 -63.95 16 19 Si 0.96 46.09 27.74 68.60 1.90 47.99 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 23 C -0.15 -3.86 7.43 31.12 0.23 -3.63 16 24 C 0.08 1.45 11.50 85.65 0.99 2.44 16 25 N -0.33 -6.24 12.50 -56.27 -0.70 -6.95 16 26 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.41 6.12 7.66 -92.71 -0.71 5.41 16 31 H 0.10 1.96 8.10 -2.39 -0.02 1.94 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.37 16.31 5.53 -92.70 -0.51 15.80 16 36 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 2.40 7.90 -2.39 -0.02 2.38 16 39 H 0.21 2.29 7.50 -2.91 -0.02 2.27 16 Total: -1.00 -80.87 332.52 2.02 -78.85 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.21 Total: 22.57 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 6.45 Total: 0.34 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -6.05 Total: -131.32 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.07 Total: -18.43 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -80.87 2.02 -78.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734200374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.780 kcal (2) G-P(sol) polarization free energy of solvation -80.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds