Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.39003 * 120.00186 * 179.72032 * 2 1 3 5 5 C 1.39143 * 119.70476 * 4.73315 * 4 2 1 6 6 C 1.38288 * 119.09571 * 179.75144 * 5 4 2 7 7 C 1.38889 * 118.50742 * 0.50957 * 6 5 4 8 8 C 1.38023 * 119.32739 * 359.73155 * 7 6 5 9 9 C 1.50698 * 119.57128 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47443 * 95.01724 * 9 8 7 11 11 C 1.34773 * 120.00109 * 180.02562 * 10 9 8 12 12 O 1.21591 * 120.00020 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00052 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00129 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47035 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99571 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99627 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00452 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46946 * 89.99944 * 19 17 15 21 21 H 1.48492 * 109.47402 * 210.00472 * 19 17 15 22 22 H 1.48499 * 109.46769 * 330.00488 * 19 17 15 23 23 N 1.31968 * 120.85553 * 0.02562 * 8 7 6 24 24 H 1.08995 * 109.47304 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46512 * 120.00448 * 1 2 3 26 26 H 1.08998 * 109.47174 * 239.99569 * 1 2 3 27 27 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 28 28 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 29 29 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 30 30 H 1.08002 * 120.45106 * 359.97237 * 5 4 2 31 31 H 1.08002 * 120.75127 * 180.21962 * 6 5 4 32 32 H 1.08003 * 120.33514 * 179.74904 * 7 6 5 33 33 H 1.08996 * 109.47006 * 215.02035 * 9 8 7 34 34 H 1.09003 * 109.47068 * 335.02016 * 9 8 7 35 35 H 0.97001 * 119.99579 * 0.02562 * 10 9 8 36 36 H 0.97010 * 120.00046 * 0.02562 * 13 11 10 37 37 H 1.08995 * 109.47340 * 300.00308 * 14 13 11 38 38 H 1.09001 * 109.46825 * 60.00594 * 14 13 11 39 39 H 0.97006 * 119.99929 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 0.0059 5 6 1.4618 -2.4036 -0.0880 6 6 2.1663 -3.5936 -0.0862 7 6 3.5502 -3.5445 0.0206 8 6 4.1778 -2.3189 0.1154 9 6 5.6792 -2.2591 0.2309 10 7 6.2640 -2.0660 -1.0983 11 6 7.6017 -1.9830 -1.2404 12 8 8.3231 -2.0680 -0.2654 13 7 8.1397 -1.8049 -2.4632 14 6 9.5936 -1.7141 -2.6177 15 6 9.9329 -1.5163 -4.0727 16 1 9.1443 -1.4630 -4.8086 17 6 11.2501 -1.4033 -4.4642 18 7 11.5461 -1.2301 -5.7338 19 14 12.6141 -1.4946 -3.1912 20 1 13.0433 -2.9067 -3.0262 21 1 13.7679 -0.6759 -3.6422 22 1 12.1152 -0.9741 -1.8930 23 7 3.4802 -1.1987 0.1063 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3632 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8899 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0284 -0.5138 30 1 0.3845 -2.4054 -0.1648 31 1 1.6517 -4.5401 -0.1614 32 1 4.1293 -4.4560 0.0291 33 1 5.9611 -1.4272 0.8763 34 1 6.0481 -3.1916 0.6582 35 1 5.6885 -1.9979 -1.8761 36 1 7.5640 -1.7360 -3.2410 37 1 9.9684 -0.8696 -2.0395 38 1 10.0553 -2.6339 -2.2584 39 1 12.4728 -1.1502 -6.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426463470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 20.153821 kcal Electronic energy + Delta-G solvation = -20617.423234 eV Core-core repulsion = 17367.545668 eV Total energy + Delta-G solvation = -3249.877566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60678 -39.16752 -36.99066 -34.69994 -34.00183 -32.61408 -32.25836 -30.85905 -28.70112 -27.92179 -26.13483 -25.38093 -22.44215 -21.90325 -21.36299 -20.23853 -18.31992 -17.45936 -16.81913 -16.27118 -15.95484 -15.85234 -15.51482 -14.99467 -14.50179 -14.39300 -14.19625 -13.77762 -13.38934 -13.11331 -12.96027 -12.91265 -12.81258 -12.53162 -12.31693 -12.17928 -11.92476 -11.87380 -10.93284 -10.70993 -10.29997 -9.94852 -9.89430 -9.57493 -9.48039 -9.39124 -8.80125 -8.69525 -7.93951 -7.81800 -6.15999 -4.17483 0.96763 1.27722 2.63871 3.27403 3.32670 3.39477 3.48414 3.84608 3.88298 4.15212 4.39233 4.56094 4.62030 4.82905 4.95789 5.02023 5.05904 5.06655 5.17403 5.19765 5.24817 5.38961 5.41870 5.58756 5.69764 5.82941 5.90017 6.09427 6.34325 6.67232 6.78829 6.81067 7.08726 7.18281 7.31189 7.47567 7.63656 7.97865 8.33960 8.75321 8.87653 9.27660 9.46172 10.96064 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003050 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.834101 B = 9177.828833 C = 9517.341906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.620 5.620 3 C 0.100 3.900 4 C 0.399 3.601 5 C -0.234 4.234 6 C -0.036 4.036 7 C -0.213 4.213 8 C 0.162 3.838 9 C 0.194 3.806 10 N -0.747 5.747 11 C 0.697 3.303 12 O -0.604 6.604 13 N -0.722 5.722 14 C 0.238 3.762 15 C -0.541 4.541 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.259 1.259 23 N -0.525 5.525 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.394 0.606 36 H 0.392 0.608 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.320 -0.759 11.508 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.334 5.334 3 C -0.043 4.043 4 C 0.164 3.836 5 C -0.259 4.259 6 C -0.061 4.061 7 C -0.236 4.236 8 C 0.024 3.976 9 C 0.069 3.931 10 N -0.405 5.405 11 C 0.397 3.603 12 O -0.483 6.483 13 N -0.375 5.375 14 C 0.116 3.884 15 C -0.579 4.579 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 N -0.243 5.243 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.225 0.775 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.107 0.176 12.335 27.080 hybrid contribution -0.353 -0.714 -0.303 0.853 sum -24.461 -0.538 12.032 27.265 Atomic orbital electron populations 1.21645 0.78535 1.02894 1.01310 1.46201 1.04979 1.03179 1.79090 1.21592 0.97657 0.83664 1.01378 1.18270 0.88218 0.85878 0.91188 1.21404 1.00848 0.91910 1.11783 1.21315 0.93851 0.97839 0.93143 1.21738 0.95186 0.98848 1.07823 1.20898 0.95508 0.87780 0.93457 1.19830 0.84922 1.02991 0.85381 1.44969 1.05683 1.80852 1.08960 1.16052 0.81319 0.78299 0.84622 1.90865 1.59972 1.59094 1.38391 1.45375 1.09971 1.76090 1.06024 1.19358 0.75032 0.96535 0.97502 1.21109 0.94083 1.51867 0.90838 0.90328 1.24786 0.98560 0.93950 0.95383 1.69887 1.19255 1.48908 1.15167 0.86804 0.81556 0.78796 0.82478 1.19862 1.20994 1.18366 1.66954 1.06068 1.31573 1.19661 0.90368 0.92528 0.92619 0.93453 0.90267 0.91920 0.85243 0.84841 0.84736 0.90236 0.90100 0.77327 0.77479 0.95893 0.96332 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 9.40 59.85 0.56 1.11 16 2 N -0.62 -5.74 3.39 -189.66 -0.64 -6.38 16 3 C 0.10 0.87 10.39 59.85 0.62 1.49 16 4 C 0.40 4.48 7.37 -155.02 -1.14 3.34 16 5 C -0.23 -2.15 9.34 -39.23 -0.37 -2.52 16 6 C -0.04 -0.31 10.17 -39.32 -0.40 -0.71 16 7 C -0.21 -2.18 9.71 -39.42 -0.38 -2.56 16 8 C 0.16 2.00 6.14 -82.61 -0.51 1.49 16 9 C 0.19 2.71 5.98 -5.19 -0.03 2.68 16 10 N -0.75 -11.71 5.55 -66.42 -0.37 -12.08 16 11 C 0.70 14.35 8.57 -86.93 -0.74 13.61 16 12 O -0.60 -14.69 16.34 5.29 0.09 -14.60 16 13 N -0.72 -15.49 5.55 -66.41 -0.37 -15.86 16 14 C 0.24 6.09 4.50 -5.19 -0.02 6.06 16 15 C -0.54 -15.20 9.83 -34.44 -0.34 -15.53 16 16 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 19 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 23 N -0.52 -6.83 9.08 -8.67 -0.08 -6.91 16 24 H 0.08 0.30 7.79 -51.93 -0.40 -0.10 16 25 H 0.06 0.28 7.76 -51.93 -0.40 -0.13 16 26 H 0.06 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 29 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 30 H 0.13 0.88 6.71 -52.49 -0.35 0.52 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.39 5.39 8.48 -40.82 -0.35 5.04 16 36 H 0.39 7.45 8.34 -40.82 -0.34 7.11 16 37 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -34.78 332.85 -8.62 -43.40 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.52 Total: 5.84 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -2.85 Total: 10.58 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.69 Total: -67.43 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.78 -8.62 -43.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426463470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.558 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds