Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.39003 * 120.00186 * 179.72032 * 2 1 3 5 5 C 1.39143 * 119.70476 * 4.73315 * 4 2 1 6 6 C 1.38288 * 119.09571 * 179.75144 * 5 4 2 7 7 C 1.38889 * 118.50742 * 0.50957 * 6 5 4 8 8 C 1.38023 * 119.32739 * 359.73155 * 7 6 5 9 9 C 1.50698 * 119.57128 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47443 * 95.01724 * 9 8 7 11 11 C 1.34773 * 120.00109 * 180.02562 * 10 9 8 12 12 O 1.21591 * 120.00020 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00052 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00129 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47035 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00370 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99571 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99627 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00452 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46946 * 89.99944 * 19 17 15 21 21 H 1.48492 * 109.47402 * 210.00472 * 19 17 15 22 22 H 1.48499 * 109.46769 * 330.00488 * 19 17 15 23 23 N 1.31968 * 120.85553 * 0.02562 * 8 7 6 24 24 H 1.08995 * 109.47304 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46512 * 120.00448 * 1 2 3 26 26 H 1.08998 * 109.47174 * 239.99569 * 1 2 3 27 27 H 1.09003 * 109.47269 * 89.99349 * 3 2 1 28 28 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 29 29 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 30 30 H 1.08002 * 120.45106 * 359.97237 * 5 4 2 31 31 H 1.08002 * 120.75127 * 180.21962 * 6 5 4 32 32 H 1.08003 * 120.33514 * 179.74904 * 7 6 5 33 33 H 1.08996 * 109.47006 * 215.02035 * 9 8 7 34 34 H 1.09003 * 109.47068 * 335.02016 * 9 8 7 35 35 H 0.97001 * 119.99579 * 0.02562 * 10 9 8 36 36 H 0.97010 * 120.00046 * 0.02562 * 13 11 10 37 37 H 1.08995 * 109.47340 * 300.00308 * 14 13 11 38 38 H 1.09001 * 109.46825 * 60.00594 * 14 13 11 39 39 H 0.97006 * 119.99929 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 0.0059 5 6 1.4618 -2.4036 -0.0880 6 6 2.1663 -3.5936 -0.0862 7 6 3.5502 -3.5445 0.0206 8 6 4.1778 -2.3189 0.1154 9 6 5.6792 -2.2591 0.2309 10 7 6.2640 -2.0660 -1.0983 11 6 7.6017 -1.9830 -1.2404 12 8 8.3231 -2.0680 -0.2654 13 7 8.1397 -1.8049 -2.4632 14 6 9.5936 -1.7141 -2.6177 15 6 9.9329 -1.5163 -4.0727 16 1 9.1443 -1.4630 -4.8086 17 6 11.2501 -1.4033 -4.4642 18 7 11.5461 -1.2301 -5.7338 19 14 12.6141 -1.4946 -3.1912 20 1 13.0433 -2.9067 -3.0262 21 1 13.7679 -0.6759 -3.6422 22 1 12.1152 -0.9741 -1.8930 23 7 3.4802 -1.1987 0.1063 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3632 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8899 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5138 29 1 1.6084 2.0284 -0.5138 30 1 0.3845 -2.4054 -0.1648 31 1 1.6517 -4.5401 -0.1614 32 1 4.1293 -4.4560 0.0291 33 1 5.9611 -1.4272 0.8763 34 1 6.0481 -3.1916 0.6582 35 1 5.6885 -1.9979 -1.8761 36 1 7.5640 -1.7360 -3.2410 37 1 9.9684 -0.8696 -2.0395 38 1 10.0553 -2.6339 -2.2584 39 1 12.4728 -1.1502 -6.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426463470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = -5.430871 kcal Electronic energy + Delta-G solvation = -20618.532670 eV Core-core repulsion = 17367.545668 eV Total energy + Delta-G solvation = -3250.987002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46246 -40.73898 -37.75288 -36.29245 -35.62422 -34.39546 -33.38042 -31.85442 -29.94600 -29.13208 -27.26693 -26.11102 -24.12959 -22.96060 -22.22370 -21.92727 -20.00036 -18.49817 -18.11076 -17.71579 -17.25367 -16.60158 -16.49974 -16.41314 -16.15040 -15.53170 -15.27714 -15.08515 -14.63824 -14.50960 -14.37627 -14.12682 -13.74975 -13.54370 -13.44405 -13.09047 -13.02725 -12.86318 -12.67292 -12.58513 -11.90776 -11.64509 -11.39421 -10.99464 -10.90147 -10.57833 -10.39200 -10.31992 -9.67097 -8.51632 -8.38393 -6.45261 0.15271 0.54189 1.35556 1.37068 1.51198 1.88789 2.02923 2.20788 2.30855 2.94013 2.97249 3.26466 3.53831 3.83324 4.03260 4.20793 4.31972 4.44484 4.46296 4.52489 4.57370 4.65122 4.76484 4.78269 4.83048 4.89638 4.97692 5.07441 5.13361 5.26086 5.36638 5.43172 5.55407 5.64153 5.95957 6.04046 6.26892 6.37132 6.56504 7.13955 7.20045 7.24422 7.64599 8.76467 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028309 B = 0.003050 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.834101 B = 9177.828833 C = 9517.341906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.626 5.626 3 C 0.101 3.899 4 C 0.378 3.622 5 C -0.228 4.228 6 C -0.032 4.032 7 C -0.213 4.213 8 C 0.143 3.857 9 C 0.197 3.803 10 N -0.726 5.726 11 C 0.698 3.302 12 O -0.641 6.641 13 N -0.722 5.722 14 C 0.252 3.748 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.932 5.932 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.260 1.260 23 N -0.556 5.556 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.406 0.594 36 H 0.404 0.596 37 H 0.010 0.990 38 H 0.012 0.988 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.335 -1.540 12.275 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.341 5.341 3 C -0.042 4.042 4 C 0.142 3.858 5 C -0.253 4.253 6 C -0.058 4.058 7 C -0.236 4.236 8 C 0.006 3.994 9 C 0.073 3.927 10 N -0.382 5.382 11 C 0.398 3.602 12 O -0.524 6.524 13 N -0.375 5.375 14 C 0.127 3.873 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.571 5.571 19 Si 0.762 3.238 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.185 1.185 23 N -0.275 5.275 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.241 0.759 36 H 0.239 0.761 37 H 0.028 0.972 38 H 0.030 0.970 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.201 -0.604 13.089 29.295 hybrid contribution 0.096 -0.445 -0.560 0.722 sum -26.105 -1.049 12.528 28.975 Atomic orbital electron populations 1.21871 0.76329 1.04445 1.02129 1.46493 1.06350 1.02596 1.78629 1.21555 0.97119 0.84414 1.01108 1.18673 0.87937 0.87411 0.91729 1.21750 1.02208 0.91208 1.10119 1.21718 0.93187 0.99175 0.91687 1.21913 0.96252 0.98326 1.07145 1.20624 0.94262 0.88744 0.95810 1.19857 0.86626 1.02460 0.83800 1.44802 1.03956 1.79049 1.10436 1.16115 0.82556 0.77929 0.83583 1.90835 1.61360 1.60748 1.39417 1.45111 1.08731 1.76590 1.07074 1.18968 0.77324 0.95534 0.95442 1.21276 0.93861 1.51535 0.91708 0.92412 1.25593 1.01018 0.93560 0.97217 1.69985 1.20206 1.49957 1.16965 0.85832 0.78808 0.79383 0.79732 1.18790 1.19780 1.18479 1.66839 1.07464 1.32277 1.20917 0.88637 0.91537 0.91768 0.93822 0.92886 0.89467 0.82559 0.81456 0.83459 0.92095 0.89438 0.75937 0.76127 0.97194 0.96984 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 9.40 127.77 1.20 2.00 16 2 N -0.63 -10.67 3.39 -753.96 -2.56 -13.23 16 3 C 0.10 1.71 10.39 127.77 1.33 3.04 16 4 C 0.38 7.99 7.37 133.07 0.98 8.97 16 5 C -0.23 -3.55 9.34 22.50 0.21 -3.34 16 6 C -0.03 -0.46 10.17 22.44 0.23 -0.23 16 7 C -0.21 -3.95 9.71 22.37 0.22 -3.73 16 8 C 0.14 3.45 6.14 42.49 0.26 3.71 16 9 C 0.20 5.53 5.98 85.63 0.51 6.04 16 10 N -0.73 -22.63 5.55 -482.31 -2.68 -25.30 16 11 C 0.70 28.80 8.57 179.06 1.53 30.33 16 12 O -0.64 -31.43 16.34 -4.00 -0.07 -31.50 16 13 N -0.72 -31.03 5.55 -482.30 -2.68 -33.71 16 14 C 0.25 12.89 4.50 85.64 0.38 13.28 16 15 C -0.55 -31.00 9.83 25.60 0.25 -30.75 16 16 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 17 C 0.03 1.52 5.47 84.65 0.46 1.98 16 18 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 19 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 20 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 23 N -0.56 -14.37 9.08 -181.34 -1.65 -16.01 16 24 H 0.09 0.47 7.79 -2.39 -0.02 0.45 16 25 H 0.07 0.44 7.76 -2.39 -0.02 0.42 16 26 H 0.06 0.45 8.09 -2.39 -0.02 0.43 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 1.17 7.46 -2.39 -0.02 1.15 16 29 H 0.09 0.99 7.92 -2.38 -0.02 0.97 16 30 H 0.16 1.51 6.71 -2.91 -0.02 1.49 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.33 8.04 -2.39 -0.02 2.31 16 35 H 0.41 10.89 8.48 -92.71 -0.79 10.10 16 36 H 0.40 15.35 8.34 -92.70 -0.77 14.58 16 37 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 38 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 39 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -75.28 332.85 -0.41 -75.69 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.54 Total: 22.16 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 7.57 Total: 31.29 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -9.26 Total: -144.51 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.07 Total: -31.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -75.28 -0.41 -75.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426463470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.262 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds