Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00039 * 2 1 4 4 C 1.46897 * 111.00054 * 123.95354 * 2 1 3 5 5 C 1.50703 * 115.55115 * 321.44888 * 4 2 1 6 6 O 1.21298 * 119.99711 * 117.15623 * 5 4 2 7 7 N 1.34773 * 120.00120 * 297.16615 * 5 4 2 8 8 C 1.40151 * 120.00045 * 185.09260 * 7 5 4 9 9 C 1.40411 * 125.97621 * 359.97438 * 8 7 5 10 10 C 1.35238 * 107.87308 * 179.97438 * 9 8 7 11 11 N 1.34976 * 107.85811 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.97188 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46934 * 125.00003 * 12 11 10 14 14 H 1.08002 * 119.99591 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99895 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99866 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46926 * 59.99958 * 17 15 13 19 19 H 1.48493 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47083 * 300.00284 * 17 15 13 21 21 N 1.31224 * 125.97521 * 179.68347 * 8 7 5 22 22 C 1.53006 * 117.50071 * 175.77855 * 4 2 1 23 23 C 1.52993 * 60.03134 * 252.47592 * 22 4 2 24 24 H 1.09000 * 109.47224 * 301.92391 * 1 2 3 25 25 H 1.08998 * 109.47478 * 61.92253 * 1 2 3 26 26 H 1.08999 * 109.47431 * 181.92391 * 1 2 3 27 27 H 1.09004 * 109.47236 * 183.95491 * 3 2 1 28 28 H 1.09004 * 109.46792 * 303.95184 * 3 2 1 29 29 H 1.08992 * 109.47241 * 63.95638 * 3 2 1 30 30 H 0.96997 * 119.99794 * 5.08324 * 7 5 4 31 31 H 1.08005 * 126.06364 * 359.97157 * 9 8 7 32 32 H 1.07999 * 126.06911 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.46964 * 244.99713 * 12 11 10 34 34 H 1.08994 * 109.47163 * 5.00213 * 12 11 10 35 35 H 0.97000 * 120.00197 * 179.97438 * 16 15 13 36 36 H 1.09002 * 117.49726 * 359.97438 * 22 4 2 37 37 H 1.09000 * 117.49788 * 144.96945 * 22 4 2 38 38 H 1.09001 * 117.50085 * 107.50327 * 23 22 4 39 39 H 1.09000 * 117.49879 * 252.51898 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.2357 -0.6148 2.4303 6 8 0.6921 -1.5771 2.9303 7 7 1.1600 0.5894 3.0306 8 6 0.5459 0.7099 4.2847 9 6 -0.0298 -0.3351 5.0250 10 6 -0.5133 0.1880 6.1746 11 7 -0.2565 1.5130 6.1666 12 6 -0.6103 2.4645 7.2229 13 6 0.6263 3.2000 7.6713 14 1 1.5803 2.9802 7.2154 15 6 0.5396 4.1533 8.6636 16 7 -0.6221 4.4205 9.2191 17 14 2.0725 5.0644 9.2200 18 1 2.6581 5.7970 8.0686 19 1 1.7139 6.0289 10.2905 20 1 3.0644 4.0909 9.7433 21 7 0.4131 1.8181 4.9747 22 6 3.5122 -0.9463 1.2265 23 6 2.6230 -2.1305 0.8421 24 1 -0.3634 0.5434 0.8722 25 1 -0.3634 0.4837 -0.9067 26 1 -0.3634 -1.0271 0.0345 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9232 30 1 1.5307 1.3727 2.5949 31 1 -0.0780 -1.3727 4.7289 32 1 -1.0157 -0.3577 6.9596 33 1 -1.3388 3.1789 6.8392 34 1 -1.0394 1.9263 8.0679 35 1 -0.6831 5.0909 9.9174 36 1 4.1194 -0.4969 0.4407 37 1 3.9605 -0.9552 2.2200 38 1 2.6452 -2.4602 -0.1966 39 1 2.4861 -2.9183 1.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597262316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 88.001605 kcal Electronic energy + Delta-G solvation = -21534.589160 eV Core-core repulsion = 18287.653694 eV Total energy + Delta-G solvation = -3246.935466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97685 -39.96409 -37.53155 -35.08529 -34.29972 -33.35175 -30.99130 -29.37050 -27.93282 -26.91133 -25.25816 -23.76080 -22.61046 -22.48208 -21.00030 -19.93196 -19.19967 -17.38096 -16.75070 -16.60526 -16.07610 -15.52721 -14.92963 -14.87429 -14.71385 -14.28770 -14.14768 -13.75485 -13.67013 -12.86549 -12.55930 -12.33454 -12.26873 -12.22268 -11.97141 -11.80628 -11.61873 -11.13636 -10.97141 -10.88622 -10.67576 -10.48366 -10.28626 -10.07810 -9.73603 -9.55094 -8.69686 -8.65694 -8.19012 -7.52847 -6.27199 -4.32610 2.15748 2.64173 2.84649 3.23325 3.26756 3.31016 3.40183 3.43488 3.69683 3.79478 4.28941 4.43993 4.62463 4.72671 4.84294 5.07009 5.08354 5.25160 5.27680 5.37909 5.41348 5.51076 5.60232 5.70406 5.72788 5.76968 5.92874 6.20885 6.42710 6.50255 6.59233 6.63654 6.81674 7.01305 7.33715 7.50341 7.67416 7.85069 7.99757 8.15350 8.57748 8.76240 9.33137 10.81585 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003862 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.886647 B = 7248.608238 C = 7599.037225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.494 5.494 3 C 0.015 3.985 4 C -0.002 4.002 5 C 0.536 3.464 6 O -0.509 6.509 7 N -0.628 5.628 8 C 0.253 3.747 9 C -0.288 4.288 10 C 0.053 3.947 11 N -0.317 5.317 12 C 0.258 3.742 13 C -0.530 4.530 14 H 0.068 0.932 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.303 5.303 22 C -0.153 4.153 23 C -0.121 4.121 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.407 0.593 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -9.141 -16.820 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.218 5.218 3 C -0.133 4.133 4 C -0.096 4.096 5 C 0.319 3.681 6 O -0.381 6.381 7 N -0.277 5.277 8 C 0.000 4.000 9 C -0.319 4.319 10 C -0.098 4.098 11 N -0.099 5.099 12 C 0.141 3.859 13 C -0.569 4.569 14 H 0.086 0.914 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.134 5.134 22 C -0.190 4.190 23 C -0.159 4.159 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.244 0.756 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.634 -8.603 -16.614 19.275 hybrid contribution 0.371 0.697 0.978 1.257 sum 5.005 -7.907 -15.636 18.222 Atomic orbital electron populations 1.22512 0.86098 1.03055 1.01484 1.62084 1.08788 1.13857 1.37097 1.22594 1.01459 0.88252 1.01035 1.21723 0.96371 1.03332 0.88197 1.20256 0.80540 0.82149 0.85111 1.90640 1.44230 1.38588 1.64619 1.42805 1.57200 1.10825 1.16854 1.19166 0.99622 0.93637 0.87566 1.21497 1.13224 1.00781 0.96396 1.22570 1.01871 0.85793 0.99528 1.49108 1.39989 1.06711 1.14096 1.19760 0.97530 0.86970 0.81666 1.21208 0.94097 1.21288 1.20262 0.91379 1.24939 0.96866 0.96438 0.95750 1.69905 1.23866 1.33242 1.26317 0.86380 0.82392 0.79377 0.78319 1.19929 1.20986 1.20023 1.77336 1.19855 1.20003 0.96242 1.23232 0.89573 1.02275 1.03943 1.23106 0.98974 0.90082 1.03706 0.94763 0.90475 0.90644 0.90536 0.90397 0.95293 0.75588 0.82408 0.81385 0.93697 0.92480 0.92225 0.87119 0.87887 0.87089 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.91 60.06 0.53 0.71 16 2 N -0.49 -4.97 5.14 -236.71 -1.22 -6.19 16 3 C 0.01 0.12 9.39 60.06 0.56 0.69 16 4 C 0.00 -0.03 1.73 -132.71 -0.23 -0.25 16 5 C 0.54 8.08 5.57 -10.99 -0.06 8.02 16 6 O -0.51 -9.10 13.79 5.54 0.08 -9.02 16 7 N -0.63 -10.20 5.25 -11.13 -0.06 -10.25 16 8 C 0.25 5.17 8.10 -154.39 -1.25 3.92 16 9 C -0.29 -5.78 9.61 -39.83 -0.38 -6.16 16 10 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 11 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 12 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 13 C -0.53 -14.74 9.23 -34.44 -0.32 -15.05 16 14 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.90 -25.26 13.29 55.43 0.74 -24.53 16 17 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.30 -7.05 12.42 31.44 0.39 -6.66 16 22 C -0.15 -1.37 9.50 -26.73 -0.25 -1.62 16 23 C -0.12 -1.15 9.98 -26.70 -0.27 -1.42 16 24 H 0.03 0.42 7.20 -51.93 -0.37 0.04 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.08 0.55 7.14 -51.93 -0.37 0.18 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.27 5.75 -51.93 -0.30 -0.03 16 30 H 0.41 5.79 6.38 -40.82 -0.26 5.53 16 31 H 0.16 3.08 5.93 -52.48 -0.31 2.77 16 32 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.11 0.80 7.53 -51.93 -0.39 0.40 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 1.10 7.95 -51.93 -0.41 0.68 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -31.76 328.55 -7.70 -39.46 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.34 Total: 5.77 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.99 Total: -2.16 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.38 Total: -55.26 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.76 -7.70 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597262316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.464 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds