Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00039 * 2 1 4 4 C 1.46897 * 111.00054 * 123.95354 * 2 1 3 5 5 C 1.50703 * 115.55115 * 321.44888 * 4 2 1 6 6 O 1.21298 * 119.99711 * 117.15623 * 5 4 2 7 7 N 1.34773 * 120.00120 * 297.16615 * 5 4 2 8 8 C 1.40151 * 120.00045 * 185.09260 * 7 5 4 9 9 C 1.40411 * 125.97621 * 359.97438 * 8 7 5 10 10 C 1.35238 * 107.87308 * 179.97438 * 9 8 7 11 11 N 1.34976 * 107.85811 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.97188 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46934 * 125.00003 * 12 11 10 14 14 H 1.08002 * 119.99591 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99895 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99866 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46926 * 59.99958 * 17 15 13 19 19 H 1.48493 * 109.46990 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47083 * 300.00284 * 17 15 13 21 21 N 1.31224 * 125.97521 * 179.68347 * 8 7 5 22 22 C 1.53006 * 117.50071 * 175.77855 * 4 2 1 23 23 C 1.52993 * 60.03134 * 252.47592 * 22 4 2 24 24 H 1.09000 * 109.47224 * 301.92391 * 1 2 3 25 25 H 1.08998 * 109.47478 * 61.92253 * 1 2 3 26 26 H 1.08999 * 109.47431 * 181.92391 * 1 2 3 27 27 H 1.09004 * 109.47236 * 183.95491 * 3 2 1 28 28 H 1.09004 * 109.46792 * 303.95184 * 3 2 1 29 29 H 1.08992 * 109.47241 * 63.95638 * 3 2 1 30 30 H 0.96997 * 119.99794 * 5.08324 * 7 5 4 31 31 H 1.08005 * 126.06364 * 359.97157 * 9 8 7 32 32 H 1.07999 * 126.06911 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.46964 * 244.99713 * 12 11 10 34 34 H 1.08994 * 109.47163 * 5.00213 * 12 11 10 35 35 H 0.97000 * 120.00197 * 179.97438 * 16 15 13 36 36 H 1.09002 * 117.49726 * 359.97438 * 22 4 2 37 37 H 1.09000 * 117.49788 * 144.96945 * 22 4 2 38 38 H 1.09001 * 117.50085 * 107.50327 * 23 22 4 39 39 H 1.09000 * 117.49879 * 252.51898 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.2357 -0.6148 2.4303 6 8 0.6921 -1.5771 2.9303 7 7 1.1600 0.5894 3.0306 8 6 0.5459 0.7099 4.2847 9 6 -0.0298 -0.3351 5.0250 10 6 -0.5133 0.1880 6.1746 11 7 -0.2565 1.5130 6.1666 12 6 -0.6103 2.4645 7.2229 13 6 0.6263 3.2000 7.6713 14 1 1.5803 2.9802 7.2154 15 6 0.5396 4.1533 8.6636 16 7 -0.6221 4.4205 9.2191 17 14 2.0725 5.0644 9.2200 18 1 2.6581 5.7970 8.0686 19 1 1.7139 6.0289 10.2905 20 1 3.0644 4.0909 9.7433 21 7 0.4131 1.8181 4.9747 22 6 3.5122 -0.9463 1.2265 23 6 2.6230 -2.1305 0.8421 24 1 -0.3634 0.5434 0.8722 25 1 -0.3634 0.4837 -0.9067 26 1 -0.3634 -1.0271 0.0345 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9232 30 1 1.5307 1.3727 2.5949 31 1 -0.0780 -1.3727 4.7289 32 1 -1.0157 -0.3577 6.9596 33 1 -1.3388 3.1789 6.8392 34 1 -1.0394 1.9263 8.0679 35 1 -0.6831 5.0909 9.9174 36 1 4.1194 -0.4969 0.4407 37 1 3.9605 -0.9552 2.2200 38 1 2.6452 -2.4602 -0.1966 39 1 2.4861 -2.9183 1.5828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597262316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 66.271365 kcal Electronic energy + Delta-G solvation = -21535.531454 eV Core-core repulsion = 18287.653694 eV Total energy + Delta-G solvation = -3247.877759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.40243 -41.28128 -38.57440 -36.44281 -35.43269 -35.09205 -32.82121 -31.03527 -28.80152 -28.64704 -26.38219 -25.13995 -24.06296 -23.25748 -22.49400 -21.46192 -20.44410 -18.72373 -18.43235 -18.18396 -17.14296 -17.13922 -16.35297 -16.22940 -15.75687 -15.64955 -15.36047 -15.04139 -14.67992 -14.38088 -14.26283 -13.91409 -13.70094 -13.27598 -13.01641 -12.94617 -12.74595 -12.71206 -12.32207 -12.30749 -12.15243 -11.89855 -11.67741 -11.47956 -11.43646 -10.94694 -10.74623 -9.84704 -9.58285 -9.21127 -8.35759 -6.50164 0.79714 1.22343 1.32416 1.37497 1.38946 1.48219 2.08272 2.20987 2.35960 2.60564 2.70900 2.96392 3.32549 3.84437 3.89180 3.93032 4.12585 4.17721 4.31115 4.52368 4.58387 4.60007 4.69169 4.71081 4.82269 4.86750 4.90773 4.95129 4.97670 5.02475 5.06161 5.22781 5.53288 5.73883 5.78064 5.82435 5.83243 6.12410 6.22531 6.60559 6.86728 6.98144 7.19969 8.72071 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.003862 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.886647 B = 7248.608238 C = 7599.037225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.485 5.485 3 C 0.010 3.990 4 C -0.017 4.017 5 C 0.537 3.463 6 O -0.539 6.539 7 N -0.623 5.623 8 C 0.259 3.741 9 C -0.295 4.295 10 C 0.059 3.941 11 N -0.341 5.341 12 C 0.272 3.728 13 C -0.550 4.550 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.920 5.920 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.272 1.272 20 H -0.269 1.269 21 N -0.344 5.344 22 C -0.134 4.134 23 C -0.114 4.114 24 H 0.010 0.990 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.016 0.984 30 H 0.416 0.584 31 H 0.166 0.834 32 H 0.204 0.796 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.273 0.727 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -9.470 -18.072 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.208 5.208 3 C -0.138 4.138 4 C -0.111 4.111 5 C 0.322 3.678 6 O -0.413 6.413 7 N -0.274 5.274 8 C 0.005 3.995 9 C -0.326 4.326 10 C -0.090 4.090 11 N -0.123 5.123 12 C 0.153 3.847 13 C -0.588 4.588 14 H 0.070 0.930 15 C -0.181 4.181 16 N -0.559 5.559 17 Si 0.795 3.205 18 H -0.198 1.198 19 H -0.197 1.197 20 H -0.194 1.194 21 N -0.175 5.175 22 C -0.172 4.172 23 C -0.153 4.153 24 H 0.029 0.971 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.255 0.745 31 H 0.183 0.817 32 H 0.220 0.780 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.220 -8.941 -17.898 20.951 hybrid contribution -0.146 0.712 1.267 1.461 sum 6.074 -8.229 -16.630 19.524 Atomic orbital electron populations 1.22522 0.86595 1.02465 1.01482 1.62198 1.08307 1.14664 1.35630 1.22742 1.02661 0.87352 1.01035 1.21755 0.97615 1.05323 0.86449 1.21141 0.79772 0.81005 0.85851 1.90608 1.45473 1.39409 1.65801 1.43037 1.56864 1.11978 1.15513 1.19539 0.98363 0.92982 0.88588 1.21681 1.13406 1.01021 0.96484 1.23184 1.00797 0.84692 1.00296 1.48878 1.41707 1.07438 1.14251 1.19371 0.96246 0.86932 0.82121 1.21355 0.94207 1.22398 1.20861 0.92973 1.25737 0.99878 0.96916 0.95527 1.69984 1.25583 1.33687 1.26625 0.85401 0.78744 0.78279 0.78029 1.19812 1.19696 1.19435 1.77257 1.21714 1.21614 0.96941 1.23366 0.88015 1.01173 1.04605 1.23207 0.98161 0.89319 1.04564 0.97112 0.88307 0.91393 0.88767 0.88884 0.96541 0.74527 0.81708 0.77954 0.96046 0.92221 0.91759 0.84523 0.88306 0.85156 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.91 127.69 1.14 1.48 16 2 N -0.48 -8.71 5.14 -902.83 -4.64 -13.35 16 3 C 0.01 0.14 9.39 127.69 1.20 1.34 16 4 C -0.02 -0.36 1.73 2.81 0.00 -0.36 16 5 C 0.54 15.92 5.57 87.66 0.49 16.41 16 6 O -0.54 -19.23 13.79 -3.08 -0.04 -19.27 16 7 N -0.62 -20.22 5.25 -307.51 -1.61 -21.84 16 8 C 0.26 10.72 8.10 133.33 1.08 11.80 16 9 C -0.29 -11.85 9.61 22.11 0.21 -11.64 16 10 C 0.06 2.37 11.44 83.52 0.96 3.32 16 11 N -0.34 -16.23 3.67 -351.83 -1.29 -17.52 16 12 C 0.27 14.20 6.26 85.63 0.54 14.74 16 13 C -0.55 -31.14 9.23 25.60 0.24 -30.90 16 14 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 15 C 0.02 1.10 5.46 84.65 0.46 1.57 16 16 N -0.92 -52.14 13.29 21.45 0.28 -51.86 16 17 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 21 N -0.34 -16.36 12.42 -54.45 -0.68 -17.04 16 22 C -0.13 -2.04 9.50 30.59 0.29 -1.75 16 23 C -0.11 -1.93 9.98 30.62 0.31 -1.63 16 24 H 0.01 0.25 7.20 -2.39 -0.02 0.24 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 27 H 0.09 1.05 7.14 -2.38 -0.02 1.03 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.02 0.28 5.75 -2.39 -0.01 0.27 16 30 H 0.42 11.78 6.38 -92.71 -0.59 11.19 16 31 H 0.17 6.41 5.93 -2.91 -0.02 6.39 16 32 H 0.20 6.37 8.06 -2.91 -0.02 6.35 16 33 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 3.03 8.07 -2.39 -0.02 3.01 16 35 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.14 1.40 7.53 -2.39 -0.02 1.38 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.86 7.95 -2.39 -0.02 1.84 16 Total: -1.00 -68.82 328.55 1.43 -67.39 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.47 Total: 23.65 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.91 Total: 4.38 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.94 Total: -121.61 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.82 1.43 -67.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597262316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.666 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds