Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99598 * 2 1 4 4 C 1.50703 * 109.46809 * 269.99430 * 3 2 1 5 5 N 1.30497 * 125.65452 * 274.69858 * 4 3 2 6 6 C 1.34123 * 109.25961 * 179.89532 * 5 4 3 7 7 C 1.34672 * 108.01967 * 0.36040 * 6 5 4 8 8 N 1.35051 * 125.64820 * 94.99789 * 4 3 2 9 9 H 0.96995 * 126.39257 * 359.97438 * 8 4 3 10 10 C 1.34773 * 120.00328 * 179.97438 * 2 1 3 11 11 O 1.21586 * 120.00066 * 184.83718 * 10 2 1 12 12 N 1.34776 * 119.99764 * 4.83392 * 10 2 1 13 13 C 1.46501 * 119.99722 * 185.02670 * 12 10 2 14 14 C 1.53001 * 109.46992 * 184.99453 * 13 12 10 15 15 C 1.50699 * 115.54862 * 54.05967 * 14 13 12 16 16 H 1.08004 * 120.00083 * 215.58834 * 15 14 13 17 17 C 1.37878 * 120.00069 * 35.31190 * 15 14 13 18 18 N 1.31519 * 120.00301 * 355.90332 * 17 15 14 19 19 Si 1.86799 * 120.00171 * 175.90089 * 17 15 14 20 20 H 1.48497 * 109.47135 * 59.99968 * 19 17 15 21 21 H 1.48506 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47127 * 300.00128 * 19 17 15 23 23 C 1.52998 * 117.49972 * 199.72430 * 14 13 12 24 24 C 1.52997 * 117.50023 * 268.38916 * 14 13 12 25 25 H 1.09004 * 109.47253 * 274.16755 * 1 2 3 26 26 H 1.09002 * 109.47527 * 34.17178 * 1 2 3 27 27 H 1.09006 * 109.47309 * 154.16980 * 1 2 3 28 28 H 1.09001 * 109.47240 * 29.99342 * 3 2 1 29 29 H 1.08995 * 109.47453 * 150.00070 * 3 2 1 30 30 H 1.08004 * 125.98964 * 180.11704 * 6 5 4 31 31 H 1.07999 * 126.58772 * 179.81678 * 7 6 5 32 32 H 0.96994 * 120.00070 * 5.03502 * 12 10 2 33 33 H 1.09001 * 109.47328 * 64.99563 * 13 12 10 34 34 H 1.09002 * 109.47169 * 304.99884 * 13 12 10 35 35 H 0.96992 * 120.00441 * 184.99633 * 18 17 15 36 36 H 1.08995 * 117.50216 * 215.00294 * 23 14 13 37 37 H 1.09004 * 117.49652 * 0.03118 * 23 14 13 38 38 H 1.08994 * 117.49972 * 359.97438 * 24 14 13 39 39 H 1.09001 * 117.49811 * 144.97356 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4209 5 7 3.4497 1.3240 -2.1669 6 6 3.3508 1.9075 -3.3705 7 6 2.2508 2.6844 -3.3677 8 7 1.6780 2.5555 -2.1312 9 1 0.8698 2.9941 -1.8226 10 6 2.1389 -1.1671 0.0005 11 8 3.3515 -1.1689 0.0893 12 7 1.4686 -2.3323 -0.0973 13 6 2.1889 -3.6032 0.0138 14 6 1.2252 -4.7607 -0.2551 15 6 0.4670 -4.6865 -1.5553 16 1 -0.5519 -5.0411 -1.6074 17 6 1.0720 -4.1607 -2.6771 18 7 2.2813 -3.6503 -2.5940 19 14 0.1743 -4.1732 -4.3152 20 1 -1.0885 -3.4013 -4.1936 21 1 1.0346 -3.5551 -5.3560 22 1 -0.1367 -5.5738 -4.6985 23 6 1.6289 -6.1477 0.2491 24 6 0.5066 -5.3757 0.9476 25 1 -0.3634 0.0747 1.0250 26 1 -0.3634 0.8502 -0.5772 27 1 -0.3634 -0.9250 -0.4478 28 1 1.6082 2.0285 0.5137 29 1 3.1498 1.1386 0.5138 30 1 4.0357 1.7800 -4.1958 31 1 1.8896 3.2919 -4.1844 32 1 0.5094 -2.3294 -0.2414 33 1 2.6020 -3.7001 1.0178 34 1 2.9982 -3.6271 -0.7159 35 1 2.6783 -3.2155 -3.3648 36 1 1.3460 -7.0065 -0.3596 37 1 2.5808 -6.2354 0.7728 38 1 0.7208 -4.9559 1.9304 39 1 -0.5146 -5.7262 0.7984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601605687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 50.878973 kcal Electronic energy + Delta-G solvation = -22296.726672 eV Core-core repulsion = 19048.181448 eV Total energy + Delta-G solvation = -3248.545224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91949 -40.81598 -38.55381 -36.42278 -34.75483 -34.09338 -33.41712 -31.47383 -28.21365 -27.94523 -27.37414 -25.71642 -22.94615 -22.51620 -21.69727 -21.08789 -20.66451 -19.32449 -18.67534 -17.90962 -17.23657 -16.74847 -16.46434 -15.84158 -15.54077 -15.21902 -15.06051 -14.79820 -14.54816 -14.34141 -14.22432 -13.67830 -13.52687 -13.33490 -13.24552 -12.88966 -12.76034 -12.58632 -12.31593 -12.00633 -11.49878 -11.01445 -10.95411 -10.84461 -10.82653 -10.63389 -10.13562 -9.86057 -9.42379 -9.25052 -7.88775 -6.17325 1.03187 1.38107 1.42396 1.49152 1.86113 2.24575 2.39642 2.42228 2.55938 3.04049 3.41350 3.58577 3.70148 4.09877 4.25457 4.32331 4.36834 4.46709 4.57828 4.63165 4.72783 4.78952 4.80527 4.85880 4.90728 4.98916 5.13017 5.15886 5.32134 5.55961 5.62326 5.67024 5.82349 5.99121 6.06349 6.15768 6.40290 6.59880 6.84158 7.28354 7.37209 7.47788 7.94596 8.93438 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.006454 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.861048 B = 4337.171557 C = 5242.835633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.633 5.633 3 C 0.221 3.779 4 C 0.175 3.825 5 N -0.524 5.524 6 C -0.078 4.078 7 C -0.028 4.028 8 N -0.546 5.546 9 H 0.436 0.564 10 C 0.697 3.303 11 O -0.634 6.634 12 N -0.696 5.696 13 C 0.196 3.804 14 C 0.006 3.994 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.033 3.967 18 N -0.881 5.881 19 Si 0.945 3.055 20 H -0.265 1.265 21 H -0.300 1.300 22 H -0.273 1.273 23 C -0.202 4.202 24 C -0.181 4.181 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.220 0.780 32 H 0.397 0.603 33 H 0.011 0.989 34 H 0.070 0.930 35 H 0.250 0.750 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 14.755 3.030 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.371 5.371 3 C 0.095 3.905 4 C -0.091 4.091 5 N -0.244 5.244 6 C -0.225 4.225 7 C -0.164 4.164 8 N -0.152 5.152 9 H 0.278 0.722 10 C 0.398 3.602 11 O -0.515 6.515 12 N -0.349 5.349 13 C 0.071 3.929 14 C 0.006 3.994 15 C -0.541 4.541 16 H 0.078 0.922 17 C -0.169 4.169 18 N -0.517 5.517 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.227 1.227 22 H -0.198 1.198 23 C -0.240 4.240 24 C -0.218 4.218 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.185 0.815 31 H 0.236 0.764 32 H 0.234 0.766 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.986 14.196 3.222 16.146 hybrid contribution -1.191 0.276 -1.551 1.974 sum -8.176 14.471 1.671 16.705 Atomic orbital electron populations 1.21923 0.77700 1.03274 1.03435 1.47001 1.07351 1.03667 1.79094 1.19622 0.99337 0.84878 0.86636 1.24069 0.90734 0.95968 0.98354 1.70294 1.24530 1.24597 1.04997 1.22755 1.01497 1.01693 0.96592 1.23268 0.97253 1.05880 0.89991 1.43209 1.23957 1.36223 1.11760 0.72218 1.16124 0.84845 0.81447 0.77800 1.90827 1.14031 1.86791 1.59824 1.44739 1.11134 1.03819 1.75221 1.20511 0.95363 0.81128 0.95938 1.19278 0.97132 0.90102 0.92934 1.20619 0.98612 1.42152 0.92675 0.92183 1.25627 0.95118 0.94781 1.01354 1.70102 1.15180 1.36383 1.30075 0.85816 0.78515 0.78310 0.80166 1.18956 1.22652 1.19832 1.22957 0.98124 0.97772 1.05170 1.22929 0.96328 1.05934 0.96584 0.89775 0.89172 0.92624 0.83807 0.89685 0.81482 0.76370 0.76601 0.97132 0.91236 0.94032 0.90469 0.90775 0.89631 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 10.44 127.77 1.33 3.11 16 2 N -0.63 -20.63 2.86 -869.30 -2.48 -23.11 16 3 C 0.22 6.11 6.09 85.63 0.52 6.64 16 4 C 0.17 5.39 7.73 138.13 1.07 6.46 16 5 N -0.52 -21.11 11.25 -188.12 -2.12 -23.22 16 6 C -0.08 -2.50 11.87 83.52 0.99 -1.51 16 7 C -0.03 -0.62 12.04 83.09 1.00 0.38 16 8 N -0.55 -11.20 6.15 -186.27 -1.15 -12.35 16 9 H 0.44 4.70 8.96 -92.71 -0.83 3.87 16 10 C 0.70 31.62 8.27 179.06 1.48 33.10 16 11 O -0.63 -34.82 15.88 -3.99 -0.06 -34.88 16 12 N -0.70 -31.70 4.90 -478.53 -2.34 -34.05 16 13 C 0.20 9.92 4.62 86.38 0.40 10.32 16 14 C 0.01 0.30 2.04 -52.93 -0.11 0.19 16 15 C -0.50 -25.88 8.43 25.60 0.22 -25.66 16 16 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 17 C 0.03 1.78 5.31 84.65 0.45 2.23 16 18 N -0.88 -51.23 10.11 21.45 0.22 -51.01 16 19 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.20 -8.83 9.96 30.62 0.30 -8.53 16 24 C -0.18 -7.21 9.92 30.62 0.30 -6.91 16 25 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 27 H 0.06 1.49 5.94 -2.38 -0.01 1.48 16 28 H 0.14 2.16 8.07 -2.39 -0.02 2.15 16 29 H 0.08 2.87 7.36 -2.39 -0.02 2.85 16 30 H 0.17 4.89 8.06 -2.91 -0.02 4.86 16 31 H 0.22 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.40 16.71 5.68 -92.71 -0.53 16.18 16 33 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 34 H 0.07 4.21 5.90 -2.39 -0.01 4.19 16 35 H 0.25 14.83 8.32 -92.71 -0.77 14.06 16 36 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -79.86 329.78 1.77 -78.09 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.28 Total: 35.82 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.96 Total: 19.81 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -7.87 Total: -143.74 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.06 Total: -34.88 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -79.86 1.77 -78.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601605687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.964 kcal (2) G-P(sol) polarization free energy of solvation -79.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds