Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99743 * 2 1 4 4 C 1.39025 * 119.99711 * 179.97438 * 2 1 3 5 5 C 1.38870 * 119.67251 * 4.99941 * 4 2 1 6 6 C 1.39058 * 119.01065 * 179.97438 * 5 4 2 7 7 N 1.39553 * 120.81661 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00234 * 145.05858 * 7 6 5 9 9 O 1.21578 * 119.99539 * 4.67652 * 8 7 6 10 10 N 1.34769 * 120.00320 * 184.67697 * 8 7 6 11 11 C 1.46499 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47545 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47645 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99335 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00140 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00310 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00149 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47183 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47559 * 120.00337 * 17 15 13 20 20 H 1.48510 * 109.47175 * 240.00234 * 17 15 13 21 21 C 1.39617 * 118.36389 * 0.02562 * 6 5 4 22 22 C 1.37771 * 119.24144 * 0.02562 * 21 6 5 23 23 N 1.32061 * 120.93108 * 359.72243 * 22 21 6 24 24 H 1.09001 * 109.46980 * 90.00209 * 1 2 3 25 25 H 1.09000 * 109.46895 * 330.00327 * 1 2 3 26 26 H 1.09005 * 109.47101 * 210.00297 * 1 2 3 27 27 H 1.08997 * 109.47717 * 89.99647 * 3 2 1 28 28 H 1.08999 * 109.46668 * 210.00176 * 3 2 1 29 29 H 1.09000 * 109.47078 * 329.99643 * 3 2 1 30 30 H 1.07997 * 120.49571 * 0.02562 * 5 4 2 31 31 H 0.97008 * 120.00328 * 325.06209 * 7 6 5 32 32 H 0.97000 * 120.00084 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.46931 * 300.00006 * 11 10 8 34 34 H 1.08995 * 109.47342 * 59.99842 * 11 10 8 35 35 H 1.09004 * 109.46969 * 299.99931 * 12 11 10 36 36 H 1.09004 * 109.46985 * 59.99711 * 12 11 10 37 37 H 0.97002 * 120.00603 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.37503 * 180.02562 * 21 6 5 39 39 H 1.08006 * 119.53504 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4628 -2.4004 -0.1041 6 6 2.1719 -3.5966 -0.1027 7 7 1.5094 -4.8205 -0.2053 8 6 2.0784 -5.8406 -0.8778 9 8 3.2040 -5.7230 -1.3220 10 7 1.3997 -6.9909 -1.0579 11 6 2.0185 -8.0998 -1.7884 12 6 1.0432 -9.2770 -1.8507 13 6 1.6794 -10.4175 -2.6026 14 1 2.6797 -10.3132 -2.9964 15 6 0.9851 -11.5942 -2.7870 16 7 -0.2328 -11.7213 -2.3070 17 14 1.7740 -13.0082 -3.7184 18 1 3.1385 -12.6147 -4.1527 19 1 1.8594 -14.1976 -2.8335 20 1 0.9511 -13.3361 -4.9104 21 6 3.5629 -3.5430 0.0050 22 6 4.1833 -2.3171 0.1062 23 7 3.4816 -1.1983 0.0970 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 2.3791 1.5835 1.0276 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0283 -0.5139 30 1 0.3860 -2.4018 -0.1861 31 1 0.6392 -4.9372 0.2073 32 1 0.5015 -7.0846 -0.7039 33 1 2.2627 -7.7769 -2.8005 34 1 2.9295 -8.4090 -1.2760 35 1 0.7986 -9.6001 -0.8387 36 1 0.1324 -8.9675 -2.3633 37 1 -0.7215 -12.5491 -2.4370 38 1 4.1458 -4.4522 0.0090 39 1 5.2591 -2.2701 0.1902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603142813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -4.992777 kcal Electronic energy + Delta-G solvation = -20523.685870 eV Core-core repulsion = 17272.717865 eV Total energy + Delta-G solvation = -3250.968005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.90412 -40.63538 -37.66108 -36.71057 -36.04311 -34.86224 -32.35201 -31.38587 -30.86619 -28.92703 -26.84896 -26.13958 -24.09089 -23.44424 -22.61884 -21.60382 -19.79789 -18.90860 -18.44376 -17.41794 -16.97087 -16.82332 -16.53725 -16.35693 -16.17567 -15.90559 -15.28671 -15.24087 -14.82376 -14.67582 -14.29725 -14.25260 -13.38599 -13.21851 -13.14008 -13.02610 -12.96742 -12.69001 -12.51333 -12.31339 -11.96480 -11.68036 -11.51638 -11.27886 -10.79306 -10.60944 -10.38725 -10.18052 -9.57755 -8.48692 -8.24078 -6.33830 0.26004 0.48322 1.41529 1.41774 1.47551 1.56514 2.01831 2.09271 2.41333 2.98457 3.11244 3.16596 3.66803 4.08547 4.13322 4.27410 4.35883 4.47135 4.50587 4.51418 4.56731 4.64683 4.83961 4.84941 4.86389 4.92835 5.04232 5.19446 5.22501 5.29525 5.49086 5.59540 5.74382 5.78638 5.91687 6.07436 6.16783 6.39852 6.79536 6.93269 7.22854 7.35477 7.40587 8.87965 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044432 B = 0.002648 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.024723 B =10571.417009 C =11010.745544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.623 5.623 3 C 0.102 3.898 4 C 0.402 3.598 5 C -0.268 4.268 6 C 0.240 3.760 7 N -0.669 5.669 8 C 0.700 3.300 9 O -0.611 6.611 10 N -0.723 5.723 11 C 0.159 3.841 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.251 4.251 22 C 0.160 3.840 23 N -0.571 5.571 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.426 0.574 32 H 0.410 0.590 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.128 0.872 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 24.090 7.414 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.337 5.337 3 C -0.041 4.041 4 C 0.167 3.833 5 C -0.295 4.295 6 C 0.136 3.864 7 N -0.318 5.318 8 C 0.400 3.600 9 O -0.490 6.490 10 N -0.377 5.377 11 C 0.035 3.965 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.277 4.277 22 C 0.003 3.997 23 N -0.291 5.291 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.175 0.825 31 H 0.265 0.735 32 H 0.246 0.754 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.113 24.945 7.047 25.922 hybrid contribution -0.938 -2.000 -0.189 2.217 sum -0.825 22.945 6.858 23.962 Atomic orbital electron populations 1.21904 0.76718 1.04290 1.02325 1.46439 1.06218 1.02543 1.78519 1.21583 0.97178 0.83786 1.01532 1.18287 0.88269 0.86409 0.90341 1.21170 1.01969 0.89525 1.16864 1.17618 0.91732 0.84377 0.92692 1.42322 1.23810 1.09579 1.56091 1.16069 0.84271 0.80603 0.79065 1.90896 1.19403 1.82215 1.56470 1.45223 1.19834 1.13049 1.59615 1.21159 0.96214 0.84758 0.94335 1.19143 0.94236 0.91529 0.96552 1.21486 1.01695 0.99325 1.35768 0.92254 1.25846 0.95381 1.01378 0.96566 1.70056 1.12179 1.27626 1.46745 0.85412 0.78789 0.78652 0.78288 1.18986 1.20269 1.20304 1.21994 0.94403 1.00490 1.10779 1.22548 1.00475 0.85725 0.90947 1.67234 1.06586 1.32033 1.23213 0.92401 0.88948 0.90616 0.93184 0.92145 0.89588 0.82485 0.73531 0.75365 0.93518 0.93301 0.97081 0.97151 0.92560 0.85388 0.80578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.05 127.77 1.28 2.19 16 2 N -0.62 -10.79 3.39 -754.12 -2.56 -13.35 16 3 C 0.10 1.44 10.42 127.77 1.33 2.77 16 4 C 0.40 9.39 7.36 132.96 0.98 10.37 16 5 C -0.27 -5.92 9.13 22.62 0.21 -5.71 16 6 C 0.24 6.40 6.33 38.44 0.24 6.65 16 7 N -0.67 -16.78 5.35 -316.77 -1.69 -18.47 16 8 C 0.70 23.57 8.42 179.06 1.51 25.08 16 9 O -0.61 -25.45 13.83 -3.96 -0.05 -25.51 16 10 N -0.72 -24.10 5.56 -478.55 -2.66 -26.76 16 11 C 0.16 6.67 5.61 86.38 0.48 7.16 16 12 C 0.02 1.13 5.09 29.85 0.15 1.28 16 13 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 15 C 0.01 0.39 5.46 84.65 0.46 0.85 16 16 N -0.93 -53.58 13.29 21.44 0.28 -53.29 16 17 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 C -0.25 -7.32 8.77 22.49 0.20 -7.12 16 22 C 0.16 4.07 11.16 84.55 0.94 5.02 16 23 N -0.57 -14.77 9.16 -193.52 -1.77 -16.54 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 25 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 26 H 0.08 0.68 6.38 -2.38 -0.02 0.67 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 29 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.16 2.53 6.26 -2.91 -0.02 2.52 16 31 H 0.43 7.30 8.84 -92.70 -0.82 6.48 16 32 H 0.41 11.23 8.49 -92.71 -0.79 10.44 16 33 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.13 4.26 6.31 -2.91 -0.02 4.24 16 39 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -71.30 331.20 1.07 -70.23 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.53 Total: 19.60 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 8.03 Total: 18.82 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.40 Total: -128.42 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -71.30 1.07 -70.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603142813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.234 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds