Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 C 1.53004 * 117.50206 * 243.62675 * 4 3 2 6 6 C 1.52998 * 117.50300 * 174.99858 * 4 3 2 7 7 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 8 8 O 1.21283 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99772 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46888 * 180.02562 * 9 7 2 11 11 C 1.35313 * 125.86595 * 124.71464 * 10 9 7 12 12 C 1.35353 * 106.17257 * 179.90342 * 11 10 9 13 13 C 1.50701 * 126.75022 * 180.12566 * 12 11 10 14 14 C 1.50704 * 109.46929 * 125.25175 * 13 12 11 15 15 H 1.07998 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00050 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99616 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00220 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46928 * 60.00057 * 18 16 14 20 20 H 1.48498 * 109.47238 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47540 * 300.00417 * 18 16 14 22 22 N 1.33772 * 106.49389 * 0.35454 * 12 11 10 23 23 N 1.28629 * 108.89139 * 359.77160 * 22 12 11 24 24 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 25 25 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 26 26 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 27 27 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 28 28 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 29 29 H 1.09004 * 115.54996 * 29.32971 * 4 3 2 30 30 H 1.08996 * 117.49643 * 359.97438 * 5 4 3 31 31 H 1.08996 * 117.50083 * 145.01847 * 5 4 3 32 32 H 1.08996 * 117.50347 * 214.97664 * 6 4 3 33 33 H 1.09001 * 117.49444 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47685 * 300.00183 * 9 7 2 35 35 H 1.08997 * 109.47517 * 60.00530 * 9 7 2 36 36 H 1.07992 * 126.91368 * 0.02562 * 11 10 9 37 37 H 1.09000 * 109.47155 * 245.24455 * 13 12 11 38 38 H 1.08991 * 109.47554 * 5.24778 * 13 12 11 39 39 H 0.97000 * 119.99608 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 1.8016 3.0145 1.9077 6 6 3.3102 2.9589 1.6580 7 6 2.1389 -1.1672 -0.0057 8 8 3.3517 -1.1673 -0.0062 9 6 1.3853 -2.4722 -0.0116 10 7 2.3374 -3.5858 -0.0166 11 6 2.3779 -4.5982 0.8803 12 6 3.4020 -5.3975 0.5005 13 6 3.8553 -6.6653 1.1776 14 6 3.8706 -7.7916 0.1764 15 1 3.5807 -7.6078 -0.8476 16 6 4.2548 -9.0566 0.5677 17 7 4.6083 -9.2802 1.8146 18 14 4.2731 -10.4529 -0.6731 19 1 5.2071 -10.1202 -1.7787 20 1 4.7211 -11.7018 -0.0062 21 1 2.9065 -10.6463 -1.2209 22 7 3.9359 -4.8381 -0.5910 23 7 3.2825 -3.7662 -0.8716 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 3.1499 1.1384 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 2.5440 0.9051 2.1715 30 1 1.1920 3.5580 1.1859 31 1 1.4645 3.0674 2.9428 32 1 3.9653 2.9754 2.5289 33 1 3.6923 3.4660 0.7720 34 1 0.7590 -2.5342 0.8783 35 1 0.7584 -2.5259 -0.9016 36 1 1.7234 -4.7409 1.7273 37 1 4.8582 -6.5236 1.5803 38 1 3.1693 -6.9094 1.9886 39 1 4.8789 -10.1701 2.0898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603209641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = 97.337805 kcal Electronic energy + Delta-G solvation = -20887.920996 eV Core-core repulsion = 17641.390379 eV Total energy + Delta-G solvation = -3246.530618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.48771 -40.18316 -37.74760 -35.50137 -34.40153 -33.06984 -30.98477 -29.60498 -27.99821 -27.24950 -26.02745 -23.36101 -22.75733 -21.95273 -21.06849 -20.50774 -19.24489 -17.65827 -17.16718 -16.36486 -16.26699 -16.06653 -15.45131 -14.83492 -14.56521 -14.40652 -14.00609 -13.66747 -13.51867 -13.09937 -12.92692 -12.75428 -12.42637 -12.06493 -11.96887 -11.87907 -11.63225 -10.94967 -10.86969 -10.67205 -10.59541 -10.38559 -10.20225 -10.03842 -9.63106 -9.36294 -9.21291 -9.09715 -8.37772 -8.05895 -5.94152 -3.94487 2.08514 2.28137 2.49994 2.90991 3.41849 3.43120 3.44727 3.48422 3.60467 3.99768 4.32867 4.47366 4.52230 4.55573 4.55924 4.62631 4.72957 4.86603 4.94859 5.18278 5.21701 5.25076 5.25522 5.38735 5.42593 5.52106 5.72514 5.77297 5.88746 6.11909 6.14432 6.34337 6.85843 7.17299 7.20588 7.58691 7.68859 7.83922 8.03715 8.42820 9.08716 9.39612 9.67912 11.17048 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041174 B = 0.002995 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.874479 B = 9347.822128 C = 9551.787789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.617 5.617 3 C 0.149 3.851 4 C -0.168 4.168 5 C -0.180 4.180 6 C -0.173 4.173 7 C 0.501 3.499 8 O -0.495 6.495 9 C 0.107 3.893 10 N -0.300 5.300 11 C -0.086 4.086 12 C 0.038 3.962 13 C 0.092 3.908 14 C -0.503 4.503 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.278 1.278 22 N -0.260 5.260 23 N -0.081 5.081 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.182 0.818 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.693 24.745 0.340 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.352 5.352 3 C 0.026 3.974 4 C -0.187 4.187 5 C -0.217 4.217 6 C -0.211 4.211 7 C 0.286 3.714 8 O -0.367 6.367 9 C -0.020 4.020 10 N -0.096 5.096 11 C -0.233 4.233 12 C -0.098 4.098 13 C 0.054 3.946 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.204 1.204 22 N -0.128 5.128 23 N -0.060 5.060 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.276 25.136 -0.804 27.985 hybrid contribution -0.853 -0.989 0.506 1.401 sum -13.129 24.146 -0.298 27.486 Atomic orbital electron populations 1.21905 0.79055 1.03595 1.02344 1.47752 1.07086 1.05559 1.74831 1.21050 0.97983 0.83948 0.94417 1.22735 1.05346 0.92139 0.98482 1.23063 0.95767 1.00528 1.02359 1.22933 0.93634 1.00920 1.03615 1.20511 0.88506 0.85057 0.77342 1.90858 1.13197 1.86426 1.46211 1.21651 0.90411 0.83233 1.06672 1.46608 1.23984 1.18166 1.20841 1.23303 1.06680 0.92730 1.00622 1.23005 0.93705 0.99199 0.93924 1.17726 0.97221 0.84946 0.94740 1.21018 1.44522 0.92647 0.95942 0.92307 1.24974 0.95376 0.98754 0.95341 1.69943 1.45759 1.22105 1.16088 0.86569 0.78444 0.81086 0.81413 1.20094 1.21354 1.20359 1.75100 1.21496 1.01619 1.14570 1.78297 0.98413 1.14487 1.14816 0.92046 0.90563 0.90820 0.89161 0.90163 0.87685 0.88761 0.88891 0.88609 0.88553 0.85393 0.86131 0.80104 0.94255 0.94552 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.29 59.85 0.62 0.92 16 2 N -0.62 -5.20 2.87 -181.57 -0.52 -5.72 16 3 C 0.15 1.21 5.73 -4.04 -0.02 1.19 16 4 C -0.17 -1.37 6.01 -90.62 -0.54 -1.92 16 5 C -0.18 -1.10 10.18 -26.73 -0.27 -1.37 16 6 C -0.17 -1.26 10.25 -26.73 -0.27 -1.53 16 7 C 0.50 6.29 7.69 -10.99 -0.08 6.20 16 8 O -0.50 -8.98 15.25 5.55 0.08 -8.89 16 9 C 0.11 1.17 5.49 -5.19 -0.03 1.14 16 10 N -0.30 -5.33 3.20 -62.44 -0.20 -5.53 16 11 C -0.09 -1.63 11.49 -17.05 -0.20 -1.83 16 12 C 0.04 0.91 6.44 -82.78 -0.53 0.38 16 13 C 0.09 2.49 5.55 -29.03 -0.16 2.33 16 14 C -0.50 -14.84 9.09 -34.44 -0.31 -15.15 16 15 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 N -0.26 -6.64 12.40 33.29 0.41 -6.23 16 23 N -0.08 -1.82 12.13 60.35 0.73 -1.09 16 24 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 0.20 7.89 -51.93 -0.41 -0.21 16 26 H 0.07 0.20 6.44 -51.93 -0.33 -0.13 16 27 H 0.09 0.95 7.42 -51.93 -0.39 0.56 16 28 H 0.08 0.45 7.62 -51.93 -0.40 0.05 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.45 8.03 -51.93 -0.42 0.04 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.13 0.87 8.03 -51.93 -0.42 0.45 16 35 H 0.12 0.97 7.40 -51.93 -0.38 0.59 16 36 H 0.18 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -38.40 337.58 -6.27 -44.67 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -5.67 Total: -5.26 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.91 Total: -8.09 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 1.16 Total: -44.97 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.40 -6.27 -44.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603209641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.010 kcal (2) G-P(sol) polarization free energy of solvation -38.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds