Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99823 * 2 1 4 4 C 1.46900 * 110.99961 * 123.94747 * 2 1 3 5 5 C 1.50703 * 112.85172 * 301.64772 * 4 2 1 6 6 O 1.21305 * 119.99705 * 349.56415 * 5 4 2 7 7 N 1.34773 * 119.99779 * 169.56765 * 5 4 2 8 8 C 1.40593 * 119.99750 * 174.90165 * 7 5 4 9 9 C 1.40654 * 126.08391 * 359.97183 * 8 7 5 10 10 N 1.30907 * 108.39164 * 180.02562 * 9 8 7 11 11 N 1.40071 * 108.40453 * 0.02562 * 10 9 8 12 12 C 1.37318 * 126.06958 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00241 * 180.02562 * 12 11 10 14 14 C 1.38991 * 119.99948 * 0.03118 * 12 11 10 15 15 N 1.31292 * 120.00225 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99965 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46995 * 59.99687 * 16 14 12 18 18 H 1.48495 * 109.46994 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.46981 * 299.99801 * 16 14 12 20 20 C 1.35686 * 126.08740 * 180.28790 * 8 7 5 21 21 C 1.53782 * 113.68807 * 72.91324 * 4 2 1 22 22 C 1.53783 * 87.07842 * 89.12928 * 21 4 2 23 23 C 1.53772 * 87.08345 * 25.43255 * 22 21 4 24 24 H 1.08998 * 109.47482 * 293.06412 * 1 2 3 25 25 H 1.09000 * 109.47143 * 53.06721 * 1 2 3 26 26 H 1.08999 * 109.47023 * 173.05902 * 1 2 3 27 27 H 1.09002 * 109.47303 * 183.95177 * 3 2 1 28 28 H 1.09001 * 109.47171 * 303.94766 * 3 2 1 29 29 H 1.09001 * 109.47865 * 63.94984 * 3 2 1 30 30 H 0.96999 * 120.00395 * 354.89784 * 7 5 4 31 31 H 1.08007 * 125.80374 * 0.02562 * 9 8 7 32 32 H 0.96997 * 120.00037 * 180.02562 * 15 14 12 33 33 H 1.08004 * 126.23733 * 359.97438 * 20 8 7 34 34 H 1.09002 * 113.61146 * 203.67351 * 21 4 2 35 35 H 1.09001 * 113.61712 * 334.57834 * 21 4 2 36 36 H 1.09005 * 113.61266 * 270.88211 * 22 21 4 37 37 H 1.09001 * 113.69192 * 139.99385 * 22 21 4 38 38 H 1.09002 * 113.61404 * 220.02465 * 23 22 21 39 39 H 1.08996 * 113.69610 * 89.12746 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.5249 -0.2361 2.4677 6 8 0.9490 0.8300 2.5266 7 7 1.7440 -0.9467 3.5918 8 6 1.4020 -0.4054 4.8434 9 6 0.8279 0.8584 5.0705 10 7 0.6554 1.0081 6.3595 11 7 1.1110 -0.1491 7.0040 12 6 1.1002 -0.3779 8.3579 13 1 1.4781 -1.3102 8.7511 14 6 0.6027 0.5901 9.2224 15 7 0.1437 1.7236 8.7446 16 14 0.5873 0.2785 11.0642 17 1 1.9759 0.0523 11.5396 18 1 0.0119 1.4570 11.7608 19 1 -0.2375 -0.9212 11.3563 20 6 1.5724 -1.0067 6.0478 21 6 1.8305 -2.2874 0.9875 22 6 3.1991 -2.2873 0.2860 23 6 3.5134 -1.0029 1.0711 24 1 -0.3634 0.4026 0.9455 25 1 -0.3633 0.6175 -0.8215 26 1 -0.3633 -1.0201 -0.1242 27 1 3.0827 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8725 0.9232 30 1 2.1376 -1.8316 3.5372 31 1 0.5729 1.5823 4.3106 32 1 -0.2031 2.3993 9.3479 33 1 1.9942 -1.9863 6.2183 34 1 1.8269 -2.8220 1.9374 35 1 1.0057 -2.5750 0.3355 36 1 3.1373 -2.1361 -0.7917 37 1 3.8315 -3.1319 0.5594 38 1 4.0471 -0.2535 0.4866 39 1 3.9699 -1.1849 2.0440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763030154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = 87.319892 kcal Electronic energy + Delta-G solvation = -22063.769409 eV Core-core repulsion = 18816.804383 eV Total energy + Delta-G solvation = -3246.965027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83854 -39.42248 -37.39312 -35.33434 -33.85413 -33.00989 -30.25350 -28.11284 -27.84583 -26.34373 -25.28519 -24.75317 -22.89321 -21.29637 -20.67484 -19.53102 -18.67141 -17.36059 -17.12242 -16.02965 -15.46903 -15.10415 -14.87790 -14.49309 -14.41922 -14.06556 -13.92963 -13.33232 -13.19809 -12.91636 -12.49696 -11.91906 -11.87681 -11.72390 -11.67111 -11.53243 -11.45815 -11.25987 -11.22317 -10.93900 -10.67397 -10.56470 -10.30966 -10.07487 -9.60965 -9.15442 -8.82208 -8.06536 -7.93679 -6.69579 -6.56041 -4.23222 2.76501 3.01608 3.04102 3.08293 3.60034 3.65525 3.85316 3.88502 4.36002 4.51304 4.62278 4.73483 4.74280 5.01860 5.05552 5.18280 5.36796 5.55874 5.61954 5.64832 5.71671 5.79568 5.86941 5.92273 6.05459 6.17719 6.19954 6.23544 6.24859 6.45904 6.88514 6.93688 7.01517 7.04083 7.14977 7.25154 7.85247 8.17689 8.28987 8.63198 8.86344 9.37563 9.66701 10.39954 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037270 B = 0.003982 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.094306 B = 7030.524811 C = 7468.524793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.498 5.498 3 C 0.008 3.992 4 C 0.066 3.934 5 C 0.486 3.514 6 O -0.537 6.537 7 N -0.620 5.620 8 C -0.060 4.060 9 C -0.033 4.033 10 N -0.261 5.261 11 N -0.142 5.142 12 C -0.324 4.324 13 H 0.116 0.884 14 C 0.047 3.953 15 N -0.771 5.771 16 Si 0.934 3.066 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.267 1.267 20 C -0.085 4.085 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.174 0.826 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -7.480 -13.198 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.221 5.221 3 C -0.140 4.140 4 C -0.029 4.029 5 C 0.271 3.729 6 O -0.415 6.415 7 N -0.263 5.263 8 C -0.166 4.166 9 C -0.209 4.209 10 N -0.092 5.092 11 N 0.090 4.910 12 C -0.456 4.456 13 H 0.133 0.867 14 C -0.170 4.170 15 N -0.397 5.397 16 Si 0.758 3.242 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.236 4.236 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.190 0.810 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.155 -5.922 -12.606 14.534 hybrid contribution 0.183 -0.756 0.908 1.196 sum 4.338 -6.678 -11.698 14.151 Atomic orbital electron populations 1.22518 0.87082 1.01782 1.02423 1.62373 1.08559 1.14421 1.36697 1.22560 1.00013 0.88843 1.02575 1.22365 0.97557 0.95359 0.87572 1.21240 0.80596 0.85420 0.85637 1.90514 1.41972 1.22822 1.86200 1.42672 1.60529 1.18787 1.04343 1.17315 1.18127 0.97714 0.83439 1.24055 1.05498 0.96523 0.94774 1.78250 1.22699 1.04475 1.03775 1.44529 1.32852 1.08745 1.04835 1.19826 1.43858 1.04536 0.77419 0.86684 1.25636 0.95337 0.94738 1.01333 1.70206 1.29029 1.04412 1.36062 0.85900 0.79264 0.78616 0.80397 1.19154 1.20122 1.19154 1.21262 1.15390 0.98937 0.88012 1.23011 0.99234 0.92655 1.01384 1.22714 0.96077 0.97093 1.00262 1.23010 0.92790 0.98808 1.01401 0.92584 0.91608 0.91975 0.91955 0.91778 0.91979 0.77150 0.80961 0.91419 0.83778 0.89566 0.90252 0.89293 0.91346 0.90303 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.18 60.06 0.55 0.68 16 2 N -0.50 -6.57 4.81 -235.80 -1.13 -7.70 16 3 C 0.01 0.10 9.16 60.06 0.55 0.65 16 4 C 0.07 0.87 0.43 -131.94 -0.06 0.81 16 5 C 0.49 8.58 6.40 -10.99 -0.07 8.51 16 6 O -0.54 -11.36 9.53 5.54 0.05 -11.30 16 7 N -0.62 -11.15 5.26 -10.00 -0.05 -11.20 16 8 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 9 C -0.03 -0.88 10.85 -17.03 -0.18 -1.07 16 10 N -0.26 -7.67 10.40 30.80 0.32 -7.35 16 11 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 12 C -0.32 -8.63 10.25 -14.82 -0.15 -8.78 16 13 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 14 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 15 N -0.77 -21.69 11.81 55.50 0.66 -21.04 16 16 Si 0.93 18.97 29.55 -169.99 -5.02 13.95 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.09 -2.02 11.49 -16.39 -0.19 -2.21 16 21 C -0.12 -1.31 7.09 -25.92 -0.18 -1.49 16 22 C -0.12 -1.12 7.99 -25.92 -0.21 -1.33 16 23 C -0.12 -1.34 7.14 -25.92 -0.19 -1.52 16 24 H 0.06 0.92 5.82 -51.93 -0.30 0.62 16 25 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.06 0.74 7.16 -51.93 -0.37 0.37 16 27 H 0.06 0.75 6.62 -51.93 -0.34 0.40 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.06 1.02 5.79 -51.93 -0.30 0.71 16 30 H 0.39 5.61 7.18 -40.82 -0.29 5.32 16 31 H 0.17 4.58 5.94 -52.48 -0.31 4.27 16 32 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.14 2.85 8.06 -52.48 -0.42 2.42 16 34 H 0.09 0.84 6.53 -51.93 -0.34 0.50 16 35 H 0.08 0.81 7.19 -51.93 -0.37 0.44 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.85 6.66 -51.93 -0.35 0.50 16 39 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -32.68 312.36 -6.37 -39.05 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.05 Total: 11.47 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.80 Total: -6.61 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.25 Total: -51.26 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.05 Total: -11.30 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.68 -6.37 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763030154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.368 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds