Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 110.99823 * 2 1 4 4 C 1.46900 * 110.99961 * 123.94747 * 2 1 3 5 5 C 1.50703 * 112.85172 * 301.64772 * 4 2 1 6 6 O 1.21305 * 119.99705 * 349.56415 * 5 4 2 7 7 N 1.34773 * 119.99779 * 169.56765 * 5 4 2 8 8 C 1.40593 * 119.99750 * 174.90165 * 7 5 4 9 9 C 1.40654 * 126.08391 * 359.97183 * 8 7 5 10 10 N 1.30907 * 108.39164 * 180.02562 * 9 8 7 11 11 N 1.40071 * 108.40453 * 0.02562 * 10 9 8 12 12 C 1.37318 * 126.06958 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00241 * 180.02562 * 12 11 10 14 14 C 1.38991 * 119.99948 * 0.03118 * 12 11 10 15 15 N 1.31292 * 120.00225 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99965 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46995 * 59.99687 * 16 14 12 18 18 H 1.48495 * 109.46994 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.46981 * 299.99801 * 16 14 12 20 20 C 1.35686 * 126.08740 * 180.28790 * 8 7 5 21 21 C 1.53782 * 113.68807 * 72.91324 * 4 2 1 22 22 C 1.53783 * 87.07842 * 89.12928 * 21 4 2 23 23 C 1.53772 * 87.08345 * 25.43255 * 22 21 4 24 24 H 1.08998 * 109.47482 * 293.06412 * 1 2 3 25 25 H 1.09000 * 109.47143 * 53.06721 * 1 2 3 26 26 H 1.08999 * 109.47023 * 173.05902 * 1 2 3 27 27 H 1.09002 * 109.47303 * 183.95177 * 3 2 1 28 28 H 1.09001 * 109.47171 * 303.94766 * 3 2 1 29 29 H 1.09001 * 109.47865 * 63.94984 * 3 2 1 30 30 H 0.96999 * 120.00395 * 354.89784 * 7 5 4 31 31 H 1.08007 * 125.80374 * 0.02562 * 9 8 7 32 32 H 0.96997 * 120.00037 * 180.02562 * 15 14 12 33 33 H 1.08004 * 126.23733 * 359.97438 * 20 8 7 34 34 H 1.09002 * 113.61146 * 203.67351 * 21 4 2 35 35 H 1.09001 * 113.61712 * 334.57834 * 21 4 2 36 36 H 1.09005 * 113.61266 * 270.88211 * 22 21 4 37 37 H 1.09001 * 113.69192 * 139.99385 * 22 21 4 38 38 H 1.09002 * 113.61404 * 220.02465 * 23 22 21 39 39 H 1.08996 * 113.69610 * 89.12746 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.5249 -0.2361 2.4677 6 8 0.9490 0.8300 2.5266 7 7 1.7440 -0.9467 3.5918 8 6 1.4020 -0.4054 4.8434 9 6 0.8279 0.8584 5.0705 10 7 0.6554 1.0081 6.3595 11 7 1.1110 -0.1491 7.0040 12 6 1.1002 -0.3779 8.3579 13 1 1.4781 -1.3102 8.7511 14 6 0.6027 0.5901 9.2224 15 7 0.1437 1.7236 8.7446 16 14 0.5873 0.2785 11.0642 17 1 1.9759 0.0523 11.5396 18 1 0.0119 1.4570 11.7608 19 1 -0.2375 -0.9212 11.3563 20 6 1.5724 -1.0067 6.0478 21 6 1.8305 -2.2874 0.9875 22 6 3.1991 -2.2873 0.2860 23 6 3.5134 -1.0029 1.0711 24 1 -0.3634 0.4026 0.9455 25 1 -0.3633 0.6175 -0.8215 26 1 -0.3633 -1.0201 -0.1242 27 1 3.0827 1.3433 -0.0708 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8725 0.9232 30 1 2.1376 -1.8316 3.5372 31 1 0.5729 1.5823 4.3106 32 1 -0.2031 2.3993 9.3479 33 1 1.9942 -1.9863 6.2183 34 1 1.8269 -2.8220 1.9374 35 1 1.0057 -2.5750 0.3355 36 1 3.1373 -2.1361 -0.7917 37 1 3.8315 -3.1319 0.5594 38 1 4.0471 -0.2535 0.4866 39 1 3.9699 -1.1849 2.0440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763030154.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = 63.414075 kcal Electronic energy + Delta-G solvation = -22064.806043 eV Core-core repulsion = 18816.804383 eV Total energy + Delta-G solvation = -3248.001661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15304 -41.20185 -38.74467 -36.58141 -35.50707 -34.67224 -32.26606 -29.86710 -28.90149 -27.67806 -26.52637 -26.16177 -24.08073 -22.93870 -22.17218 -21.32500 -20.03158 -19.02650 -18.37667 -17.42555 -17.16477 -16.62440 -16.18569 -15.90633 -15.68151 -15.58310 -15.12201 -14.94608 -14.75943 -14.53748 -13.50885 -13.37195 -13.31167 -13.11096 -12.95987 -12.86317 -12.82813 -12.64086 -12.52193 -12.20299 -12.14565 -11.76033 -11.55294 -11.17122 -10.99746 -10.91965 -10.82081 -10.12377 -9.18909 -8.54004 -8.48449 -6.26091 1.19312 1.38742 1.49177 1.55488 1.83815 2.04269 2.29471 2.47904 2.81516 2.91073 3.07577 3.59508 3.63780 3.88080 3.92880 4.16631 4.40841 4.42556 4.58440 4.59479 4.65161 4.71513 4.75187 4.94878 4.95474 4.97912 5.01845 5.05606 5.15253 5.16573 5.25111 5.28023 5.45657 5.50305 5.92113 5.93748 5.96424 6.29642 6.71998 6.74086 7.38102 7.45343 7.66057 8.50856 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037270 B = 0.003982 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.094306 B = 7030.524811 C = 7468.524793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.488 5.488 3 C 0.010 3.990 4 C 0.058 3.942 5 C 0.481 3.519 6 O -0.575 6.575 7 N -0.613 5.613 8 C -0.044 4.044 9 C -0.061 4.061 10 N -0.311 5.311 11 N -0.166 5.166 12 C -0.356 4.356 13 H 0.142 0.858 14 C -0.006 4.006 15 N -0.826 5.826 16 Si 1.020 2.980 17 H -0.252 1.252 18 H -0.278 1.278 19 H -0.253 1.253 20 C -0.082 4.082 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.122 4.122 24 H 0.018 0.982 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.416 0.584 31 H 0.162 0.838 32 H 0.276 0.724 33 H 0.188 0.812 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 -10.472 -13.855 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.209 5.209 3 C -0.138 4.138 4 C -0.036 4.036 5 C 0.268 3.732 6 O -0.455 6.455 7 N -0.259 5.259 8 C -0.151 4.151 9 C -0.236 4.236 10 N -0.144 5.144 11 N 0.064 4.936 12 C -0.487 4.487 13 H 0.159 0.841 14 C -0.218 4.218 15 N -0.454 5.454 16 Si 0.838 3.162 17 H -0.176 1.176 18 H -0.203 1.203 19 H -0.177 1.177 20 C -0.232 4.232 21 C -0.159 4.159 22 C -0.142 4.142 23 C -0.160 4.160 24 H 0.037 0.963 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.253 0.747 31 H 0.179 0.821 32 H 0.086 0.914 33 H 0.205 0.795 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.684 -8.962 -13.318 17.029 hybrid contribution -0.275 0.180 0.934 0.991 sum 5.409 -8.781 -12.383 16.116 Atomic orbital electron populations 1.22514 0.87275 1.02832 1.00976 1.62480 1.08318 1.14127 1.36007 1.22551 1.01007 0.88924 1.01353 1.22710 0.99408 0.97014 0.84502 1.22369 0.79149 0.84675 0.86987 1.90520 1.43355 1.24699 1.86895 1.42651 1.60843 1.19832 1.02595 1.17398 1.15822 0.96216 0.85618 1.24057 1.07130 0.98219 0.94158 1.78144 1.24594 1.06600 1.05021 1.44827 1.33940 1.08954 1.05832 1.20612 1.44572 1.05966 0.77506 0.84078 1.26899 0.93993 0.93918 1.06957 1.70398 1.30889 1.05935 1.38188 0.84644 0.79981 0.78620 0.72905 1.17620 1.20340 1.17665 1.22005 1.14023 0.99943 0.87276 1.23105 1.00638 0.89791 1.02359 1.22645 0.94937 0.96561 1.00060 1.23097 0.90602 1.00160 1.02130 0.96350 0.90109 0.90337 0.90554 0.90169 0.95667 0.74659 0.82133 0.91418 0.79471 0.88547 0.89687 0.88798 0.88841 0.90090 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.18 127.69 1.17 1.48 16 2 N -0.49 -12.15 4.81 -899.94 -4.32 -16.47 16 3 C 0.01 0.25 9.16 127.69 1.17 1.42 16 4 C 0.06 1.43 0.43 3.31 0.00 1.43 16 5 C 0.48 16.91 6.40 87.66 0.56 17.47 16 6 O -0.57 -25.40 9.53 -3.11 -0.03 -25.43 16 7 N -0.61 -21.44 5.26 -303.92 -1.60 -23.04 16 8 C -0.04 -2.07 6.90 37.73 0.26 -1.81 16 9 C -0.06 -3.39 10.85 85.42 0.93 -2.47 16 10 N -0.31 -19.18 10.40 -56.46 -0.59 -19.76 16 11 N -0.17 -9.37 3.74 -190.01 -0.71 -10.08 16 12 C -0.36 -18.98 10.25 84.01 0.86 -18.12 16 13 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 14 C -0.01 -0.32 5.50 84.95 0.47 0.14 16 15 N -0.83 -48.36 11.81 21.66 0.26 -48.10 16 16 Si 1.02 38.73 29.55 68.60 2.03 40.76 16 17 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 18 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 20 C -0.08 -3.84 11.49 83.38 0.96 -2.88 16 21 C -0.12 -2.13 7.09 31.12 0.22 -1.91 16 22 C -0.10 -1.44 7.99 31.12 0.25 -1.20 16 23 C -0.12 -2.32 7.14 31.12 0.22 -2.10 16 24 H 0.02 0.61 5.82 -2.39 -0.01 0.60 16 25 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 26 H 0.08 1.74 7.16 -2.39 -0.02 1.72 16 27 H 0.08 1.74 6.62 -2.39 -0.02 1.72 16 28 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 29 H 0.02 0.85 5.79 -2.39 -0.01 0.84 16 30 H 0.42 10.76 7.18 -92.71 -0.67 10.09 16 31 H 0.16 9.19 5.94 -2.91 -0.02 9.18 16 32 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 33 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 34 H 0.10 1.51 6.53 -2.39 -0.02 1.49 16 35 H 0.08 1.44 7.19 -2.39 -0.02 1.42 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.52 6.66 -2.39 -0.02 1.51 16 39 H 0.09 1.72 8.03 -2.39 -0.02 1.70 16 Total: -1.00 -76.07 312.36 2.52 -73.55 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.42 Total: 37.10 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 7.07 Total: -8.53 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -6.96 Total: -117.46 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.03 Total: -25.43 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -76.07 2.52 -73.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763030154.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.962 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds