Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99682 * 2 1 4 4 C 1.38524 * 120.00189 * 180.02562 * 2 1 3 5 5 C 1.39683 * 120.48804 * 4.97128 * 4 2 1 6 6 C 1.38090 * 118.49106 * 180.02562 * 5 4 2 7 7 N 1.32515 * 119.28860 * 0.02562 * 6 5 4 8 8 C 1.32464 * 120.93825 * 359.97438 * 7 6 5 9 9 N 1.38393 * 119.17895 * 179.97438 * 8 7 6 10 10 C 1.47902 * 111.00439 * 239.89621 * 9 8 7 11 11 C 1.53991 * 107.05899 * 214.15742 * 10 9 8 12 12 C 1.54594 * 105.13996 * 1.22548 * 11 10 9 13 13 O 1.42897 * 110.71983 * 263.59960 * 12 11 10 14 14 C 1.50700 * 110.72352 * 140.31859 * 12 11 10 15 15 H 1.07999 * 119.99611 * 266.85003 * 14 12 11 16 16 C 1.37878 * 120.00206 * 86.84730 * 14 12 11 17 17 N 1.31519 * 119.99667 * 173.62197 * 16 14 12 18 18 Si 1.86802 * 120.00075 * 353.62673 * 16 14 12 19 19 H 1.48494 * 109.46980 * 86.35943 * 18 16 14 20 20 H 1.48499 * 109.46908 * 206.36049 * 18 16 14 21 21 H 1.48505 * 109.46955 * 326.36181 * 18 16 14 22 22 C 1.48531 * 110.99779 * 122.49957 * 9 8 7 23 23 N 1.32466 * 121.64208 * 0.02562 * 8 7 6 24 24 H 1.09000 * 109.47125 * 269.99101 * 1 2 3 25 25 H 1.08997 * 109.47530 * 29.99805 * 1 2 3 26 26 H 1.09003 * 109.47017 * 149.99601 * 1 2 3 27 27 H 1.09003 * 109.47130 * 240.00068 * 3 2 1 28 28 H 1.08999 * 109.46845 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.47243 * 120.00248 * 3 2 1 30 30 H 1.07999 * 120.75379 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.35338 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.91674 * 333.51386 * 10 9 8 33 33 H 1.09001 * 109.91771 * 94.60228 * 10 9 8 34 34 H 1.09001 * 110.30486 * 120.14412 * 11 10 9 35 35 H 1.09003 * 110.30682 * 242.30526 * 11 10 9 36 36 H 0.96700 * 114.00039 * 174.69707 * 13 12 11 37 37 H 0.97001 * 119.99421 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.67162 * 278.15629 * 22 9 8 39 39 H 1.09002 * 110.66814 * 41.28961 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1577 -1.1996 -0.0005 5 6 1.4735 -2.4129 -0.1054 6 6 2.2051 -3.5841 -0.1012 7 7 3.5248 -3.5238 0.0019 8 6 4.1477 -2.3588 0.1000 9 7 5.5274 -2.3383 0.2065 10 6 5.9523 -1.6901 1.4661 11 6 7.2672 -0.9455 1.1699 12 6 7.5380 -1.1867 -0.3329 13 8 8.4394 -2.2804 -0.5150 14 6 8.0734 0.0618 -0.9854 15 1 7.3963 0.7535 -1.4644 16 6 9.4275 0.3210 -0.9708 17 7 9.9089 1.3419 -1.6458 18 14 10.5783 -0.7780 0.0077 19 1 10.9830 -1.9381 -0.8263 20 1 11.7845 -0.0062 0.4008 21 1 9.8822 -1.2633 1.2263 22 6 6.1336 -1.5356 -0.8864 23 7 3.4828 -1.2131 0.0997 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8241 1.3266 -0.8900 28 1 1.4890 2.0972 0.0005 29 1 2.8241 1.3266 0.8899 30 1 0.3969 -2.4345 -0.1879 31 1 1.7069 -4.5391 -0.1803 32 1 5.1909 -0.9828 1.7950 33 1 6.1147 -2.4448 2.2357 34 1 7.1512 0.1202 1.3672 35 1 8.0783 -1.3562 1.7712 36 1 8.5792 -2.5251 -1.4401 37 1 10.8616 1.5240 -1.6358 38 1 6.2156 -2.1271 -1.7983 39 1 5.5545 -0.6296 -1.0651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826618951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = 46.075313 kcal Electronic energy + Delta-G solvation = -22272.315498 eV Core-core repulsion = 19023.561972 eV Total energy + Delta-G solvation = -3248.753526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98533 -38.63006 -37.05171 -35.11486 -32.82924 -32.27443 -31.46068 -29.42986 -28.15178 -28.08621 -25.92920 -24.89104 -23.22667 -21.84456 -20.65722 -19.59818 -17.81713 -17.59230 -17.10706 -15.91139 -15.61924 -15.10963 -15.03784 -14.85735 -14.44276 -14.16235 -14.07845 -13.66383 -13.29111 -12.78175 -12.62606 -12.57997 -12.15906 -12.04883 -11.76678 -11.70369 -11.17262 -11.00678 -10.90581 -10.53733 -10.37623 -10.20748 -9.96978 -9.54158 -9.16527 -9.10088 -8.50677 -8.35925 -8.11728 -7.98400 -6.12140 -4.22881 1.11629 1.52485 2.69892 3.53798 3.58575 3.74976 3.76722 3.96261 4.41756 4.57327 4.64494 4.92447 4.98642 5.08165 5.15068 5.16468 5.22648 5.38550 5.39464 5.53288 5.57234 5.60995 5.82070 5.83382 5.96295 6.16318 6.24982 6.31721 6.52496 6.61347 6.70335 6.92785 7.03922 7.11241 7.25256 7.33263 7.61538 7.73395 8.23766 8.54218 8.78882 8.95369 9.50938 10.97025 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005140 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.956229 B = 5446.315538 C = 6105.783591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.610 5.610 3 C 0.102 3.898 4 C 0.443 3.557 5 C -0.311 4.311 6 C 0.180 3.820 7 N -0.538 5.538 8 C 0.532 3.468 9 N -0.457 5.457 10 C 0.053 3.947 11 C -0.118 4.118 12 C 0.231 3.769 13 O -0.558 6.558 14 C -0.552 4.552 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.939 3.061 19 H -0.288 1.288 20 H -0.324 1.324 21 H -0.265 1.265 22 C 0.036 3.964 23 N -0.592 5.592 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.165 0.835 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.369 0.631 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 -3.929 3.686 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.325 5.325 3 C -0.041 4.041 4 C 0.198 3.802 5 C -0.339 4.339 6 C 0.016 3.984 7 N -0.257 5.257 8 C 0.176 3.824 9 N -0.182 5.182 10 C -0.074 4.074 11 C -0.157 4.157 12 C 0.190 3.810 13 O -0.365 6.365 14 C -0.589 4.589 15 H 0.095 0.905 16 C -0.128 4.128 17 N -0.527 5.527 18 Si 0.773 3.227 19 H -0.215 1.215 20 H -0.255 1.255 21 H -0.190 1.190 22 C -0.091 4.091 23 N -0.320 5.320 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.182 0.818 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.022 -4.153 4.338 18.996 hybrid contribution -0.773 0.395 -0.272 0.909 sum -18.795 -3.758 4.066 19.594 Atomic orbital electron populations 1.21755 0.78305 1.03164 1.01620 1.46256 1.05252 1.03336 1.77633 1.21591 0.96425 0.83127 1.02937 1.18413 0.88159 0.86124 0.87466 1.22101 1.02062 0.93095 1.16635 1.22835 0.88918 0.97871 0.88753 1.68169 1.09916 1.28595 1.19049 1.21327 0.91792 0.82675 0.86563 1.62292 0.99737 1.50848 1.05365 1.22883 0.97837 0.96548 0.90125 1.22776 0.94776 0.99958 0.98160 1.19927 0.84145 0.85367 0.91563 1.86160 1.65741 1.53514 1.31093 1.21233 0.93676 1.05879 1.38132 0.90456 1.25073 0.98546 0.95116 0.94089 1.69977 1.13931 1.28991 1.39824 0.85895 0.77258 0.78130 0.81418 1.21544 1.25547 1.19023 1.23991 0.97618 0.95085 0.92376 1.68132 1.07380 1.33019 1.23518 0.92851 0.90822 0.90975 0.92008 0.91141 0.91976 0.84329 0.81790 0.93255 0.91049 0.90061 0.90797 0.78367 0.92537 0.90816 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.27 59.85 0.61 1.29 16 2 N -0.61 -7.14 3.38 -189.50 -0.64 -7.78 16 3 C 0.10 1.16 10.22 59.85 0.61 1.77 16 4 C 0.44 6.48 7.39 -154.85 -1.14 5.33 16 5 C -0.31 -3.77 9.32 -39.10 -0.36 -4.14 16 6 C 0.18 2.37 11.28 -17.31 -0.20 2.18 16 7 N -0.54 -9.50 10.46 -14.02 -0.15 -9.64 16 8 C 0.53 10.17 6.37 -322.90 -2.06 8.12 16 9 N -0.46 -9.40 5.35 -171.45 -0.92 -10.32 16 10 C 0.05 1.04 6.58 -2.76 -0.02 1.03 16 11 C -0.12 -2.59 5.64 -25.38 -0.14 -2.73 16 12 C 0.23 5.41 0.78 -89.91 -0.07 5.34 16 13 O -0.56 -12.96 8.96 -35.23 -0.32 -13.27 16 14 C -0.55 -15.06 8.71 -34.44 -0.30 -15.36 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 17 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.94 23.76 24.92 -169.99 -4.24 19.52 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.32 -8.36 7.11 56.52 0.40 -7.96 16 21 H -0.26 -6.58 5.20 56.52 0.29 -6.29 16 22 C 0.04 0.77 5.61 -1.90 -0.01 0.76 16 23 N -0.59 -10.59 8.05 -13.17 -0.11 -10.70 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.40 7.92 -51.93 -0.41 -0.01 16 26 H 0.07 0.44 6.04 -51.93 -0.31 0.13 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.14 1.17 6.15 -52.49 -0.32 0.85 16 31 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.05 0.94 7.19 -51.93 -0.37 0.57 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.78 7.84 -51.93 -0.41 1.37 16 35 H 0.07 1.64 6.35 -51.93 -0.33 1.31 16 36 H 0.37 7.64 9.08 45.56 0.41 8.06 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.07 1.48 7.24 -51.93 -0.38 1.10 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -33.74 312.79 -8.77 -42.52 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.72 Total: 5.34 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.17 Total: 5.67 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -1.04 Total: -64.48 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.32 Total: -13.27 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.24 Total: 19.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.74 -8.77 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826618951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.592 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds