Wall clock time and date at job start Wed Apr 15 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99682 * 2 1 4 4 C 1.38524 * 120.00189 * 180.02562 * 2 1 3 5 5 C 1.39683 * 120.48804 * 4.97128 * 4 2 1 6 6 C 1.38090 * 118.49106 * 180.02562 * 5 4 2 7 7 N 1.32515 * 119.28860 * 0.02562 * 6 5 4 8 8 C 1.32464 * 120.93825 * 359.97438 * 7 6 5 9 9 N 1.38393 * 119.17895 * 179.97438 * 8 7 6 10 10 C 1.47902 * 111.00439 * 239.89621 * 9 8 7 11 11 C 1.53991 * 107.05899 * 214.15742 * 10 9 8 12 12 C 1.54594 * 105.13996 * 1.22548 * 11 10 9 13 13 O 1.42897 * 110.71983 * 263.59960 * 12 11 10 14 14 C 1.50700 * 110.72352 * 140.31859 * 12 11 10 15 15 H 1.07999 * 119.99611 * 266.85003 * 14 12 11 16 16 C 1.37878 * 120.00206 * 86.84730 * 14 12 11 17 17 N 1.31519 * 119.99667 * 173.62197 * 16 14 12 18 18 Si 1.86802 * 120.00075 * 353.62673 * 16 14 12 19 19 H 1.48494 * 109.46980 * 86.35943 * 18 16 14 20 20 H 1.48499 * 109.46908 * 206.36049 * 18 16 14 21 21 H 1.48505 * 109.46955 * 326.36181 * 18 16 14 22 22 C 1.48531 * 110.99779 * 122.49957 * 9 8 7 23 23 N 1.32466 * 121.64208 * 0.02562 * 8 7 6 24 24 H 1.09000 * 109.47125 * 269.99101 * 1 2 3 25 25 H 1.08997 * 109.47530 * 29.99805 * 1 2 3 26 26 H 1.09003 * 109.47017 * 149.99601 * 1 2 3 27 27 H 1.09003 * 109.47130 * 240.00068 * 3 2 1 28 28 H 1.08999 * 109.46845 * 0.02562 * 3 2 1 29 29 H 1.08995 * 109.47243 * 120.00248 * 3 2 1 30 30 H 1.07999 * 120.75379 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.35338 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.91674 * 333.51386 * 10 9 8 33 33 H 1.09001 * 109.91771 * 94.60228 * 10 9 8 34 34 H 1.09001 * 110.30486 * 120.14412 * 11 10 9 35 35 H 1.09003 * 110.30682 * 242.30526 * 11 10 9 36 36 H 0.96700 * 114.00039 * 174.69707 * 13 12 11 37 37 H 0.97001 * 119.99421 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.67162 * 278.15629 * 22 9 8 39 39 H 1.09002 * 110.66814 * 41.28961 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1577 -1.1996 -0.0005 5 6 1.4735 -2.4129 -0.1054 6 6 2.2051 -3.5841 -0.1012 7 7 3.5248 -3.5238 0.0019 8 6 4.1477 -2.3588 0.1000 9 7 5.5274 -2.3383 0.2065 10 6 5.9523 -1.6901 1.4661 11 6 7.2672 -0.9455 1.1699 12 6 7.5380 -1.1867 -0.3329 13 8 8.4394 -2.2804 -0.5150 14 6 8.0734 0.0618 -0.9854 15 1 7.3963 0.7535 -1.4644 16 6 9.4275 0.3210 -0.9708 17 7 9.9089 1.3419 -1.6458 18 14 10.5783 -0.7780 0.0077 19 1 10.9830 -1.9381 -0.8263 20 1 11.7845 -0.0062 0.4008 21 1 9.8822 -1.2633 1.2263 22 6 6.1336 -1.5356 -0.8864 23 7 3.4828 -1.2131 0.0997 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 2.8241 1.3266 -0.8900 28 1 1.4890 2.0972 0.0005 29 1 2.8241 1.3266 0.8899 30 1 0.3969 -2.4345 -0.1879 31 1 1.7069 -4.5391 -0.1803 32 1 5.1909 -0.9828 1.7950 33 1 6.1147 -2.4448 2.2357 34 1 7.1512 0.1202 1.3672 35 1 8.0783 -1.3562 1.7712 36 1 8.5792 -2.5251 -1.4401 37 1 10.8616 1.5240 -1.6358 38 1 6.2156 -2.1271 -1.7983 39 1 5.5545 -0.6296 -1.0651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826618951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:07 Heat of formation + Delta-G solvation = 20.927499 kcal Electronic energy + Delta-G solvation = -22273.405989 eV Core-core repulsion = 19023.561972 eV Total energy + Delta-G solvation = -3249.844017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.19087 -40.19770 -38.12726 -36.74868 -34.44175 -34.00404 -32.81815 -30.80897 -29.91978 -29.00613 -26.86312 -26.78732 -24.56481 -23.03291 -22.07999 -21.46428 -19.51562 -18.74686 -18.55464 -17.29358 -17.10312 -16.59937 -16.20481 -16.12246 -16.00959 -15.57976 -15.47269 -14.90271 -14.62724 -14.57281 -13.77433 -13.62080 -13.54647 -13.51701 -13.23739 -12.99993 -12.93268 -12.83835 -12.26646 -12.18050 -12.02469 -11.84923 -11.63368 -11.19677 -10.76074 -10.59381 -10.44549 -10.26099 -9.60382 -8.92885 -8.34333 -6.47399 -0.03186 0.44166 1.51172 1.52255 1.73111 1.82071 2.40765 2.46401 2.79001 2.99943 3.33842 3.60145 3.73630 3.78255 4.00864 4.17703 4.22019 4.24253 4.27071 4.42237 4.47101 4.48147 4.60069 4.67313 4.72324 4.79153 4.87276 4.89387 4.94185 5.17260 5.24010 5.34719 5.43285 5.65304 5.67980 5.89914 6.06611 6.22704 6.53273 6.58764 7.04180 7.31846 7.35188 8.78808 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005140 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.956229 B = 5446.315538 C = 6105.783591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.609 5.609 3 C 0.103 3.897 4 C 0.420 3.580 5 C -0.289 4.289 6 C 0.172 3.828 7 N -0.564 5.564 8 C 0.505 3.495 9 N -0.462 5.462 10 C 0.063 3.937 11 C -0.115 4.115 12 C 0.230 3.770 13 O -0.559 6.559 14 C -0.548 4.548 15 H 0.039 0.961 16 C 0.032 3.968 17 N -0.936 5.936 18 Si 0.996 3.004 19 H -0.279 1.279 20 H -0.330 1.330 21 H -0.256 1.256 22 C 0.051 3.949 23 N -0.620 5.620 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.183 0.817 31 H 0.208 0.792 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.874 -5.548 4.517 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.323 5.323 3 C -0.040 4.040 4 C 0.175 3.825 5 C -0.316 4.316 6 C 0.011 3.989 7 N -0.285 5.285 8 C 0.148 3.852 9 N -0.187 5.187 10 C -0.064 4.064 11 C -0.153 4.153 12 C 0.189 3.811 13 O -0.368 6.368 14 C -0.586 4.586 15 H 0.058 0.942 16 C -0.168 4.168 17 N -0.574 5.574 18 Si 0.828 3.172 19 H -0.206 1.206 20 H -0.262 1.262 21 H -0.181 1.181 22 C -0.077 4.077 23 N -0.350 5.350 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.200 0.800 31 H 0.224 0.776 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.759 -5.778 5.164 22.158 hybrid contribution -0.172 0.970 -0.586 1.146 sum -20.931 -4.808 4.579 21.959 Atomic orbital electron populations 1.22085 0.75268 1.05033 1.03027 1.46586 1.06977 1.02312 1.76422 1.21557 0.97100 0.84620 1.00689 1.18924 0.87548 0.88192 0.87838 1.22523 1.04006 0.91510 1.13538 1.23584 0.87544 1.00125 0.87687 1.68120 1.12250 1.28050 1.20031 1.21103 0.91170 0.83651 0.89252 1.62178 1.01660 1.50147 1.04695 1.22771 0.96421 0.96691 0.90509 1.22655 0.96117 0.99846 0.96722 1.19785 0.84951 0.83866 0.92473 1.86116 1.65615 1.52849 1.32174 1.21403 0.93144 1.06718 1.37366 0.94229 1.25777 1.00001 0.96205 0.94853 1.70082 1.14398 1.31052 1.41847 0.84970 0.75179 0.76546 0.80510 1.20567 1.26187 1.18124 1.23641 0.96326 0.94630 0.93063 1.67991 1.09468 1.32876 1.24646 0.91524 0.88767 0.89399 0.94556 0.87405 0.94012 0.80017 0.77565 0.93194 0.89587 0.90960 0.90817 0.77192 0.92368 0.90763 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.27 127.77 1.31 2.21 16 2 N -0.61 -12.98 3.38 -753.45 -2.54 -15.52 16 3 C 0.10 2.30 10.22 127.77 1.31 3.60 16 4 C 0.42 11.56 7.39 133.21 0.98 12.54 16 5 C -0.29 -5.98 9.32 22.58 0.21 -5.77 16 6 C 0.17 4.00 11.28 84.55 0.95 4.96 16 7 N -0.56 -19.09 10.46 -198.28 -2.07 -21.16 16 8 C 0.51 19.14 6.37 261.52 1.67 20.81 16 9 N -0.46 -18.98 5.35 -696.34 -3.73 -22.71 16 10 C 0.06 2.47 6.58 86.45 0.57 3.04 16 11 C -0.12 -5.04 5.64 31.47 0.18 -4.86 16 12 C 0.23 10.91 0.78 -10.34 -0.01 10.90 16 13 O -0.56 -25.49 8.96 -148.98 -1.33 -26.82 16 14 C -0.55 -30.91 8.71 25.60 0.22 -30.69 16 15 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 16 C 0.03 1.83 5.46 84.65 0.46 2.29 16 17 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 18 Si 1.00 49.12 24.92 68.60 1.71 50.83 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.33 -16.53 7.11 99.48 0.71 -15.83 16 21 H -0.26 -12.20 5.20 99.48 0.52 -11.68 16 22 C 0.05 2.24 5.61 86.65 0.49 2.73 16 23 N -0.62 -22.16 8.05 -195.57 -1.57 -23.74 16 24 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.09 0.63 7.92 -2.39 -0.02 0.61 16 26 H 0.09 0.64 6.04 -2.39 -0.01 0.63 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 1.52 7.79 -2.39 -0.02 1.50 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.18 2.07 6.15 -2.91 -0.02 2.05 16 31 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.05 1.93 7.19 -2.39 -0.02 1.91 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.07 3.24 7.84 -2.39 -0.02 3.22 16 35 H 0.07 3.21 6.35 -2.39 -0.02 3.19 16 36 H 0.38 15.40 9.08 -74.06 -0.67 14.73 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.05 2.21 7.24 -2.39 -0.02 2.20 16 Total: -1.00 -75.36 312.79 -0.70 -76.06 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.21 Total: 18.86 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.34 Total: 21.77 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -9.62 Total: -140.70 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.33 Total: -26.82 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.71 Total: 50.83 kcal Total: -75.36 -0.70 -76.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826618951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.985 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds