Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99928 * 2 1 4 4 C 1.38628 * 119.99816 * 179.97438 * 2 1 3 5 5 C 1.39171 * 120.48560 * 4.72491 * 4 2 1 6 6 C 1.39131 * 118.27053 * 179.78251 * 5 4 2 7 7 N 1.38623 * 120.48701 * 180.24158 * 6 5 4 8 8 C 1.48535 * 111.00370 * 62.85697 * 7 6 5 9 9 C 1.54936 * 103.22788 * 159.71876 * 8 7 6 10 10 C 1.54592 * 102.92489 * 322.58801 * 9 8 7 11 11 O 1.42901 * 110.30942 * 263.04011 * 10 9 8 12 12 C 1.50704 * 110.39697 * 140.91494 * 10 9 8 13 13 H 1.07997 * 119.99884 * 244.24273 * 12 10 9 14 14 C 1.37878 * 119.99595 * 64.23004 * 12 10 9 15 15 N 1.31517 * 120.00410 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99722 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47249 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47345 * 120.00381 * 16 14 12 19 19 H 1.48500 * 109.47265 * 240.00248 * 16 14 12 20 20 C 1.47909 * 111.00074 * 180.25315 * 7 6 5 21 21 N 1.33204 * 119.02446 * 0.49040 * 6 5 4 22 22 C 1.31725 * 120.87982 * 359.74940 * 21 6 5 23 23 N 1.31752 * 121.91655 * 359.97438 * 22 21 6 24 24 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47073 * 120.00208 * 1 2 3 26 26 H 1.09000 * 109.47212 * 240.00290 * 1 2 3 27 27 H 1.08996 * 109.47008 * 90.00093 * 3 2 1 28 28 H 1.08997 * 109.46865 * 209.99779 * 3 2 1 29 29 H 1.08998 * 109.47058 * 329.99292 * 3 2 1 30 30 H 1.08001 * 120.86582 * 0.02562 * 5 4 2 31 31 H 1.08998 * 110.66751 * 278.15957 * 8 7 6 32 32 H 1.09000 * 110.66168 * 41.28507 * 8 7 6 33 33 H 1.09003 * 110.72529 * 204.22835 * 9 8 7 34 34 H 1.09002 * 110.87727 * 81.02015 * 9 8 7 35 35 H 0.96697 * 114.00168 * 295.71672 * 11 10 9 36 36 H 0.96990 * 120.00287 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.91514 * 333.50603 * 20 7 6 38 38 H 1.09004 * 109.91480 * 94.79979 * 20 7 6 39 39 H 1.08008 * 119.03854 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2006 0.0005 5 6 1.4760 -2.4097 -0.0977 6 6 2.2179 -3.5867 -0.0974 7 7 1.5859 -4.8164 -0.1982 8 6 0.8703 -4.9426 -1.4936 9 6 0.7001 -6.4739 -1.6569 10 6 2.0256 -7.0316 -1.0897 11 8 2.9475 -7.2934 -2.1497 12 6 1.7706 -8.2878 -0.2972 13 1 1.9722 -8.3074 0.7636 14 6 1.2796 -9.4121 -0.9266 15 7 1.0343 -9.3883 -2.2185 16 14 0.9628 -10.9690 0.0557 17 1 1.3169 -10.7369 1.4791 18 1 -0.4734 -11.3333 -0.0436 19 1 1.7926 -12.0743 -0.4873 20 6 2.5688 -5.9213 -0.1711 21 7 3.5439 -3.5149 0.0062 22 6 4.1524 -2.3506 0.1023 23 7 3.4860 -1.2140 0.1001 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3634 -0.5138 0.8900 27 1 2.3792 1.5833 1.0276 28 1 3.1499 1.1383 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 0.3991 -2.4335 -0.1762 31 1 -0.1011 -4.4504 -1.4461 32 1 1.4707 -4.5335 -2.3061 33 1 0.5882 -6.7397 -2.7081 34 1 -0.1496 -6.8343 -1.0769 35 1 2.6582 -7.9847 -2.7608 36 1 0.6893 -10.1793 -2.6612 37 1 3.5319 -5.5707 -0.5420 38 1 2.6746 -6.2993 0.8458 39 1 5.2291 -2.3269 0.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894348774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 30.276783 kcal Electronic energy + Delta-G solvation = -21956.920014 eV Core-core repulsion = 18707.481412 eV Total energy + Delta-G solvation = -3249.438602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83675 -38.53609 -36.90493 -35.04894 -32.29885 -32.07174 -31.24018 -29.11382 -28.20388 -28.01948 -25.79069 -24.41609 -23.47829 -21.84856 -20.40647 -19.44664 -17.61707 -17.22312 -17.03724 -15.61928 -15.53507 -15.12647 -14.92892 -14.63835 -14.41289 -14.06636 -13.96206 -13.77216 -12.95310 -12.80982 -12.51955 -12.36535 -12.15285 -12.06185 -11.52909 -11.28672 -11.25465 -10.84319 -10.69483 -10.47098 -10.43954 -10.33264 -10.03183 -9.71493 -9.21400 -8.83914 -8.58605 -8.15485 -8.08421 -7.81603 -6.20809 -4.26772 1.38875 1.65886 2.77460 3.23445 3.32167 3.37485 3.98081 4.27987 4.32956 4.47838 4.69153 4.99202 5.02098 5.09113 5.16825 5.32320 5.44434 5.47804 5.56957 5.61813 5.67336 5.78352 5.82793 6.02709 6.10598 6.24803 6.36938 6.63207 6.74282 6.87918 6.95282 7.05506 7.24028 7.41960 7.45418 7.67269 7.71023 7.83071 8.14874 8.60476 8.75630 9.40767 9.54193 10.87024 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036102 B = 0.004079 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.399340 B = 6862.082370 C = 7112.769955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.613 5.613 3 C 0.102 3.898 4 C 0.441 3.559 5 C -0.306 4.306 6 C 0.385 3.615 7 N -0.459 5.459 8 C 0.047 3.953 9 C -0.121 4.121 10 C 0.243 3.757 11 O -0.591 6.591 12 C -0.527 4.527 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.054 3.946 21 N -0.585 5.585 22 C 0.353 3.647 23 N -0.601 5.601 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.384 0.616 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 17.039 1.725 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.328 5.328 3 C -0.041 4.041 4 C 0.201 3.799 5 C -0.336 4.336 6 C 0.148 3.852 7 N -0.176 5.176 8 C -0.078 4.078 9 C -0.160 4.160 10 C 0.202 3.798 11 O -0.401 6.401 12 C -0.565 4.565 13 H 0.082 0.918 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.729 3.271 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.072 4.072 21 N -0.309 5.309 22 C 0.062 3.938 23 N -0.328 5.328 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.919 17.467 2.376 17.652 hybrid contribution -1.069 -1.223 -0.285 1.649 sum -1.988 16.244 2.091 16.498 Atomic orbital electron populations 1.21690 0.78222 1.02724 1.01959 1.46109 1.05247 1.03001 1.78395 1.21570 0.97521 0.83712 1.01293 1.18213 0.88459 0.85651 0.87597 1.21445 1.01746 0.91041 1.19406 1.20156 0.87632 0.91107 0.86327 1.61665 1.24213 0.99981 1.31749 1.23366 0.97026 1.00777 0.86590 1.23091 1.01664 0.89398 1.01818 1.19359 0.84242 0.91638 0.84525 1.86115 1.49510 1.61661 1.42772 1.21736 1.42999 0.96309 0.95497 0.91791 1.25015 0.94191 0.99027 0.95116 1.69619 1.45686 1.29973 1.08809 0.86389 0.77774 0.82596 0.80362 1.19627 1.20930 1.20876 1.22925 0.94248 0.88795 1.01193 1.68452 1.09842 1.29746 1.22848 1.24438 1.00135 0.81558 0.87652 1.67900 1.06764 1.32417 1.25739 0.90389 0.92234 0.92225 0.93449 0.90436 0.91936 0.84471 0.90802 0.93570 0.90907 0.90907 0.76506 0.92356 0.90235 0.90009 0.79207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 9.44 59.85 0.57 1.39 16 2 N -0.61 -7.14 3.38 -189.55 -0.64 -7.78 16 3 C 0.10 0.94 10.40 59.85 0.62 1.56 16 4 C 0.44 6.64 7.38 -154.71 -1.14 5.50 16 5 C -0.31 -4.96 8.81 -38.90 -0.34 -5.30 16 6 C 0.38 7.32 6.20 -154.70 -0.96 6.36 16 7 N -0.46 -9.44 5.30 -169.13 -0.90 -10.34 16 8 C 0.05 0.92 6.09 -1.90 -0.01 0.91 16 9 C -0.12 -2.75 5.50 -24.87 -0.14 -2.89 16 10 C 0.24 6.09 0.99 -90.42 -0.09 6.00 16 11 O -0.59 -15.60 12.93 -35.23 -0.46 -16.06 16 12 C -0.53 -14.21 8.10 -34.44 -0.28 -14.49 16 13 H 0.06 1.74 7.34 -52.49 -0.39 1.35 16 14 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 15 N -0.90 -23.82 10.88 55.43 0.60 -23.22 16 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.05 1.26 5.84 -2.75 -0.02 1.24 16 21 N -0.58 -11.02 8.30 -13.88 -0.12 -11.14 16 22 C 0.35 5.58 12.28 -92.25 -1.13 4.44 16 23 N -0.60 -9.33 9.31 -13.88 -0.13 -9.46 16 24 H 0.08 0.45 7.79 -51.93 -0.40 0.05 16 25 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 26 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 29 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 30 H 0.14 1.99 6.85 -52.49 -0.36 1.63 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.91 7.99 -51.93 -0.42 0.50 16 33 H 0.07 1.70 8.06 -51.93 -0.42 1.28 16 34 H 0.07 1.72 7.86 -51.93 -0.41 1.32 16 35 H 0.38 10.19 7.05 45.56 0.32 10.51 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.08 1.90 6.35 -51.93 -0.33 1.57 16 38 H 0.08 1.93 7.39 -51.93 -0.38 1.55 16 39 H 0.19 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -29.96 317.90 -9.69 -39.66 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.81 Total: 11.42 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.02 Total: 6.42 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.18 Total: -61.93 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.46 Total: -16.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.96 -9.69 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.933 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds