Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99928 * 2 1 4 4 C 1.38628 * 119.99816 * 179.97438 * 2 1 3 5 5 C 1.39171 * 120.48560 * 4.72491 * 4 2 1 6 6 C 1.39131 * 118.27053 * 179.78251 * 5 4 2 7 7 N 1.38623 * 120.48701 * 180.24158 * 6 5 4 8 8 C 1.48535 * 111.00370 * 62.85697 * 7 6 5 9 9 C 1.54936 * 103.22788 * 159.71876 * 8 7 6 10 10 C 1.54592 * 102.92489 * 322.58801 * 9 8 7 11 11 O 1.42901 * 110.30942 * 263.04011 * 10 9 8 12 12 C 1.50704 * 110.39697 * 140.91494 * 10 9 8 13 13 H 1.07997 * 119.99884 * 244.24273 * 12 10 9 14 14 C 1.37878 * 119.99595 * 64.23004 * 12 10 9 15 15 N 1.31517 * 120.00410 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99722 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47249 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47345 * 120.00381 * 16 14 12 19 19 H 1.48500 * 109.47265 * 240.00248 * 16 14 12 20 20 C 1.47909 * 111.00074 * 180.25315 * 7 6 5 21 21 N 1.33204 * 119.02446 * 0.49040 * 6 5 4 22 22 C 1.31725 * 120.87982 * 359.74940 * 21 6 5 23 23 N 1.31752 * 121.91655 * 359.97438 * 22 21 6 24 24 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47073 * 120.00208 * 1 2 3 26 26 H 1.09000 * 109.47212 * 240.00290 * 1 2 3 27 27 H 1.08996 * 109.47008 * 90.00093 * 3 2 1 28 28 H 1.08997 * 109.46865 * 209.99779 * 3 2 1 29 29 H 1.08998 * 109.47058 * 329.99292 * 3 2 1 30 30 H 1.08001 * 120.86582 * 0.02562 * 5 4 2 31 31 H 1.08998 * 110.66751 * 278.15957 * 8 7 6 32 32 H 1.09000 * 110.66168 * 41.28507 * 8 7 6 33 33 H 1.09003 * 110.72529 * 204.22835 * 9 8 7 34 34 H 1.09002 * 110.87727 * 81.02015 * 9 8 7 35 35 H 0.96697 * 114.00168 * 295.71672 * 11 10 9 36 36 H 0.96990 * 120.00287 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.91514 * 333.50603 * 20 7 6 38 38 H 1.09004 * 109.91480 * 94.79979 * 20 7 6 39 39 H 1.08008 * 119.03854 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1582 -1.2006 0.0005 5 6 1.4760 -2.4097 -0.0977 6 6 2.2179 -3.5867 -0.0974 7 7 1.5859 -4.8164 -0.1982 8 6 0.8703 -4.9426 -1.4936 9 6 0.7001 -6.4739 -1.6569 10 6 2.0256 -7.0316 -1.0897 11 8 2.9475 -7.2934 -2.1497 12 6 1.7706 -8.2878 -0.2972 13 1 1.9722 -8.3074 0.7636 14 6 1.2796 -9.4121 -0.9266 15 7 1.0343 -9.3883 -2.2185 16 14 0.9628 -10.9690 0.0557 17 1 1.3169 -10.7369 1.4791 18 1 -0.4734 -11.3333 -0.0436 19 1 1.7926 -12.0743 -0.4873 20 6 2.5688 -5.9213 -0.1711 21 7 3.5439 -3.5149 0.0062 22 6 4.1524 -2.3506 0.1023 23 7 3.4860 -1.2140 0.1001 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3634 -0.5138 0.8900 27 1 2.3792 1.5833 1.0276 28 1 3.1499 1.1383 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 0.3991 -2.4335 -0.1762 31 1 -0.1011 -4.4504 -1.4461 32 1 1.4707 -4.5335 -2.3061 33 1 0.5882 -6.7397 -2.7081 34 1 -0.1496 -6.8343 -1.0769 35 1 2.6582 -7.9847 -2.7608 36 1 0.6893 -10.1793 -2.6612 37 1 3.5319 -5.5707 -0.5420 38 1 2.6746 -6.2993 0.8458 39 1 5.2291 -2.3269 0.1845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894348774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 10.594630 kcal Electronic energy + Delta-G solvation = -21957.773496 eV Core-core repulsion = 18707.481412 eV Total energy + Delta-G solvation = -3250.292084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13057 -40.12051 -38.01588 -36.78652 -34.13353 -33.69494 -32.51643 -30.57700 -29.95735 -28.94736 -27.16242 -25.99669 -24.74819 -23.24089 -21.87615 -21.22862 -19.15679 -18.81956 -18.43956 -16.94837 -16.91822 -16.59650 -16.33250 -16.09104 -15.81301 -15.45031 -15.37682 -15.06664 -14.42199 -14.19449 -13.94442 -13.46461 -13.33749 -13.23962 -13.14728 -13.03615 -12.83339 -12.62198 -12.33929 -12.26030 -12.06677 -11.86470 -11.59765 -11.13749 -11.04243 -10.61645 -10.17830 -10.10658 -9.55406 -8.88881 -8.22205 -6.35789 0.11662 0.41267 1.40624 1.44116 1.55158 1.85728 2.40062 2.58544 2.96513 3.05518 3.34979 3.53282 3.82366 4.00845 4.12840 4.19858 4.25641 4.32016 4.42132 4.51302 4.53317 4.60507 4.67981 4.76448 4.79202 4.88940 4.96309 5.01618 5.11378 5.22205 5.32137 5.53984 5.57448 5.76952 5.79069 6.09151 6.14771 6.23190 6.49082 6.67988 7.34337 7.35983 7.46238 8.84401 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036102 B = 0.004079 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.399340 B = 6862.082370 C = 7112.769955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.607 5.607 3 C 0.098 3.902 4 C 0.435 3.565 5 C -0.303 4.303 6 C 0.358 3.642 7 N -0.462 5.462 8 C 0.059 3.941 9 C -0.111 4.111 10 C 0.228 3.772 11 O -0.600 6.600 12 C -0.555 4.555 13 H 0.052 0.948 14 C 0.031 3.969 15 N -0.913 5.913 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.279 1.279 20 C 0.068 3.932 21 N -0.618 5.618 22 C 0.351 3.649 23 N -0.602 5.602 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.379 0.621 36 H 0.271 0.729 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.695 18.991 1.993 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.320 5.320 3 C -0.044 4.044 4 C 0.193 3.807 5 C -0.333 4.333 6 C 0.122 3.878 7 N -0.180 5.180 8 C -0.066 4.066 9 C -0.150 4.150 10 C 0.188 3.812 11 O -0.410 6.410 12 C -0.593 4.593 13 H 0.070 0.930 14 C -0.169 4.169 15 N -0.553 5.553 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.201 1.201 19 H -0.204 1.204 20 C -0.059 4.059 21 N -0.343 5.343 22 C 0.060 3.940 23 N -0.329 5.329 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.172 0.828 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.022 19.481 2.644 19.763 hybrid contribution -0.712 -1.661 -0.375 1.846 sum -2.734 17.819 2.269 18.170 Atomic orbital electron populations 1.21967 0.76214 1.05049 1.02116 1.46511 1.06627 1.02528 1.76363 1.21752 0.97458 0.83226 1.02000 1.18505 0.88495 0.86771 0.86950 1.21522 1.02401 0.90450 1.18932 1.20245 0.88289 0.91061 0.88158 1.61708 1.23823 1.00111 1.32340 1.23290 0.98511 0.98404 0.86382 1.22837 0.99781 0.91819 1.00529 1.19585 0.85260 0.91894 0.84462 1.86108 1.50343 1.61457 1.43076 1.21922 1.44236 0.97875 0.95263 0.93020 1.25661 0.93748 1.01435 0.96094 1.69684 1.45316 1.30727 1.09562 0.85464 0.77892 0.79153 0.78817 1.19900 1.20070 1.20449 1.22602 0.94459 0.89257 0.99623 1.68398 1.10191 1.31406 1.24330 1.25022 1.01395 0.80896 0.86679 1.68017 1.07127 1.31998 1.25747 0.87104 0.91871 0.92209 0.92830 0.91733 0.88662 0.82841 0.87406 0.94010 0.91999 0.92186 0.77034 0.91980 0.91528 0.91524 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 9.44 127.77 1.21 2.38 16 2 N -0.61 -12.28 3.38 -753.63 -2.55 -14.83 16 3 C 0.10 1.47 10.40 127.77 1.33 2.80 16 4 C 0.44 12.25 7.38 132.97 0.98 13.23 16 5 C -0.30 -9.34 8.81 22.71 0.20 -9.14 16 6 C 0.36 13.50 6.20 132.95 0.82 14.33 16 7 N -0.46 -19.10 5.30 -689.00 -3.65 -22.75 16 8 C 0.06 2.27 6.09 86.65 0.53 2.80 16 9 C -0.11 -5.11 5.50 31.80 0.17 -4.94 16 10 C 0.23 11.76 0.99 -10.66 -0.01 11.74 16 11 O -0.60 -32.69 12.93 -148.98 -1.93 -34.62 16 12 C -0.55 -30.68 8.10 25.60 0.21 -30.47 16 13 H 0.05 2.90 7.34 -2.91 -0.02 2.88 16 14 C 0.03 1.64 5.26 84.65 0.45 2.08 16 15 N -0.91 -48.66 10.88 21.45 0.23 -48.43 16 16 Si 0.96 42.70 29.54 68.60 2.03 44.73 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 C 0.07 3.23 5.84 86.44 0.50 3.73 16 21 N -0.62 -23.38 8.30 -197.84 -1.64 -25.02 16 22 C 0.35 10.79 12.28 180.92 2.22 13.01 16 23 N -0.60 -17.76 9.31 -197.83 -1.84 -19.60 16 24 H 0.11 0.76 7.79 -2.39 -0.02 0.75 16 25 H 0.06 0.83 7.79 -2.38 -0.02 0.82 16 26 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.17 7.48 -2.39 -0.02 1.15 16 29 H 0.09 0.84 7.92 -2.39 -0.02 0.82 16 30 H 0.15 4.08 6.85 -2.91 -0.02 4.06 16 31 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 32 H 0.04 1.64 7.99 -2.39 -0.02 1.62 16 33 H 0.06 2.94 8.06 -2.39 -0.02 2.92 16 34 H 0.06 2.88 7.86 -2.39 -0.02 2.86 16 35 H 0.38 20.78 7.05 -74.06 -0.52 20.25 16 36 H 0.27 13.64 8.31 -92.72 -0.77 12.87 16 37 H 0.07 3.31 6.35 -2.39 -0.02 3.29 16 38 H 0.07 3.30 7.39 -2.38 -0.02 3.29 16 39 H 0.22 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -65.27 317.90 -0.19 -65.46 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.54 Total: 33.48 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 8.61 Total: 21.57 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -9.45 Total: -130.63 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.93 Total: -34.62 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.27 -0.19 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894348774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds