Wall clock time and date at job start Wed Apr 15 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39169 * 119.99838 * 179.97438 * 2 1 3 5 5 C 1.39505 * 120.86161 * 179.72094 * 4 2 1 6 6 C 1.37876 * 119.06570 * 179.75218 * 5 4 2 7 7 N 1.32010 * 120.84223 * 0.53775 * 6 5 4 8 8 C 1.31982 * 121.90992 * 359.71845 * 7 6 5 9 9 C 1.50704 * 119.57817 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46993 * 275.01612 * 9 8 7 11 11 C 1.34773 * 119.99662 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00336 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99873 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00491 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47246 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99685 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00114 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 120.00284 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47037 * 89.99941 * 19 17 15 21 21 H 1.48495 * 109.46842 * 210.00100 * 19 17 15 22 22 H 1.48505 * 109.46697 * 330.00076 * 19 17 15 23 23 C 1.37920 * 120.84377 * 0.02562 * 8 7 6 24 24 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 25 25 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 26 26 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 27 27 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 29 29 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 30 30 H 1.07993 * 120.46384 * 0.02562 * 5 4 2 31 31 H 1.07991 * 119.57920 * 180.25441 * 6 5 4 32 32 H 1.08997 * 109.47139 * 35.01817 * 9 8 7 33 33 H 1.09003 * 109.46840 * 155.02121 * 9 8 7 34 34 H 0.96998 * 119.99965 * 0.02562 * 10 9 8 35 35 H 0.97005 * 119.99312 * 359.97438 * 13 11 10 36 36 H 1.09004 * 109.46761 * 300.00176 * 14 13 11 37 37 H 1.09004 * 109.46643 * 59.99420 * 14 13 11 38 38 H 0.97004 * 120.00359 * 179.97438 * 18 17 15 39 39 H 1.07993 * 120.46500 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2053 0.0005 5 6 3.5557 -1.2263 -0.0053 6 6 4.2073 -2.4413 0.0007 7 7 3.5283 -3.5734 0.0011 8 6 2.2087 -3.5955 0.0014 9 6 1.4868 -4.9183 0.0025 10 7 1.3585 -5.4058 -1.3731 11 6 0.7431 -6.5796 -1.6174 12 8 0.2939 -7.2339 -0.6963 13 7 0.6256 -7.0284 -2.8829 14 6 -0.0439 -8.3041 -3.1486 15 6 -0.0421 -8.5730 -4.6314 16 1 0.4119 -7.8643 -5.3082 17 6 -0.6210 -9.7233 -5.1240 18 7 -0.6200 -9.9578 -6.4181 19 14 -1.4069 -10.9487 -3.9534 20 1 -2.8392 -10.6050 -3.7653 21 1 -1.2963 -12.3164 -4.5211 22 1 -0.7096 -10.8987 -2.6432 23 6 1.4819 -2.4233 0.0008 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 -0.8900 -0.5138 26 1 -0.3633 0.8900 -0.5139 27 1 1.4892 2.0972 -0.0005 28 1 2.8242 1.3265 0.8901 29 1 2.8242 1.3264 -0.8899 30 1 4.1172 -0.3038 -0.0099 31 1 5.2869 -2.4673 0.0004 32 1 2.0516 -5.6400 0.5926 33 1 0.4951 -4.7907 0.4366 34 1 1.7172 -4.8840 -2.1080 35 1 0.9837 -6.5062 -3.6178 36 1 0.4845 -9.1060 -2.6329 37 1 -1.0719 -8.2566 -2.7894 38 1 -1.0269 -10.7673 -6.7647 39 1 0.4023 -2.4485 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922228765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:18 Heat of formation + Delta-G solvation = 16.924275 kcal Electronic energy + Delta-G solvation = -20545.154099 eV Core-core repulsion = 17295.136489 eV Total energy + Delta-G solvation = -3250.017610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61488 -39.15416 -37.36559 -34.82306 -34.01437 -32.33887 -31.54138 -31.41703 -28.96979 -27.90656 -26.21567 -25.34567 -22.88884 -22.01975 -20.87644 -20.22694 -18.32381 -17.55412 -16.95937 -16.30070 -15.96604 -15.55992 -15.54213 -15.06395 -14.60605 -14.45305 -14.39698 -13.91330 -13.63000 -13.19041 -13.10667 -13.00442 -12.93824 -12.64332 -12.36945 -12.25909 -11.90322 -11.50192 -10.92674 -10.84705 -10.70425 -9.90967 -9.65608 -9.52471 -9.40372 -9.18315 -8.78951 -8.68789 -8.02341 -7.92782 -6.15346 -4.16809 0.92462 1.31985 2.60168 3.27956 3.33063 3.39942 3.49061 3.86248 3.89456 4.18014 4.39809 4.41041 4.47557 4.77403 4.79374 4.85438 5.02994 5.07016 5.11732 5.16924 5.19654 5.20421 5.29088 5.45523 5.55674 5.72433 5.77688 5.98130 6.40910 6.70817 6.80046 6.82142 6.93555 7.19019 7.32236 7.48533 7.64830 7.99880 8.34754 8.76231 8.88558 9.28746 9.46913 10.96701 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002939 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.946382 B = 9526.309421 C = 9722.216546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.094 3.906 4 C 0.246 3.754 5 C -0.247 4.247 6 C 0.139 3.861 7 N -0.509 5.509 8 C 0.153 3.847 9 C 0.194 3.806 10 N -0.747 5.747 11 C 0.697 3.303 12 O -0.604 6.604 13 N -0.723 5.723 14 C 0.238 3.762 15 C -0.541 4.541 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.230 4.230 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.394 0.606 35 H 0.392 0.608 36 H 0.023 0.977 37 H 0.018 0.982 38 H 0.267 0.733 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 24.791 13.404 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.340 5.340 3 C -0.049 4.049 4 C 0.135 3.865 5 C -0.273 4.273 6 C -0.018 4.018 7 N -0.222 5.222 8 C 0.016 3.984 9 C 0.069 3.931 10 N -0.405 5.405 11 C 0.397 3.603 12 O -0.483 6.483 13 N -0.375 5.375 14 C 0.116 3.884 15 C -0.579 4.579 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.255 4.255 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.225 0.775 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.017 23.393 14.103 27.970 hybrid contribution -0.528 0.840 -0.272 1.028 sum 5.490 24.233 13.831 28.437 Atomic orbital electron populations 1.21769 0.78856 1.03238 1.01623 1.46291 1.05450 1.03116 1.79114 1.21665 0.97178 0.84609 1.01485 1.18024 0.91395 0.85980 0.91070 1.21634 0.92620 1.00312 1.12697 1.22492 1.00061 0.86829 0.92380 1.67591 1.08190 1.30362 1.16030 1.20986 0.89668 0.94221 0.93522 1.19813 0.98916 0.90179 0.84206 1.44969 1.64295 1.23128 1.08059 1.16053 0.79244 0.80677 0.84322 1.90861 1.55296 1.58391 1.43791 1.45375 1.61798 1.25294 1.05006 1.19358 0.92080 0.80142 0.96852 1.21108 1.39364 1.07514 0.89888 0.90325 1.24785 0.95192 0.97557 0.95144 1.69885 1.44496 1.26834 1.12011 0.86806 0.80401 0.80516 0.81924 1.19893 1.20988 1.18345 1.21517 1.01218 0.91153 1.11617 0.92932 0.90825 0.91150 0.90584 0.92514 0.92468 0.85172 0.82787 0.90027 0.90444 0.77313 0.77474 0.95860 0.96370 0.92329 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.19 59.85 0.61 1.12 16 2 N -0.63 -4.66 3.39 -187.35 -0.64 -5.29 16 3 C 0.09 0.44 9.44 59.85 0.56 1.01 16 4 C 0.25 2.36 6.58 -83.61 -0.55 1.81 16 5 C -0.25 -2.20 9.38 -39.24 -0.37 -2.57 16 6 C 0.14 1.41 11.17 -17.61 -0.20 1.21 16 7 N -0.51 -6.57 10.27 -9.57 -0.10 -6.67 16 8 C 0.15 1.91 6.14 -82.64 -0.51 1.40 16 9 C 0.19 2.75 5.98 -5.19 -0.03 2.72 16 10 N -0.75 -11.86 5.55 -66.41 -0.37 -12.22 16 11 C 0.70 14.46 8.57 -86.92 -0.74 13.71 16 12 O -0.60 -14.77 16.34 5.29 0.09 -14.68 16 13 N -0.72 -15.57 5.55 -66.41 -0.37 -15.94 16 14 C 0.24 6.10 4.50 -5.20 -0.02 6.08 16 15 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16 16 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 23 C -0.23 -2.45 8.87 -39.25 -0.35 -2.79 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.46 6.26 -51.93 -0.33 0.14 16 26 H 0.07 0.29 7.92 -51.93 -0.41 -0.12 16 27 H 0.08 0.23 7.79 -51.93 -0.40 -0.17 16 28 H 0.06 0.25 8.00 -51.92 -0.42 -0.17 16 29 H 0.06 0.26 7.98 -51.93 -0.41 -0.16 16 30 H 0.13 0.85 6.89 -52.49 -0.36 0.48 16 31 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.39 5.46 8.48 -40.82 -0.35 5.11 16 35 H 0.39 7.49 8.34 -40.82 -0.34 7.15 16 36 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.14 1.28 6.28 -52.49 -0.33 0.95 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -35.11 330.65 -7.71 -42.82 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.38 Total: 5.76 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -2.03 Total: 10.25 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.70 Total: -66.37 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.11 -7.71 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds