Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39029 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.39122 * 119.63988 * 4.99438 * 4 2 1 6 6 C 1.39503 * 118.92521 * 179.97438 * 5 4 2 7 7 C 1.48166 * 120.88120 * 179.97438 * 6 5 4 8 8 O 1.21520 * 119.99628 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00350 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99922 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46852 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.36944 * 120.00096 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00243 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47373 * 90.00217 * 17 15 13 19 19 H 1.48500 * 109.47099 * 210.00236 * 17 15 13 20 20 H 1.48497 * 109.46909 * 330.00004 * 17 15 13 21 21 C 1.40013 * 118.24006 * 0.02562 * 6 5 4 22 22 C 1.37947 * 119.17440 * 359.97438 * 21 6 5 23 23 N 1.31918 * 121.00159 * 359.74195 * 22 21 6 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 29 29 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 30 30 H 1.07996 * 120.53777 * 0.02562 * 5 4 2 31 31 H 0.96998 * 119.99374 * 0.02562 * 9 7 6 32 32 H 1.08995 * 109.46708 * 299.99657 * 10 9 7 33 33 H 1.08996 * 109.47103 * 60.00307 * 10 9 7 34 34 H 1.09003 * 109.47155 * 299.99715 * 11 10 9 35 35 H 1.08998 * 109.47064 * 59.99721 * 11 10 9 36 36 H 0.97002 * 120.00416 * 0.02562 * 12 11 10 37 37 H 0.96991 * 120.00317 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.41452 * 180.02562 * 21 6 5 39 39 H 1.08002 * 119.49931 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4610 -2.4021 -0.1063 6 6 2.1736 -3.6014 -0.1059 7 6 1.4730 -4.9023 -0.2158 8 8 0.2617 -4.9341 -0.3084 9 7 2.1789 -6.0504 -0.2131 10 6 1.4861 -7.3366 -0.3223 11 6 2.5114 -8.4720 -0.2955 12 7 1.8186 -9.7582 -0.4041 13 6 2.5361 -10.9246 -0.4023 14 1 3.6126 -10.8963 -0.3204 15 6 1.8796 -12.1434 -0.5047 16 7 0.5675 -12.1779 -0.6041 17 14 2.8581 -13.7345 -0.5015 18 1 3.0134 -14.2174 0.8942 19 1 2.1406 -14.7585 -1.3026 20 1 4.1983 -13.4926 -1.0936 21 6 3.5683 -3.5433 0.0022 22 6 4.1843 -2.3132 0.1032 23 7 3.4800 -1.1978 0.0940 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.4892 2.0973 0.0005 28 1 2.8242 1.3264 0.8899 29 1 2.8241 1.3265 -0.8900 30 1 0.3842 -2.4037 -0.1883 31 1 3.1457 -6.0249 -0.1388 32 1 0.7962 -7.4497 0.5139 33 1 0.9304 -7.3715 -1.2593 34 1 3.2011 -8.3586 -1.1320 35 1 3.0676 -8.4372 0.6412 36 1 0.8518 -9.7836 -0.4781 37 1 0.1088 -13.0295 -0.6760 38 1 4.1547 -4.4503 0.0057 39 1 5.2599 -2.2622 0.1873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134596781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 28.848795 kcal Electronic energy + Delta-G solvation = -20363.133080 eV Core-core repulsion = 17113.632556 eV Total energy + Delta-G solvation = -3249.500524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78488 -39.23078 -36.76272 -35.75717 -33.94956 -32.80525 -31.24803 -30.62952 -28.66808 -27.78177 -25.67749 -24.52509 -23.15307 -22.37809 -21.51122 -20.26415 -18.33144 -17.30872 -16.95071 -16.14023 -15.90166 -15.71076 -15.45700 -15.32851 -14.59746 -14.43835 -14.32978 -13.98017 -13.68042 -13.38087 -13.20926 -12.93600 -12.88832 -12.61295 -12.42413 -11.91157 -11.50012 -11.12860 -10.84823 -10.82014 -10.33143 -10.27845 -10.10940 -9.93627 -9.79796 -9.60819 -9.02762 -8.87076 -7.87135 -7.01015 -5.80729 -3.11687 0.65068 1.07060 2.56797 2.90908 3.12338 3.41860 3.46775 3.48752 3.77185 4.26254 4.47100 4.59081 4.60693 4.80608 4.86338 4.97081 4.98384 5.04376 5.31802 5.34176 5.44701 5.48609 5.50106 5.51555 5.61718 5.74492 5.91943 5.94979 6.11340 6.18976 6.42042 6.56333 6.67446 6.69542 7.01761 7.51487 7.64864 7.84627 8.18314 8.36798 9.48086 10.02452 10.37127 11.41829 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047958 B = 0.002574 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.705420 B =10874.980009 C =11426.506209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.619 5.619 3 C 0.107 3.893 4 C 0.396 3.604 5 C -0.180 4.180 6 C -0.041 4.041 7 C 0.553 3.447 8 O -0.532 6.532 9 N -0.712 5.712 10 C 0.110 3.890 11 C 0.144 3.856 12 N -0.729 5.729 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.205 4.205 22 C 0.146 3.854 23 N -0.530 5.530 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.145 0.855 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.137 0.863 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 26.872 1.632 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.333 5.333 3 C -0.036 4.036 4 C 0.162 3.838 5 C -0.206 4.206 6 C -0.052 4.052 7 C 0.339 3.661 8 O -0.409 6.409 9 N -0.363 5.363 10 C -0.013 4.013 11 C 0.016 3.984 12 N -0.375 5.375 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.579 5.579 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.229 4.229 22 C -0.011 4.011 23 N -0.248 5.248 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.155 0.845 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.216 27.649 1.619 28.016 hybrid contribution 0.252 -1.739 -0.051 1.758 sum 4.468 25.910 1.568 26.340 Atomic orbital electron populations 1.21787 0.78106 1.03287 1.01871 1.46200 1.05207 1.02927 1.79013 1.21497 0.96400 0.83626 1.02054 1.18197 0.88279 0.85710 0.91617 1.21542 1.01763 0.90299 1.07004 1.20123 0.93736 0.93442 0.97904 1.18179 0.86988 0.83656 0.77289 1.90781 1.13520 1.87396 1.49187 1.45832 1.10910 1.06039 1.73565 1.21650 0.96064 0.80915 1.02714 1.20759 0.93511 0.85643 0.98475 1.42185 1.06648 0.99566 1.89062 1.19190 0.91101 0.84146 1.43089 0.90995 1.24790 0.95682 0.97808 1.02589 1.69666 1.06394 1.25092 1.56709 0.86139 0.78830 0.83392 0.77490 1.21615 1.21687 1.20691 1.22029 0.93847 1.00019 1.06963 1.22358 0.99695 0.86394 0.92664 1.67032 1.06075 1.32358 1.19363 0.92702 0.90863 0.90814 0.91259 0.92397 0.92588 0.83732 0.76385 0.90969 0.90975 0.95690 0.95696 0.77978 0.93342 0.84476 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.02 59.85 0.60 1.21 16 2 N -0.62 -5.62 3.39 -189.68 -0.64 -6.27 16 3 C 0.11 0.75 10.18 59.85 0.61 1.36 16 4 C 0.40 4.50 7.37 -155.07 -1.14 3.36 16 5 C -0.18 -2.19 8.75 -38.78 -0.34 -2.53 16 6 C -0.04 -0.51 5.90 -104.68 -0.62 -1.13 16 7 C 0.55 8.33 7.80 -12.18 -0.10 8.23 16 8 O -0.53 -9.88 16.44 5.35 0.09 -9.79 16 9 N -0.71 -9.91 5.51 -61.15 -0.34 -10.24 16 10 C 0.11 1.88 5.79 -4.04 -0.02 1.86 16 11 C 0.14 2.79 6.37 -4.05 -0.03 2.77 16 12 N -0.73 -18.46 5.60 -59.91 -0.34 -18.79 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 17 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.21 -2.02 9.61 -39.02 -0.37 -2.39 16 22 C 0.15 1.37 11.16 -17.62 -0.20 1.17 16 23 N -0.53 -5.95 9.54 -12.48 -0.12 -6.07 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.33 7.92 -51.93 -0.41 -0.09 16 26 H 0.07 0.52 6.39 -51.93 -0.33 0.19 16 27 H 0.07 0.31 7.79 -51.93 -0.40 -0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.15 1.72 5.95 -52.49 -0.31 1.41 16 31 H 0.40 4.37 6.61 -40.82 -0.27 4.10 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.39 10.35 7.67 -40.82 -0.31 10.03 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 38 H 0.14 1.01 6.53 -52.49 -0.34 0.66 16 39 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -34.46 332.92 -7.80 -42.25 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.31 Total: 7.65 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.85 Total: 6.51 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.71 Total: -68.87 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.46 -7.80 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134596781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.102 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds