Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39029 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.39122 * 119.63988 * 4.99438 * 4 2 1 6 6 C 1.39503 * 118.92521 * 179.97438 * 5 4 2 7 7 C 1.48166 * 120.88120 * 179.97438 * 6 5 4 8 8 O 1.21520 * 119.99628 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00350 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99922 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46852 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.47163 * 179.97438 * 11 10 9 13 13 C 1.36944 * 120.00096 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00243 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00014 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47373 * 90.00217 * 17 15 13 19 19 H 1.48500 * 109.47099 * 210.00236 * 17 15 13 20 20 H 1.48497 * 109.46909 * 330.00004 * 17 15 13 21 21 C 1.40013 * 118.24006 * 0.02562 * 6 5 4 22 22 C 1.37947 * 119.17440 * 359.97438 * 21 6 5 23 23 N 1.31918 * 121.00159 * 359.74195 * 22 21 6 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 29 29 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 30 30 H 1.07996 * 120.53777 * 0.02562 * 5 4 2 31 31 H 0.96998 * 119.99374 * 0.02562 * 9 7 6 32 32 H 1.08995 * 109.46708 * 299.99657 * 10 9 7 33 33 H 1.08996 * 109.47103 * 60.00307 * 10 9 7 34 34 H 1.09003 * 109.47155 * 299.99715 * 11 10 9 35 35 H 1.08998 * 109.47064 * 59.99721 * 11 10 9 36 36 H 0.97002 * 120.00416 * 0.02562 * 12 11 10 37 37 H 0.96991 * 120.00317 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.41452 * 180.02562 * 21 6 5 39 39 H 1.08002 * 119.49931 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4610 -2.4021 -0.1063 6 6 2.1736 -3.6014 -0.1059 7 6 1.4730 -4.9023 -0.2158 8 8 0.2617 -4.9341 -0.3084 9 7 2.1789 -6.0504 -0.2131 10 6 1.4861 -7.3366 -0.3223 11 6 2.5114 -8.4720 -0.2955 12 7 1.8186 -9.7582 -0.4041 13 6 2.5361 -10.9246 -0.4023 14 1 3.6126 -10.8963 -0.3204 15 6 1.8796 -12.1434 -0.5047 16 7 0.5675 -12.1779 -0.6041 17 14 2.8581 -13.7345 -0.5015 18 1 3.0134 -14.2174 0.8942 19 1 2.1406 -14.7585 -1.3026 20 1 4.1983 -13.4926 -1.0936 21 6 3.5683 -3.5433 0.0022 22 6 4.1843 -2.3132 0.1032 23 7 3.4800 -1.1978 0.0940 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.4892 2.0973 0.0005 28 1 2.8242 1.3264 0.8899 29 1 2.8241 1.3265 -0.8900 30 1 0.3842 -2.4037 -0.1883 31 1 3.1457 -6.0249 -0.1388 32 1 0.7962 -7.4497 0.5139 33 1 0.9304 -7.3715 -1.2593 34 1 3.2011 -8.3586 -1.1320 35 1 3.0676 -8.4372 0.6412 36 1 0.8518 -9.7836 -0.4781 37 1 0.1088 -13.0295 -0.6760 38 1 4.1547 -4.4503 0.0057 39 1 5.2599 -2.2622 0.1873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134596781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 4.097530 kcal Electronic energy + Delta-G solvation = -20364.206376 eV Core-core repulsion = 17113.632556 eV Total energy + Delta-G solvation = -3250.573819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69846 -40.34269 -37.46552 -37.35850 -35.59994 -33.83969 -33.00630 -31.45935 -29.64950 -29.02185 -26.45242 -25.96884 -24.59905 -23.19555 -23.06162 -21.34760 -19.48563 -19.07180 -17.90941 -17.01554 -16.94599 -16.78869 -16.58033 -16.40821 -16.26227 -15.44852 -15.28844 -15.12982 -15.02774 -14.94103 -14.51431 -14.24946 -13.46652 -13.15609 -13.12737 -13.08263 -13.03046 -12.67781 -12.61173 -12.49121 -12.08035 -11.87381 -11.43706 -11.12425 -10.98883 -10.79425 -10.50412 -10.23399 -9.06308 -8.57616 -7.96416 -5.27879 -0.28271 0.29194 1.49258 1.51657 1.60001 1.81070 1.81169 2.04434 2.57845 2.91450 3.37978 3.45177 3.59965 3.91092 3.95185 4.06265 4.14267 4.15556 4.20257 4.34959 4.44050 4.51760 4.56669 4.70688 4.78557 4.80293 4.85858 4.97156 4.99270 5.12410 5.12580 5.26826 5.47403 5.49748 5.94476 6.24351 6.29091 6.39359 7.03082 7.07464 7.30658 8.02324 8.25014 9.27280 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047958 B = 0.002574 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.705420 B =10874.980009 C =11426.506209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.106 3.894 4 C 0.386 3.614 5 C -0.197 4.197 6 C -0.056 4.056 7 C 0.554 3.446 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.126 3.874 11 C 0.148 3.852 12 N -0.747 5.747 13 C -0.247 4.247 14 H 0.085 0.915 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.980 3.020 18 H -0.286 1.286 19 H -0.297 1.297 20 H -0.265 1.265 21 C -0.199 4.199 22 C 0.149 3.851 23 N -0.542 5.542 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.137 0.863 31 H 0.418 0.582 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.165 0.835 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 28.062 1.879 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.336 5.336 3 C -0.036 4.036 4 C 0.151 3.849 5 C -0.223 4.223 6 C -0.067 4.067 7 C 0.342 3.658 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.002 3.998 11 C 0.022 3.978 12 N -0.391 5.391 13 C -0.378 4.378 14 H 0.102 0.898 15 C -0.271 4.271 16 N -0.622 5.622 17 Si 0.808 3.192 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.222 4.222 22 C -0.008 4.008 23 N -0.260 5.260 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.182 0.818 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.694 28.904 1.873 29.728 hybrid contribution -0.455 -1.965 -0.118 2.020 sum 6.240 26.939 1.755 27.708 Atomic orbital electron populations 1.21930 0.77010 1.04085 1.02380 1.46505 1.06122 1.02893 1.78125 1.21602 0.96967 0.83538 1.01494 1.18375 0.88569 0.86250 0.91667 1.21547 1.01598 0.90903 1.08259 1.19979 0.94956 0.91864 0.99873 1.18605 0.86561 0.84597 0.76083 1.90757 1.15528 1.88038 1.51191 1.45584 1.11677 1.04643 1.73114 1.21241 0.95372 0.81793 1.01410 1.20856 0.93693 0.83810 0.99467 1.42425 1.06330 1.01188 1.89148 1.19658 0.91847 0.85079 1.41240 0.89761 1.25685 0.96675 1.01353 1.03355 1.69836 1.08141 1.25448 1.58734 0.85052 0.77900 0.78935 0.77312 1.21302 1.22400 1.18960 1.22297 0.92601 1.01504 1.05818 1.22995 1.01241 0.85633 0.90904 1.67144 1.05958 1.33279 1.19643 0.92315 0.88310 0.91775 0.88539 0.92863 0.93141 0.84572 0.74314 0.92418 0.92436 0.94179 0.94169 0.79442 0.93923 0.81788 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 10.02 127.77 1.28 2.38 16 2 N -0.62 -10.68 3.39 -754.02 -2.56 -13.24 16 3 C 0.11 1.32 10.18 127.77 1.30 2.62 16 4 C 0.39 8.47 7.37 133.08 0.98 9.46 16 5 C -0.20 -4.81 8.75 22.79 0.20 -4.61 16 6 C -0.06 -1.35 5.90 -19.90 -0.12 -1.47 16 7 C 0.55 16.63 7.80 86.88 0.68 17.31 16 8 O -0.58 -22.06 16.44 -3.78 -0.06 -22.13 16 9 N -0.70 -18.62 5.51 -465.66 -2.57 -21.19 16 10 C 0.13 4.30 5.79 86.38 0.50 4.80 16 11 C 0.15 5.55 6.37 86.38 0.55 6.10 16 12 N -0.75 -37.69 5.60 -343.46 -1.92 -39.62 16 13 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 14 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 15 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 16 N -0.97 -59.85 13.06 21.65 0.28 -59.56 16 17 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C -0.20 -3.43 9.61 22.63 0.22 -3.21 16 22 C 0.15 2.39 11.16 84.61 0.94 3.33 16 23 N -0.54 -11.20 9.54 -193.40 -1.85 -13.05 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.70 7.92 -2.39 -0.02 0.68 16 26 H 0.06 0.92 6.39 -2.38 -0.02 0.91 16 27 H 0.10 0.64 7.79 -2.39 -0.02 0.62 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.14 3.43 5.95 -2.91 -0.02 3.42 16 31 H 0.42 8.08 6.61 -92.71 -0.61 7.46 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 37 H 0.25 15.03 8.31 -92.72 -0.77 14.26 16 38 H 0.16 1.80 6.53 -2.91 -0.02 1.78 16 39 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -74.81 332.92 0.95 -73.86 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.25 Total: 27.38 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 7.84 Total: 19.98 kcal Atomic # 7 Polarization: -138.05 SS G_CDS: -8.61 Total: -146.66 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.81 0.95 -73.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134596781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.954 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds