Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.47223 * 180.02562 * 14 13 12 16 16 C 1.36932 * 119.99757 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00228 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99952 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00527 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99982 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46867 * 89.99798 * 20 18 16 22 22 H 1.48493 * 109.47420 * 209.99893 * 20 18 16 23 23 H 1.48501 * 109.47092 * 330.00283 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 31 31 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 35 35 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 36 36 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 37 37 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 38 38 H 0.97001 * 119.99887 * 359.97438 * 15 14 13 39 39 H 0.96993 * 120.00457 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 7 5.5610 -5.4435 3.3045 16 6 6.3675 -6.5350 3.4864 17 1 6.7412 -7.0788 2.6314 18 6 6.7048 -6.9426 4.7697 19 7 7.4795 -7.9921 4.9447 20 14 6.0590 -6.0016 6.2486 21 1 4.7592 -6.5799 6.6742 22 1 7.0344 -6.1022 7.3638 23 1 5.8701 -4.5747 5.8834 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0353 0.4992 -2.5825 31 1 1.9455 -0.8197 -4.4412 32 1 3.8973 -3.4038 -1.8458 33 1 4.2820 -3.8387 -0.0951 34 1 4.8305 -2.9748 2.5372 35 1 3.3959 -4.0277 2.5799 36 1 4.6776 -5.8188 1.4398 37 1 6.1118 -4.7653 1.3974 38 1 5.2251 -4.9552 4.0724 39 1 7.7149 -8.2772 5.8414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148051811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 41.498233 kcal Electronic energy + Delta-G solvation = -21006.638285 eV Core-core repulsion = 17757.686282 eV Total energy + Delta-G solvation = -3248.952003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13445 -38.98606 -37.73653 -35.76194 -33.92975 -32.17118 -31.44479 -31.19937 -28.18100 -27.96292 -25.54654 -24.79816 -23.24135 -21.88488 -21.40042 -20.62428 -18.25174 -17.61560 -17.28278 -16.85908 -15.71335 -15.45162 -15.16860 -15.15227 -14.88828 -14.41947 -14.18140 -14.10342 -13.73792 -13.47311 -13.43357 -12.72426 -12.69996 -12.61890 -12.34697 -12.05697 -11.56069 -11.48555 -10.93742 -10.84051 -10.33365 -10.15298 -9.91246 -9.66157 -9.60480 -9.56808 -8.99447 -8.84134 -8.70398 -7.29409 -5.79180 -3.16522 0.36009 0.70353 2.83775 3.14313 3.35660 3.39348 3.43102 3.46920 3.58643 3.95403 4.37651 4.49365 4.57448 4.58661 4.78570 4.88592 4.97317 5.13514 5.15955 5.16644 5.21880 5.38762 5.46222 5.52989 5.54749 5.61514 5.68075 5.73411 5.99584 6.07425 6.40929 6.48851 6.60804 6.65151 6.88547 7.49512 7.57934 7.94604 8.32510 8.38987 9.16816 9.89077 10.07478 11.38725 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.003371 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.635710 B = 8304.744814 C = 9106.106286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.495 5.495 3 C 0.035 3.965 4 C 0.193 3.807 5 C -0.216 4.216 6 C 0.127 3.873 7 N -0.489 5.489 8 C 0.141 3.859 9 C -0.165 4.165 10 C 0.555 3.445 11 O -0.498 6.498 12 N -0.723 5.723 13 C 0.111 3.889 14 C 0.148 3.852 15 N -0.752 5.752 16 C -0.248 4.248 17 H 0.092 0.908 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.071 0.929 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.137 0.863 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.363 0.637 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 18.880 -17.033 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.215 5.215 3 C -0.112 4.112 4 C 0.089 3.911 5 C -0.238 4.238 6 C -0.029 4.029 7 N -0.198 5.198 8 C -0.018 4.018 9 C -0.172 4.172 10 C 0.340 3.660 11 O -0.372 6.372 12 N -0.377 5.377 13 C -0.013 4.013 14 C 0.020 3.980 15 N -0.399 5.399 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.201 1.201 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.232 0.768 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.196 0.804 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.967 18.456 -16.596 28.480 hybrid contribution -0.803 1.175 0.713 1.592 sum -14.770 19.631 -15.883 29.254 Atomic orbital electron populations 1.22444 0.84987 1.03041 1.00899 1.59100 1.08555 1.14204 1.39644 1.22423 1.01363 0.86520 1.00857 1.19086 0.91267 0.91639 0.89127 1.22730 1.04246 1.03057 0.93798 1.22768 0.91004 0.89607 0.99536 1.67713 1.13261 1.14840 1.23996 1.23098 0.94763 0.97281 0.86671 1.21184 1.02343 0.98189 0.95455 1.17746 0.79424 0.80767 0.88083 1.90851 1.51831 1.53596 1.40934 1.45853 1.51392 1.30682 1.09766 1.21573 0.99585 0.97707 0.82391 1.20745 0.95564 0.92655 0.89058 1.42529 1.61026 1.35011 1.01316 1.19013 1.21806 1.02834 0.94146 0.89069 1.24670 0.99495 0.97684 0.97074 1.69696 1.40136 1.26663 1.21485 0.86545 0.78538 0.79892 0.83586 1.20918 1.21611 1.20139 0.91065 0.95228 0.90253 0.90252 0.91048 0.95260 0.84472 0.82318 0.81840 0.76833 0.91295 0.91271 0.94856 0.94907 0.80379 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.34 60.07 0.56 0.84 16 2 N -0.50 -5.43 3.08 -186.40 -0.57 -6.00 16 3 C 0.03 0.30 9.38 60.06 0.56 0.87 16 4 C 0.19 2.08 4.73 -83.40 -0.39 1.68 16 5 C -0.22 -1.75 8.65 -39.28 -0.34 -2.09 16 6 C 0.13 1.02 11.15 -17.57 -0.20 0.82 16 7 N -0.49 -4.96 10.34 -13.01 -0.13 -5.09 16 8 C 0.14 1.42 10.71 -17.16 -0.18 1.24 16 9 C -0.17 -1.94 5.91 -104.66 -0.62 -2.56 16 10 C 0.56 7.94 7.77 -12.50 -0.10 7.85 16 11 O -0.50 -8.79 15.16 5.28 0.08 -8.71 16 12 N -0.72 -9.53 5.51 -61.38 -0.34 -9.87 16 13 C 0.11 1.79 5.79 -4.04 -0.02 1.76 16 14 C 0.15 2.74 6.37 -4.04 -0.03 2.71 16 15 N -0.75 -17.90 5.41 -59.90 -0.32 -18.22 16 16 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 20 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.19 7.18 -51.93 -0.37 -0.18 16 26 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.20 7.40 -51.93 -0.38 -0.19 16 30 H 0.14 0.79 7.16 -52.49 -0.38 0.42 16 31 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.16 1.27 6.42 -52.49 -0.34 0.93 16 33 H 0.40 4.10 6.54 -40.82 -0.27 3.83 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 327.48 15.07 4.93 4.93 Total: -1.00 -35.09 327.48 -6.66 -41.75 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.36 Total: 6.17 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.01 Total: 6.03 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -0.60 Total: -67.71 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.09 -6.66 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148051811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.252 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds