Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.47223 * 180.02562 * 14 13 12 16 16 C 1.36932 * 119.99757 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00228 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99952 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00527 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99982 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46867 * 89.99798 * 20 18 16 22 22 H 1.48493 * 109.47420 * 209.99893 * 20 18 16 23 23 H 1.48501 * 109.47092 * 330.00283 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 31 31 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 35 35 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 36 36 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 37 37 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 38 38 H 0.97001 * 119.99887 * 359.97438 * 15 14 13 39 39 H 0.96993 * 120.00457 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 7 5.5610 -5.4435 3.3045 16 6 6.3675 -6.5350 3.4864 17 1 6.7412 -7.0788 2.6314 18 6 6.7048 -6.9426 4.7697 19 7 7.4795 -7.9921 4.9447 20 14 6.0590 -6.0016 6.2486 21 1 4.7592 -6.5799 6.6742 22 1 7.0344 -6.1022 7.3638 23 1 5.8701 -4.5747 5.8834 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0353 0.4992 -2.5825 31 1 1.9455 -0.8197 -4.4412 32 1 3.8973 -3.4038 -1.8458 33 1 4.2820 -3.8387 -0.0951 34 1 4.8305 -2.9748 2.5372 35 1 3.3959 -4.0277 2.5799 36 1 4.6776 -5.8188 1.4398 37 1 6.1118 -4.7653 1.3974 38 1 5.2251 -4.9552 4.0724 39 1 7.7149 -8.2772 5.8414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148051811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = 14.830329 kcal Electronic energy + Delta-G solvation = -21007.794693 eV Core-core repulsion = 17757.686282 eV Total energy + Delta-G solvation = -3250.108410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91668 -40.05631 -38.44356 -37.36945 -35.48115 -33.61123 -32.67975 -32.11028 -29.72760 -28.60186 -26.39897 -25.77726 -24.78037 -23.20105 -22.47461 -21.70156 -19.88952 -18.91887 -18.06844 -17.72259 -16.84524 -16.73122 -16.21315 -16.13206 -15.89745 -15.68100 -15.47522 -15.15317 -14.99468 -14.72526 -14.45732 -14.35236 -13.42646 -13.37438 -13.30397 -13.17044 -13.01920 -12.73798 -12.69678 -12.57055 -12.07345 -11.82175 -11.30849 -11.02662 -10.64284 -10.52203 -10.33502 -10.04787 -9.39316 -9.35503 -8.04479 -5.39772 -0.40215 0.01304 1.40051 1.41795 1.49067 1.90124 2.03960 2.47662 2.68733 2.77161 3.27367 3.29809 3.64102 3.79977 3.81693 3.86230 3.98393 4.10540 4.22513 4.29459 4.33557 4.47588 4.52969 4.53762 4.57550 4.60852 4.88654 4.90869 5.00355 5.07757 5.11483 5.37319 5.42971 5.73475 5.85384 6.18539 6.19509 6.54413 6.81303 7.04156 7.25403 7.78668 7.96513 9.16425 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.003371 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.635710 B = 8304.744814 C = 9106.106286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.525 5.525 3 C 0.037 3.963 4 C 0.183 3.817 5 C -0.208 4.208 6 C 0.133 3.867 7 N -0.508 5.508 8 C 0.144 3.856 9 C -0.190 4.190 10 C 0.557 3.443 11 O -0.538 6.538 12 N -0.714 5.714 13 C 0.128 3.872 14 C 0.149 3.851 15 N -0.759 5.759 16 C -0.238 4.238 17 H 0.064 0.936 18 C -0.060 4.060 19 N -0.981 5.981 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.254 1.254 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.165 0.835 31 H 0.194 0.806 32 H 0.179 0.821 33 H 0.411 0.589 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.367 0.633 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 20.947 -18.605 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.246 5.246 3 C -0.109 4.109 4 C 0.079 3.921 5 C -0.229 4.229 6 C -0.022 4.022 7 N -0.217 5.217 8 C -0.015 4.015 9 C -0.197 4.197 10 C 0.343 3.657 11 O -0.415 6.415 12 N -0.368 5.368 13 C 0.003 3.997 14 C 0.023 3.977 15 N -0.405 5.405 16 C -0.368 4.368 17 H 0.082 0.918 18 C -0.252 4.252 19 N -0.631 5.631 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.178 1.178 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.183 0.817 31 H 0.211 0.789 32 H 0.196 0.804 33 H 0.249 0.751 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.200 0.800 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.526 20.548 -18.231 31.554 hybrid contribution -0.346 0.549 1.029 1.217 sum -15.872 21.097 -17.202 31.511 Atomic orbital electron populations 1.22443 0.83894 1.02432 1.02372 1.59035 1.09768 1.15278 1.40556 1.22413 1.00273 0.85902 1.02312 1.19321 0.91073 0.91387 0.90298 1.22946 1.03986 1.03613 0.92396 1.23383 0.89325 0.88369 1.01161 1.67799 1.14265 1.15978 1.23676 1.23291 0.94479 0.97397 0.86311 1.21066 1.04558 0.99870 0.94196 1.18147 0.78535 0.80121 0.88884 1.90822 1.53417 1.54855 1.42396 1.45677 1.51266 1.30746 1.09147 1.21187 0.98487 0.96166 0.83841 1.20847 0.96402 0.93850 0.86642 1.42547 1.60411 1.33947 1.03593 1.19019 1.21201 1.03317 0.93304 0.91821 1.25481 1.00403 0.98967 1.00317 1.69864 1.42302 1.28860 1.22067 0.85451 0.77694 0.79583 0.79347 1.20339 1.22016 1.17831 0.92571 0.92825 0.89776 0.89767 0.92728 0.92895 0.81705 0.78913 0.80366 0.75108 0.92143 0.92016 0.93975 0.94072 0.80026 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.34 127.69 1.19 1.73 16 2 N -0.53 -10.93 3.08 -743.65 -2.29 -13.22 16 3 C 0.04 0.59 9.38 127.69 1.20 1.79 16 4 C 0.18 3.65 4.73 39.05 0.18 3.84 16 5 C -0.21 -2.71 8.65 22.47 0.19 -2.52 16 6 C 0.13 1.70 11.15 84.53 0.94 2.64 16 7 N -0.51 -9.08 10.34 -195.07 -2.02 -11.09 16 8 C 0.14 2.67 10.71 85.03 0.91 3.58 16 9 C -0.19 -4.29 5.91 -19.89 -0.12 -4.41 16 10 C 0.56 15.71 7.77 86.67 0.67 16.38 16 11 O -0.54 -19.10 15.16 -4.03 -0.06 -19.16 16 12 N -0.71 -18.17 5.51 -466.35 -2.57 -20.74 16 13 C 0.13 4.00 5.79 86.38 0.50 4.50 16 14 C 0.15 5.37 6.37 86.38 0.55 5.92 16 15 N -0.76 -35.44 5.41 -343.44 -1.86 -37.29 16 16 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 17 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 18 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 19 N -0.98 -62.86 13.97 21.65 0.30 -62.55 16 20 Si 0.95 45.87 27.73 68.60 1.90 47.78 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.55 7.18 -2.39 -0.02 0.53 16 26 H 0.08 1.18 8.12 -2.38 -0.02 1.16 16 27 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.57 7.40 -2.39 -0.02 0.55 16 30 H 0.17 1.18 7.16 -2.91 -0.02 1.16 16 31 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.18 2.48 6.42 -2.91 -0.02 2.46 16 33 H 0.41 7.94 6.54 -92.71 -0.61 7.33 16 34 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.37 16.59 5.53 -92.71 -0.51 16.08 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -76.51 327.48 0.89 -75.63 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.10 Total: 22.92 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 7.58 Total: 17.74 kcal Atomic # 7 Polarization: -136.47 SS G_CDS: -8.43 Total: -144.90 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Total: -76.51 0.89 -75.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148051811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.458 kcal (2) G-P(sol) polarization free energy of solvation -76.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds