Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00305 * 2 1 4 4 C 1.38264 * 111.00089 * 123.95384 * 2 1 3 5 5 N 1.32432 * 119.82504 * 304.66695 * 4 2 1 6 6 C 1.31842 * 121.77663 * 179.72538 * 5 4 2 7 7 C 1.38380 * 121.21949 * 0.58804 * 6 5 4 8 8 C 1.38336 * 119.50438 * 359.42137 * 7 6 5 9 9 C 1.39978 * 118.36492 * 0.27857 * 8 7 6 10 10 C 1.47432 * 120.60737 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00078 * 174.53175 * 10 9 8 12 12 N 1.34773 * 119.99994 * 354.52503 * 10 9 8 13 13 C 1.46500 * 120.00089 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47027 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.36942 * 120.00004 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00021 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99814 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00284 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47064 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47730 * 119.99653 * 20 18 16 23 23 H 1.48505 * 109.47127 * 240.00171 * 20 18 16 24 24 H 1.09001 * 109.47609 * 296.04981 * 1 2 3 25 25 H 1.09005 * 109.47347 * 56.04983 * 1 2 3 26 26 H 1.08998 * 109.47392 * 176.04490 * 1 2 3 27 27 H 1.08994 * 109.47175 * 188.82106 * 3 2 1 28 28 H 1.09004 * 109.46585 * 308.81867 * 3 2 1 29 29 H 1.09002 * 109.47246 * 68.81571 * 3 2 1 30 30 H 1.08001 * 119.39845 * 180.29114 * 6 5 4 31 31 H 1.08001 * 120.25030 * 179.70314 * 7 6 5 32 32 H 1.07997 * 120.82027 * 180.29813 * 8 7 6 33 33 H 0.97009 * 120.00341 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47090 * 300.00019 * 13 12 10 35 35 H 1.08997 * 109.47472 * 60.00580 * 13 12 10 36 36 H 1.08994 * 109.47159 * 300.00127 * 14 13 12 37 37 H 1.08998 * 109.47132 * 60.00176 * 14 13 12 38 38 H 0.96998 * 120.00037 * 359.97438 * 15 14 13 39 39 H 0.97003 * 119.99527 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9645 -0.7209 1.0707 5 7 1.5904 -0.4114 2.3028 6 6 2.0347 -1.0763 3.3510 7 6 2.9259 -2.1255 3.2099 8 6 3.3509 -2.4930 1.9458 9 6 2.8625 -1.7780 0.8459 10 6 3.2832 -2.1273 -0.5233 11 8 2.7777 -1.5662 -1.4764 12 7 4.2280 -3.0683 -0.7186 13 6 4.6464 -3.4150 -2.0791 14 6 5.7214 -4.5021 -2.0206 15 7 6.1403 -4.8483 -3.3811 16 6 7.0996 -5.8052 -3.5796 17 1 7.5477 -6.3043 -2.7331 18 6 7.4968 -6.1329 -4.8686 19 7 6.9510 -5.5243 -5.9002 20 14 8.8049 -7.4386 -5.1394 21 1 9.2554 -7.9676 -3.8269 22 1 8.2390 -8.5453 -5.9517 23 1 9.9608 -6.8404 -5.8546 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0737 1.3466 -0.1576 28 1 1.5242 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.7006 -0.7940 4.3385 31 1 3.2834 -2.6564 4.0798 32 1 4.0423 -3.3116 1.8107 33 1 4.6310 -3.5162 0.0417 34 1 3.7877 -3.7834 -2.6405 35 1 5.0502 -2.5304 -2.5716 36 1 6.5801 -4.1342 -1.4591 37 1 5.3173 -5.3866 -1.5283 38 1 5.7375 -4.4004 -4.1413 39 1 7.2284 -5.7535 -6.8010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151044193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = 40.127106 kcal Electronic energy + Delta-G solvation = -20963.728663 eV Core-core repulsion = 17714.717203 eV Total energy + Delta-G solvation = -3249.011460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.04428 -38.90464 -37.11238 -35.57070 -33.86466 -32.83052 -31.19100 -30.75160 -27.76250 -27.73088 -25.26807 -24.77232 -23.42044 -21.86677 -21.36552 -20.55423 -18.01360 -17.27795 -17.14443 -16.81886 -15.67284 -15.32833 -15.14799 -15.03797 -14.55388 -14.36701 -14.04380 -13.81460 -13.35040 -13.32245 -13.11675 -12.90869 -12.76703 -12.37419 -12.12477 -11.83058 -11.40754 -11.09920 -10.82532 -10.80278 -10.20783 -10.16793 -10.08424 -9.85286 -9.67384 -9.26240 -8.96114 -8.74494 -8.55311 -6.98713 -5.79243 -3.09914 0.42471 0.81829 2.90598 3.22548 3.42278 3.45558 3.47893 3.50074 3.64470 4.15426 4.44368 4.55145 4.59285 4.76316 4.83057 5.11681 5.19142 5.22788 5.37951 5.44867 5.51023 5.57870 5.61401 5.72006 5.75315 5.76224 5.81177 5.98158 6.05840 6.17805 6.52101 6.67577 6.72124 6.78299 7.08459 7.50309 7.66438 7.70099 8.38129 8.43892 9.49742 10.04803 10.39538 11.43392 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.003087 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.899548 B = 9068.518422 C = 9759.983099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.475 5.475 3 C 0.035 3.965 4 C 0.346 3.654 5 N -0.518 5.518 6 C 0.130 3.870 7 C -0.184 4.184 8 C -0.042 4.042 9 C -0.154 4.154 10 C 0.553 3.447 11 O -0.494 6.494 12 N -0.724 5.724 13 C 0.114 3.886 14 C 0.144 3.856 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.394 0.606 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 10.401 20.441 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.197 5.197 3 C -0.111 4.111 4 C 0.117 3.883 5 N -0.231 5.231 6 C -0.030 4.030 7 C -0.204 4.204 8 C -0.069 4.069 9 C -0.161 4.161 10 C 0.337 3.663 11 O -0.367 6.367 12 N -0.378 5.378 13 C -0.009 4.009 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.228 0.772 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.670 11.172 19.387 25.236 hybrid contribution 1.153 -1.197 0.602 1.767 sum -10.518 9.975 19.989 24.692 Atomic orbital electron populations 1.22350 0.85117 1.02623 1.01229 1.59891 1.09226 1.14680 1.35889 1.22360 1.01128 0.86659 1.00968 1.19839 0.90286 0.90971 0.87223 1.67870 1.26045 1.29593 0.99558 1.22758 0.92088 0.90831 0.97273 1.22089 1.00251 0.99832 0.98190 1.21856 0.96048 0.97183 0.91768 1.20872 1.01511 0.98772 0.94912 1.17738 0.80194 0.80297 0.88046 1.90862 1.53482 1.50683 1.41706 1.45878 1.41228 1.40850 1.09826 1.21554 0.98459 0.99070 0.81840 1.20757 0.93708 0.93939 0.89970 1.42200 1.47351 1.46952 1.00966 1.19237 1.13166 1.12864 0.92179 0.90997 1.24782 1.00361 1.00247 0.95480 1.69684 1.45520 1.44805 0.97801 0.86082 0.81141 0.81076 0.77638 1.20520 1.21779 1.21785 0.94196 0.90551 0.91597 0.91357 0.90394 0.94555 0.82419 0.83961 0.83885 0.77156 0.91202 0.91202 0.95859 0.95857 0.77966 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.39 60.06 0.56 0.94 16 2 N -0.47 -6.32 2.96 -188.75 -0.56 -6.88 16 3 C 0.04 0.40 9.56 60.06 0.57 0.97 16 4 C 0.35 4.47 5.35 -155.18 -0.83 3.64 16 5 N -0.52 -5.86 9.42 -12.20 -0.11 -5.98 16 6 C 0.13 1.07 11.16 -17.50 -0.20 0.87 16 7 C -0.18 -1.32 10.09 -39.49 -0.40 -1.71 16 8 C -0.04 -0.37 9.63 -38.89 -0.37 -0.75 16 9 C -0.15 -1.93 5.91 -104.64 -0.62 -2.55 16 10 C 0.55 8.45 7.75 -12.52 -0.10 8.35 16 11 O -0.49 -9.29 15.09 5.27 0.08 -9.22 16 12 N -0.72 -10.15 5.51 -61.38 -0.34 -10.49 16 13 C 0.11 1.98 5.79 -4.04 -0.02 1.96 16 14 C 0.14 2.82 6.37 -4.04 -0.03 2.79 16 15 N -0.73 -18.57 5.60 -59.91 -0.34 -18.91 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H 0.04 0.42 7.75 -51.93 -0.40 0.01 16 25 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 29 H 0.04 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.92 6.55 -52.49 -0.34 0.58 16 33 H 0.39 4.29 6.60 -40.82 -0.27 4.02 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.39 10.43 7.67 -40.82 -0.31 10.12 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -34.52 332.68 -7.73 -42.24 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.50 Total: 7.41 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.67 Total: 7.12 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -0.62 Total: -69.82 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.52 -7.73 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151044193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.371 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds