Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00305 * 2 1 4 4 C 1.38264 * 111.00089 * 123.95384 * 2 1 3 5 5 N 1.32432 * 119.82504 * 304.66695 * 4 2 1 6 6 C 1.31842 * 121.77663 * 179.72538 * 5 4 2 7 7 C 1.38380 * 121.21949 * 0.58804 * 6 5 4 8 8 C 1.38336 * 119.50438 * 359.42137 * 7 6 5 9 9 C 1.39978 * 118.36492 * 0.27857 * 8 7 6 10 10 C 1.47432 * 120.60737 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00078 * 174.53175 * 10 9 8 12 12 N 1.34773 * 119.99994 * 354.52503 * 10 9 8 13 13 C 1.46500 * 120.00089 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47027 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47027 * 180.02562 * 14 13 12 16 16 C 1.36942 * 120.00004 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00021 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99814 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00284 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47064 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47730 * 119.99653 * 20 18 16 23 23 H 1.48505 * 109.47127 * 240.00171 * 20 18 16 24 24 H 1.09001 * 109.47609 * 296.04981 * 1 2 3 25 25 H 1.09005 * 109.47347 * 56.04983 * 1 2 3 26 26 H 1.08998 * 109.47392 * 176.04490 * 1 2 3 27 27 H 1.08994 * 109.47175 * 188.82106 * 3 2 1 28 28 H 1.09004 * 109.46585 * 308.81867 * 3 2 1 29 29 H 1.09002 * 109.47246 * 68.81571 * 3 2 1 30 30 H 1.08001 * 119.39845 * 180.29114 * 6 5 4 31 31 H 1.08001 * 120.25030 * 179.70314 * 7 6 5 32 32 H 1.07997 * 120.82027 * 180.29813 * 8 7 6 33 33 H 0.97009 * 120.00341 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.47090 * 300.00019 * 13 12 10 35 35 H 1.08997 * 109.47472 * 60.00580 * 13 12 10 36 36 H 1.08994 * 109.47159 * 300.00127 * 14 13 12 37 37 H 1.08998 * 109.47132 * 60.00176 * 14 13 12 38 38 H 0.96998 * 120.00037 * 359.97438 * 15 14 13 39 39 H 0.97003 * 119.99527 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9645 -0.7209 1.0707 5 7 1.5904 -0.4114 2.3028 6 6 2.0347 -1.0763 3.3510 7 6 2.9259 -2.1255 3.2099 8 6 3.3509 -2.4930 1.9458 9 6 2.8625 -1.7780 0.8459 10 6 3.2832 -2.1273 -0.5233 11 8 2.7777 -1.5662 -1.4764 12 7 4.2280 -3.0683 -0.7186 13 6 4.6464 -3.4150 -2.0791 14 6 5.7214 -4.5021 -2.0206 15 7 6.1403 -4.8483 -3.3811 16 6 7.0996 -5.8052 -3.5796 17 1 7.5477 -6.3043 -2.7331 18 6 7.4968 -6.1329 -4.8686 19 7 6.9510 -5.5243 -5.9002 20 14 8.8049 -7.4386 -5.1394 21 1 9.2554 -7.9676 -3.8269 22 1 8.2390 -8.5453 -5.9517 23 1 9.9608 -6.8404 -5.8546 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0737 1.3466 -0.1576 28 1 1.5242 1.9414 -0.8007 29 1 1.7790 1.8437 0.9582 30 1 1.7006 -0.7940 4.3385 31 1 3.2834 -2.6564 4.0798 32 1 4.0423 -3.3116 1.8107 33 1 4.6310 -3.5162 0.0417 34 1 3.7877 -3.7834 -2.6405 35 1 5.0502 -2.5304 -2.5716 36 1 6.5801 -4.1342 -1.4591 37 1 5.3173 -5.3866 -1.5283 38 1 5.7375 -4.4004 -4.1413 39 1 7.2284 -5.7535 -6.8010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151044193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 14.875919 kcal Electronic energy + Delta-G solvation = -20964.823636 eV Core-core repulsion = 17714.717203 eV Total energy + Delta-G solvation = -3250.106433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89148 -40.05978 -37.94089 -37.21498 -35.45201 -33.85089 -32.88671 -31.62607 -29.39613 -28.60789 -26.32127 -25.77961 -25.01236 -23.19024 -22.46847 -21.69778 -19.39750 -18.79562 -17.98920 -17.83169 -16.79479 -16.72574 -16.29168 -16.22578 -15.87619 -15.48233 -15.10968 -15.05995 -15.01111 -14.70975 -14.27455 -13.98915 -13.58853 -13.21760 -13.06571 -13.02785 -12.96476 -12.73425 -12.67515 -12.48189 -12.03189 -11.84375 -11.08007 -10.99330 -10.96787 -10.77821 -10.15698 -9.94122 -9.43535 -9.05394 -7.95777 -5.27210 -0.37494 0.12310 1.49511 1.50979 1.61042 1.92578 2.05004 2.58667 2.64483 2.77514 3.38743 3.43091 3.72408 3.83387 4.00115 4.05579 4.08209 4.19955 4.24973 4.34787 4.38096 4.49290 4.52711 4.61228 4.63566 4.84177 4.88166 4.94823 5.03776 5.08812 5.15433 5.39187 5.44791 5.50979 5.82436 6.23978 6.25124 6.56590 6.81217 7.29294 7.31312 8.03296 8.26151 9.28199 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.003087 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.899548 B = 9068.518422 C = 9759.983099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.502 5.502 3 C 0.041 3.959 4 C 0.327 3.673 5 N -0.536 5.536 6 C 0.130 3.870 7 C -0.168 4.168 8 C -0.037 4.037 9 C -0.181 4.181 10 C 0.553 3.447 11 O -0.540 6.540 12 N -0.711 5.711 13 C 0.132 3.868 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.246 4.246 17 H 0.084 0.916 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.979 3.021 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.294 1.294 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.194 0.806 31 H 0.185 0.815 32 H 0.169 0.831 33 H 0.412 0.588 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 9.460 23.769 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.225 5.225 3 C -0.105 4.105 4 C 0.099 3.901 5 N -0.249 5.249 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.064 4.064 9 C -0.188 4.188 10 C 0.339 3.661 11 O -0.416 6.416 12 N -0.366 5.366 13 C 0.008 3.992 14 C 0.023 3.977 15 N -0.391 5.391 16 C -0.378 4.378 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.221 1.221 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.202 0.798 32 H 0.186 0.814 33 H 0.250 0.750 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.045 10.218 22.803 27.320 hybrid contribution 0.915 -0.875 -0.249 1.290 sum -10.130 9.343 22.554 26.431 Atomic orbital electron populations 1.22299 0.84498 1.02087 1.01839 1.59851 1.10042 1.15410 1.37162 1.22303 1.00279 0.86372 1.01578 1.19910 0.90994 0.91419 0.87815 1.67896 1.26827 1.30622 0.99560 1.23494 0.91301 0.90314 0.97803 1.22533 0.98616 0.98890 0.98668 1.22197 0.95756 0.97025 0.91397 1.20716 1.03485 1.00527 0.94119 1.18223 0.79409 0.79448 0.89007 1.90832 1.55056 1.52280 1.43462 1.45626 1.41100 1.40836 1.08992 1.21109 0.97073 0.97590 0.83460 1.20851 0.94595 0.94951 0.87351 1.42448 1.47146 1.46640 1.02883 1.19701 1.12899 1.12621 0.92557 0.89766 1.25678 1.03038 1.02892 0.95407 1.69853 1.47482 1.46834 0.98008 0.84992 0.78098 0.78111 0.78027 1.18468 1.22118 1.22133 0.93641 0.89747 0.92687 0.92709 0.89487 0.93993 0.78954 0.79780 0.81359 0.75031 0.92918 0.92947 0.94373 0.94300 0.79481 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.39 127.69 1.20 2.10 16 2 N -0.50 -13.70 2.96 -751.07 -2.22 -15.93 16 3 C 0.04 0.95 9.56 127.69 1.22 2.18 16 4 C 0.33 8.33 5.35 133.64 0.72 9.04 16 5 N -0.54 -11.28 9.42 -192.52 -1.81 -13.09 16 6 C 0.13 1.68 11.16 84.73 0.95 2.63 16 7 C -0.17 -1.67 10.09 22.33 0.23 -1.44 16 8 C -0.04 -0.55 9.63 22.72 0.22 -0.33 16 9 C -0.18 -4.40 5.91 -19.88 -0.12 -4.52 16 10 C 0.55 17.00 7.75 86.67 0.67 17.67 16 11 O -0.54 -21.19 15.09 -4.04 -0.06 -21.25 16 12 N -0.71 -19.36 5.51 -466.36 -2.57 -21.93 16 13 C 0.13 4.62 5.79 86.38 0.50 5.12 16 14 C 0.15 5.66 6.37 86.38 0.55 6.22 16 15 N -0.75 -38.13 5.60 -343.45 -1.92 -40.06 16 16 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 19 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 20 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 25 H 0.08 1.70 8.07 -2.38 -0.02 1.68 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.76 8.04 -2.38 -0.02 1.74 16 29 H 0.04 0.89 7.90 -2.39 -0.02 0.87 16 30 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 31 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.17 1.49 6.55 -2.91 -0.02 1.47 16 33 H 0.41 8.03 6.60 -92.70 -0.61 7.42 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.37 20.69 7.67 -92.71 -0.71 19.98 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -76.59 332.68 0.90 -75.69 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.25 Total: 26.84 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.44 Total: 21.92 kcal Atomic # 7 Polarization: -142.65 SS G_CDS: -8.25 Total: -150.89 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.25 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.59 0.90 -75.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151044193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.568 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds