Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39068 * 120.00301 * 179.97438 * 2 1 3 5 5 C 1.39451 * 120.40197 * 359.97438 * 4 2 1 6 6 C 1.38224 * 118.43118 * 179.97438 * 5 4 2 7 7 C 1.39533 * 119.15777 * 359.97438 * 6 5 4 8 8 C 1.47845 * 119.63852 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99669 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47509 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47178 * 180.02562 * 12 11 10 14 14 C 1.36943 * 119.99816 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99662 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00125 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00266 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46736 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46915 * 120.00275 * 18 16 14 21 21 H 1.48495 * 109.47402 * 240.00641 * 18 16 14 22 22 N 1.32833 * 120.72633 * 0.02562 * 7 6 5 23 23 C 1.31323 * 121.71734 * 359.72400 * 22 7 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08002 * 120.78078 * 359.95664 * 5 4 2 31 31 H 1.08000 * 120.42378 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99497 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47072 * 300.00549 * 11 10 8 34 34 H 1.09002 * 109.46744 * 59.99933 * 11 10 8 35 35 H 1.09005 * 109.46878 * 300.00589 * 12 11 10 36 36 H 1.08999 * 109.47074 * 59.99385 * 12 11 10 37 37 H 0.96994 * 120.00199 * 359.97438 * 13 12 11 38 38 H 0.96999 * 119.99653 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.61977 * 180.26876 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2043 0.0005 5 6 1.4717 -2.4169 0.0016 6 6 2.2036 -3.5894 0.0016 7 6 3.5973 -3.5209 -0.0001 8 6 4.3907 -4.7684 -0.0007 9 8 3.8284 -5.8462 0.0007 10 7 5.7371 -4.7108 -0.0028 11 6 6.5233 -5.9470 -0.0029 12 6 8.0142 -5.6033 -0.0049 13 7 8.8002 -6.8395 -0.0055 14 6 10.1684 -6.7809 -0.0078 15 1 10.6678 -5.8233 -0.0087 16 6 10.9133 -7.9522 -0.0079 17 7 10.3045 -9.1192 -0.0063 18 14 12.7796 -7.8723 -0.0103 19 1 13.2141 -6.4523 -0.0112 20 1 13.3055 -8.5498 1.2020 21 1 13.3026 -8.5512 -1.2230 22 7 4.2190 -2.3471 -0.0011 23 6 3.5551 -1.2141 -0.0060 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3919 -2.4393 0.0028 31 1 1.7032 -4.5465 0.0028 32 1 6.1857 -3.8507 -0.0036 33 1 6.2860 -6.5285 0.8880 34 1 6.2833 -6.5301 -0.8920 35 1 8.2517 -5.0215 -0.8955 36 1 8.2538 -5.0203 0.8844 37 1 8.3516 -7.6995 -0.0044 38 1 10.8250 -9.9377 -0.0068 39 1 4.0952 -0.2789 -0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152822867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = 24.830106 kcal Electronic energy + Delta-G solvation = -20261.892076 eV Core-core repulsion = 17012.217288 eV Total energy + Delta-G solvation = -3249.674787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77743 -39.07450 -37.08212 -35.58097 -33.77361 -32.54167 -31.34215 -30.67668 -28.91985 -27.78171 -25.87744 -23.71386 -23.48430 -22.26146 -21.32758 -20.40267 -18.23385 -17.38615 -17.23137 -16.75020 -15.76709 -15.51323 -15.25218 -15.02650 -14.62999 -14.41255 -14.07484 -14.06328 -13.55785 -13.21388 -13.16508 -13.08804 -13.02546 -12.74430 -12.53945 -12.23935 -11.34876 -11.03363 -10.78771 -10.73882 -10.73717 -10.18288 -10.02187 -9.84023 -9.75155 -9.54945 -8.90699 -8.70466 -7.84634 -6.92324 -5.73796 -3.03913 0.71503 1.06457 2.51075 2.86655 3.37322 3.46401 3.51950 3.54289 3.87830 4.14896 4.38784 4.42874 4.51200 4.63139 4.75837 4.78924 4.90839 5.01635 5.07003 5.14184 5.17155 5.48302 5.57029 5.61423 5.62675 5.87880 5.87943 6.07088 6.14198 6.25996 6.56241 6.61962 6.80048 6.81424 6.87885 7.57794 7.72681 7.89451 8.43373 8.46162 9.55305 10.10921 10.46009 11.49018 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.002554 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.861845 B =10960.406511 C =11613.216954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.625 5.625 3 C 0.087 3.913 4 C 0.183 3.817 5 C -0.168 4.168 6 C -0.057 4.057 7 C 0.017 3.983 8 C 0.573 3.427 9 O -0.544 6.544 10 N -0.705 5.705 11 C 0.110 3.890 12 C 0.144 3.856 13 N -0.730 5.730 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 N -0.415 5.415 23 C 0.028 3.972 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.409 0.591 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 22.969 -0.080 32.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.335 5.335 3 C -0.056 4.056 4 C 0.077 3.923 5 C -0.198 4.198 6 C -0.078 4.078 7 C -0.123 4.123 8 C 0.358 3.642 9 O -0.422 6.422 10 N -0.355 5.355 11 C -0.014 4.014 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.371 4.371 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.580 5.580 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.125 5.125 23 C -0.139 4.139 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.811 22.395 -0.077 31.261 hybrid contribution 0.116 0.224 0.010 0.252 sum -21.696 22.619 -0.068 31.342 Atomic orbital electron populations 1.21715 0.78945 1.02936 1.01656 1.46251 1.05431 1.03148 1.78642 1.21804 0.97529 0.84455 1.01805 1.19092 0.92963 0.86631 0.93642 1.21038 1.00463 0.90404 1.07919 1.21880 0.93477 0.99391 0.93081 1.20861 0.91780 0.91704 1.07912 1.17723 0.82300 0.87356 0.76860 1.90783 1.71177 1.29113 1.51078 1.45755 1.05680 1.10867 1.73230 1.21612 0.91512 0.85650 1.02599 1.20758 0.87787 0.91274 0.98553 1.42205 1.03242 1.02384 1.89667 1.19256 0.82216 0.92736 1.42920 0.90960 1.24782 0.98130 0.95250 1.02892 1.69683 1.34188 0.96569 1.57532 0.86072 0.85444 0.77217 0.77175 1.20518 1.21833 1.21828 1.67363 1.40410 0.97663 1.07092 1.22377 0.89030 0.96689 1.05755 0.90444 0.92350 0.92353 0.92709 0.90800 0.91027 0.84436 0.83456 0.75572 0.91179 0.91168 0.95671 0.95669 0.78017 0.93477 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 9.42 59.85 0.56 0.90 16 2 N -0.62 -3.78 3.39 -187.38 -0.64 -4.42 16 3 C 0.09 0.33 10.17 59.85 0.61 0.93 16 4 C 0.18 1.60 6.57 -83.67 -0.55 1.05 16 5 C -0.17 -1.53 9.40 -39.13 -0.37 -1.89 16 6 C -0.06 -0.66 9.62 -39.10 -0.38 -1.04 16 7 C 0.02 0.24 6.74 -83.02 -0.56 -0.32 16 8 C 0.57 9.66 7.80 -12.33 -0.10 9.56 16 9 O -0.54 -10.71 16.31 5.31 0.09 -10.62 16 10 N -0.70 -11.55 5.54 -61.25 -0.34 -11.89 16 11 C 0.11 2.06 5.79 -4.05 -0.02 2.04 16 12 C 0.14 3.02 6.37 -4.05 -0.03 3.00 16 13 N -0.73 -19.25 5.60 -59.91 -0.34 -19.59 16 14 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 15 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 18 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 N -0.41 -5.28 9.52 -9.63 -0.09 -5.38 16 23 C 0.03 0.28 10.38 -17.31 -0.18 0.10 16 24 H 0.08 0.15 7.79 -51.93 -0.40 -0.25 16 25 H 0.06 0.21 7.97 -51.93 -0.41 -0.20 16 26 H 0.06 0.21 7.98 -51.93 -0.41 -0.20 16 27 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.26 6.19 -51.93 -0.32 -0.06 16 29 H 0.07 0.15 7.92 -51.93 -0.41 -0.26 16 30 H 0.14 0.89 6.85 -52.49 -0.36 0.53 16 31 H 0.15 1.65 7.63 -52.49 -0.40 1.25 16 32 H 0.41 6.00 7.79 -40.82 -0.32 5.69 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.39 10.71 7.67 -40.82 -0.31 10.40 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.16 1.15 6.14 -52.49 -0.32 0.83 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -35.03 332.82 -7.19 -42.22 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.34 Total: 8.29 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.25 Total: 6.76 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.68 Total: -69.42 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.03 -7.19 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152822867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.049 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds