Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39068 * 120.00301 * 179.97438 * 2 1 3 5 5 C 1.39451 * 120.40197 * 359.97438 * 4 2 1 6 6 C 1.38224 * 118.43118 * 179.97438 * 5 4 2 7 7 C 1.39533 * 119.15777 * 359.97438 * 6 5 4 8 8 C 1.47845 * 119.63852 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99669 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00207 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47509 * 180.02562 * 11 10 8 13 13 N 1.46495 * 109.47178 * 180.02562 * 12 11 10 14 14 C 1.36943 * 119.99816 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99662 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00125 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99666 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00266 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46736 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46915 * 120.00275 * 18 16 14 21 21 H 1.48495 * 109.47402 * 240.00641 * 18 16 14 22 22 N 1.32833 * 120.72633 * 0.02562 * 7 6 5 23 23 C 1.31323 * 121.71734 * 359.72400 * 22 7 6 24 24 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 27 27 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 28 28 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 29 29 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 30 30 H 1.08002 * 120.78078 * 359.95664 * 5 4 2 31 31 H 1.08000 * 120.42378 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99497 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47072 * 300.00549 * 11 10 8 34 34 H 1.09002 * 109.46744 * 59.99933 * 11 10 8 35 35 H 1.09005 * 109.46878 * 300.00589 * 12 11 10 36 36 H 1.08999 * 109.47074 * 59.99385 * 12 11 10 37 37 H 0.96994 * 120.00199 * 359.97438 * 13 12 11 38 38 H 0.96999 * 119.99653 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.61977 * 180.26876 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1604 -1.2043 0.0005 5 6 1.4717 -2.4169 0.0016 6 6 2.2036 -3.5894 0.0016 7 6 3.5973 -3.5209 -0.0001 8 6 4.3907 -4.7684 -0.0007 9 8 3.8284 -5.8462 0.0007 10 7 5.7371 -4.7108 -0.0028 11 6 6.5233 -5.9470 -0.0029 12 6 8.0142 -5.6033 -0.0049 13 7 8.8002 -6.8395 -0.0055 14 6 10.1684 -6.7809 -0.0078 15 1 10.6678 -5.8233 -0.0087 16 6 10.9133 -7.9522 -0.0079 17 7 10.3045 -9.1192 -0.0063 18 14 12.7796 -7.8723 -0.0103 19 1 13.2141 -6.4523 -0.0112 20 1 13.3055 -8.5498 1.2020 21 1 13.3026 -8.5512 -1.2230 22 7 4.2190 -2.3471 -0.0011 23 6 3.5551 -1.2141 -0.0060 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 -0.5139 -0.8900 27 1 2.3791 1.5835 1.0277 28 1 3.1499 1.1384 -0.5139 29 1 1.6083 2.0284 -0.5138 30 1 0.3919 -2.4393 0.0028 31 1 1.7032 -4.5465 0.0028 32 1 6.1857 -3.8507 -0.0036 33 1 6.2860 -6.5285 0.8880 34 1 6.2833 -6.5301 -0.8920 35 1 8.2517 -5.0215 -0.8955 36 1 8.2538 -5.0203 0.8844 37 1 8.3516 -7.6995 -0.0044 38 1 10.8250 -9.9377 -0.0068 39 1 4.0952 -0.2789 -0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152822867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -1.670738 kcal Electronic energy + Delta-G solvation = -20263.041238 eV Core-core repulsion = 17012.217288 eV Total energy + Delta-G solvation = -3250.823950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65853 -40.24284 -37.75629 -37.29432 -35.51767 -33.42734 -33.08257 -31.68269 -29.44809 -29.26437 -26.78893 -25.45167 -24.30380 -23.38641 -22.80963 -21.51927 -19.46128 -19.05274 -18.14875 -17.62944 -16.85731 -16.75185 -16.38231 -16.15985 -15.97411 -15.37802 -15.35810 -15.21584 -14.98949 -14.75473 -14.23179 -14.17241 -13.66695 -13.42938 -13.10087 -13.05329 -13.04251 -12.69171 -12.61394 -12.50997 -12.04505 -11.86215 -11.42168 -11.35008 -11.00555 -10.64814 -10.55861 -10.15783 -9.06894 -8.45179 -7.96430 -5.28189 -0.17934 0.30398 1.48666 1.50656 1.60911 1.75397 2.00311 2.11199 2.58408 2.93059 3.26104 3.37470 3.73452 3.76925 3.97546 4.02484 4.08814 4.19361 4.21096 4.29504 4.46969 4.52751 4.56204 4.73070 4.77348 4.87846 4.90853 4.98260 5.00158 5.11388 5.11888 5.36432 5.40820 5.49459 6.09477 6.19376 6.24305 6.44632 6.88343 7.18541 7.30381 8.01145 8.25759 9.27529 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.002554 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.861845 B =10960.406511 C =11613.216954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.617 5.617 3 C 0.077 3.923 4 C 0.196 3.804 5 C -0.170 4.170 6 C -0.059 4.059 7 C -0.021 4.021 8 C 0.570 3.430 9 O -0.583 6.583 10 N -0.699 5.699 11 C 0.127 3.873 12 C 0.150 3.850 13 N -0.746 5.746 14 C -0.248 4.248 15 H 0.083 0.917 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.292 1.292 21 H -0.292 1.292 22 N -0.429 5.429 23 C 0.022 3.978 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.165 0.835 31 H 0.143 0.857 32 H 0.418 0.582 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 26.422 -0.109 35.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.324 5.324 3 C -0.065 4.065 4 C 0.086 3.914 5 C -0.200 4.200 6 C -0.080 4.080 7 C -0.159 4.159 8 C 0.358 3.642 9 O -0.463 6.463 10 N -0.350 5.350 11 C 0.002 3.998 12 C 0.023 3.977 13 N -0.389 5.389 14 C -0.379 4.379 15 H 0.100 0.900 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.219 1.219 21 H -0.219 1.219 22 N -0.140 5.140 23 C -0.146 4.146 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.206 0.794 38 H 0.061 0.939 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.666 25.943 -0.106 34.450 hybrid contribution 0.187 -0.574 0.021 0.604 sum -22.480 25.369 -0.085 33.895 Atomic orbital electron populations 1.21967 0.77344 1.04747 1.02096 1.46632 1.06649 1.02926 1.76203 1.22057 0.97978 0.83745 1.02728 1.19200 0.92833 0.87693 0.91665 1.21248 1.01633 0.89563 1.07539 1.21904 0.92752 1.00365 0.93028 1.20404 0.92157 0.90877 1.12438 1.18244 0.82172 0.88207 0.75580 1.90743 1.71782 1.30864 1.52937 1.45601 1.05710 1.10268 1.73426 1.21219 0.90643 0.86510 1.01390 1.20810 0.88258 0.89414 0.99174 1.42422 1.03191 1.03581 1.89751 1.19697 0.83398 0.93159 1.41648 0.89956 1.25709 1.03103 0.94944 1.03340 1.69853 1.35913 0.97167 1.59191 0.84954 0.79451 0.77926 0.76665 1.18642 1.21942 1.21929 1.67249 1.41203 0.97966 1.07577 1.22828 0.89940 0.96608 1.05261 0.88095 0.91930 0.91841 0.91905 0.90512 0.88819 0.81751 0.83932 0.74487 0.92470 0.92453 0.94612 0.94614 0.79367 0.93866 0.79859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 9.42 127.77 1.20 1.50 16 2 N -0.62 -5.24 3.39 -746.74 -2.53 -7.77 16 3 C 0.08 0.28 10.17 127.77 1.30 1.58 16 4 C 0.20 2.93 6.57 38.58 0.25 3.19 16 5 C -0.17 -2.78 9.40 22.56 0.21 -2.56 16 6 C -0.06 -1.37 9.62 22.58 0.22 -1.15 16 7 C -0.02 -0.60 6.74 41.85 0.28 -0.32 16 8 C 0.57 20.01 7.80 86.79 0.68 20.69 16 9 O -0.58 -24.16 16.31 -3.91 -0.06 -24.22 16 10 N -0.70 -23.49 5.54 -465.98 -2.58 -26.08 16 11 C 0.13 4.92 5.79 86.38 0.50 5.42 16 12 C 0.15 6.31 6.37 86.38 0.55 6.87 16 13 N -0.75 -39.94 5.60 -343.46 -1.92 -41.87 16 14 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 15 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 16 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 17 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 18 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 N -0.43 -10.68 9.52 -184.38 -1.75 -12.44 16 23 C 0.02 0.39 10.38 85.07 0.88 1.27 16 24 H 0.10 -0.05 7.79 -2.39 -0.02 -0.07 16 25 H 0.06 0.23 7.97 -2.39 -0.02 0.21 16 26 H 0.06 0.22 7.98 -2.38 -0.02 0.21 16 27 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.08 0.27 6.19 -2.39 -0.01 0.26 16 29 H 0.09 -0.01 7.92 -2.38 -0.02 -0.03 16 30 H 0.17 1.68 6.85 -2.91 -0.02 1.66 16 31 H 0.14 3.33 7.63 -2.91 -0.02 3.31 16 32 H 0.42 12.34 7.79 -92.71 -0.72 11.62 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 35 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.37 21.48 7.67 -92.71 -0.71 20.77 16 38 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.18 2.15 6.14 -2.91 -0.02 2.13 16 Total: -1.00 -76.58 332.82 0.48 -76.10 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -0.35 Total: 29.43 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.38 Total: 18.93 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -8.51 Total: -149.20 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -76.58 0.48 -76.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152822867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.428 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds