Wall clock time and date at job start Wed Apr 15 2020 11:43:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46491 * 1
3 3 C 1.46499 * 120.00446 * 2 1
4 4 C 1.53005 * 109.46704 * 275.36546 * 3 2 1
5 5 H 1.08990 * 112.74437 * 44.42069 * 4 3 2
6 6 C 1.53499 * 113.46310 * 273.67327 * 4 3 2
7 7 C 1.53615 * 83.30521 * 219.17143 * 6 4 3
8 8 N 1.47067 * 88.00286 * 26.02489 * 7 6 4
9 9 C 1.36937 * 136.05537 * 152.89531 * 8 7 6
10 10 H 1.08005 * 119.99726 * 178.25931 * 9 8 7
11 11 C 1.38807 * 120.00122 * 358.25923 * 9 8 7
12 12 N 1.31617 * 120.00340 * 359.97438 * 11 9 8
13 13 Si 1.86806 * 120.00019 * 180.02562 * 11 9 8
14 14 H 1.48506 * 109.47063 * 359.97438 * 13 11 9
15 15 H 1.48496 * 109.47371 * 119.99989 * 13 11 9
16 16 H 1.48510 * 109.46727 * 239.99813 * 13 11 9
17 17 C 1.34777 * 120.00003 * 180.02562 * 2 1 3
18 18 O 1.21276 * 120.00252 * 180.02562 * 17 2 1
19 19 C 1.50707 * 119.99955 * 359.97438 * 17 2 1
20 20 C 1.50698 * 109.46954 * 180.02562 * 19 17 2
21 21 C 1.34674 * 126.58979 * 84.98057 * 20 19 17
22 22 N 1.34130 * 108.01921 * 180.24351 * 21 20 19
23 23 C 1.30500 * 109.25557 * 359.61767 * 22 21 20
24 24 N 1.35047 * 108.70059 * 0.37947 * 23 22 21
25 25 H 0.97002 * 126.39930 * 179.75930 * 24 23 22
26 26 H 1.09002 * 109.47342 * 264.80296 * 1 2 3
27 27 H 1.08999 * 109.47570 * 24.80062 * 1 2 3
28 28 H 1.09002 * 109.47449 * 144.80708 * 1 2 3
29 29 H 1.08996 * 109.47133 * 35.35678 * 3 2 1
30 30 H 1.08997 * 109.47462 * 155.36445 * 3 2 1
31 31 H 1.08999 * 114.20846 * 332.74665 * 6 4 3
32 32 H 1.09003 * 114.20447 * 105.56681 * 6 4 3
33 33 H 1.08993 * 113.41490 * 271.24181 * 7 6 4
34 34 H 1.08998 * 113.55600 * 140.82797 * 7 6 4
35 35 H 0.96996 * 120.00163 * 180.02562 * 12 11 9
36 36 H 1.09000 * 109.46932 * 60.00064 * 19 17 2
37 37 H 1.08998 * 109.46825 * 300.00292 * 19 17 2
38 38 H 1.07994 * 125.99031 * 359.97438 * 21 20 19
39 39 H 1.08000 * 125.65475 * 180.14545 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3357 1.7777 -1.4363
5 1 1.4093 1.6932 -2.0042
6 6 3.5574 1.2092 -2.1713
7 6 3.6553 2.6341 -2.7367
8 7 2.9607 3.1057 -1.5293
9 6 2.9160 4.2692 -0.8085
10 1 2.2720 4.3449 0.0552
11 6 3.6984 5.3511 -1.1879
12 7 4.4836 5.2587 -2.2402
13 14 3.6380 6.9380 -0.2042
14 1 2.6842 6.7852 0.9237
15 1 4.9905 7.2421 0.3284
16 1 3.1909 8.0485 -1.0831
17 6 2.1388 -1.1672 -0.0005
18 8 3.3516 -1.1673 -0.0001
19 6 1.3853 -2.4724 -0.0005
20 6 2.3646 -3.6178 -0.0005
21 6 2.9581 -4.1664 1.0767
22 7 3.7601 -5.1536 0.6507
23 6 3.6798 -5.2428 -0.6488
24 7 2.8219 -4.3003 -1.0953
25 1 2.5759 -4.1372 -2.0194
26 1 -0.3634 -0.0931 1.0234
27 1 -0.3634 0.9328 -0.4310
28 1 -0.3634 -0.8398 -0.5923
29 1 1.6534 2.0024 0.5947
30 1 3.1881 1.1162 0.4284
31 1 4.3831 0.9304 -1.5166
32 1 3.3179 0.4484 -2.9143
33 1 3.0809 2.7773 -3.6519
34 1 4.6785 3.0004 -2.8199
35 1 5.0306 6.0147 -2.5051
36 1 0.7583 -2.5299 -0.8903
37 1 0.7589 -2.5302 0.8897
38 1 2.8169 -3.8619 2.1031
39 1 4.2140 -5.9505 -1.2654
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001263811938.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:43:14
Heat of formation + Delta-G solvation = 89.427080 kcal
Electronic energy + Delta-G solvation = -21614.381207 eV
Core-core repulsion = 18367.507555 eV
Total energy + Delta-G solvation = -3246.873652 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 278.148 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.11174 -39.72591 -37.90403 -35.23217 -32.93307 -32.23019 -31.89795 -28.80105
-27.88847 -27.14115 -25.92993 -23.39798 -22.41936 -21.61405 -20.97828 -19.30667
-19.10935 -17.86929 -17.11232 -16.62889 -15.92298 -15.67508 -14.84690 -14.74374
-14.44944 -14.02222 -13.65151 -13.61228 -13.35473 -13.17371 -13.01743 -12.72549
-12.25819 -12.13794 -11.96446 -11.49110 -11.07488 -10.84910 -10.73794 -10.39664
-10.09778 -10.06393 -9.84526 -9.77665 -9.71408 -9.43948 -8.78834 -8.43241
-8.29488 -6.86774 -5.75263 -3.08636 1.91257 2.75079 2.96201 3.10105
3.30293 3.38856 3.43525 3.46517 4.45112 4.45914 4.64397 4.74956
4.77913 5.08084 5.20395 5.24073 5.34396 5.36389 5.47688 5.55422
5.60534 5.64127 5.88326 5.99127 6.08911 6.11671 6.40006 6.50666
6.64953 6.65815 6.76062 6.81912 7.26476 7.26805 7.46251 7.57068
7.61334 7.99098 7.99907 8.34336 9.03730 9.71316 10.65964 11.41784
Molecular weight = 278.15amu
Principal moments of inertia in cm(-1)
A = 0.031119 B = 0.003747 C = 0.003611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 899.554204 B = 7470.279069 C = 7752.443048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.611 5.611
3 C 0.114 3.886
4 C 0.132 3.868
5 H 0.039 0.961
6 C -0.156 4.156
7 C 0.150 3.850
8 N -0.601 5.601
9 C -0.219 4.219
10 H 0.080 0.920
11 C -0.007 4.007
12 N -0.918 5.918
13 Si 0.911 3.089
14 H -0.279 1.279
15 H -0.289 1.289
16 H -0.291 1.291
17 C 0.507 3.493
18 O -0.520 6.520
19 C -0.064 4.064
20 C -0.003 4.003
21 C -0.009 4.009
22 N -0.495 5.495
23 C 0.184 3.816
24 N -0.562 5.562
25 H 0.418 0.582
26 H 0.055 0.945
27 H 0.076 0.924
28 H 0.065 0.935
29 H 0.072 0.928
30 H 0.089 0.911
31 H 0.081 0.919
32 H 0.045 0.955
33 H 0.021 0.979
34 H 0.073 0.927
35 H 0.253 0.747
36 H 0.098 0.902
37 H 0.114 0.886
38 H 0.166 0.834
39 H 0.206 0.794
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.035 -18.115 1.408 20.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.346 5.346
3 C -0.009 4.009
4 C 0.023 3.977
5 H 0.056 0.944
6 C -0.195 4.195
7 C 0.024 3.976
8 N -0.327 5.327
9 C -0.346 4.346
10 H 0.098 0.902
11 C -0.204 4.204
12 N -0.565 5.565
13 Si 0.742 3.258
14 H -0.205 1.205
15 H -0.216 1.216
16 H -0.218 1.218
17 C 0.293 3.707
18 O -0.395 6.395
19 C -0.105 4.105
20 C -0.119 4.119
21 C -0.157 4.157
22 N -0.214 5.214
23 C -0.100 4.100
24 N -0.165 5.165
25 H 0.255 0.745
26 H 0.074 0.926
27 H 0.095 0.905
28 H 0.083 0.917
29 H 0.090 0.910
30 H 0.107 0.893
31 H 0.100 0.900
32 H 0.064 0.936
33 H 0.038 0.962
34 H 0.091 0.909
35 H 0.063 0.937
36 H 0.116 0.884
37 H 0.132 0.868
38 H 0.183 0.817
39 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -8.783 -18.234 2.062 20.343
hybrid contribution -0.860 1.660 -0.689 1.992
sum -9.642 -16.574 1.372 19.224
Atomic orbital electron populations
1.21795 0.80031 1.03362 1.01480 1.47887 1.06723 1.06538 1.73413
1.21922 0.97644 0.82252 0.99049 1.22415 0.95065 0.87046 0.93136
0.94381 1.23649 0.98799 0.97312 0.99692 1.22092 0.98653 0.87845
0.89008 1.45595 1.50977 1.08404 1.27689 1.18923 1.20911 0.88148
1.06606 0.90203 1.24788 0.99225 0.98205 0.98154 1.69848 1.29391
1.30629 1.26588 0.86062 0.77389 0.83383 0.78998 1.20451 1.21642
1.21790 1.20387 0.88232 0.84857 0.77176 1.90759 1.13588 1.86919
1.48272 1.20089 0.96093 0.89010 1.05336 1.20494 1.04590 0.99169
0.87647 1.21990 0.98403 0.96711 0.98643 1.70259 1.21520 1.20301
1.09346 1.24897 0.96734 0.96100 0.92241 1.43185 1.35911 1.27879
1.09567 0.74464 0.92609 0.90472 0.91659 0.91011 0.89271 0.90028
0.93607 0.96171 0.90919 0.93713 0.88423 0.86783 0.81674 0.77705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.70 10.17 59.84 0.61 1.30 16
2 N -0.61 -8.32 2.87 -181.58 -0.52 -8.84 16
3 C 0.11 2.05 5.38 -4.04 -0.02 2.03 16
4 C 0.13 2.69 4.31 -72.39 -0.31 2.38 16
5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
6 C -0.16 -3.24 8.02 -26.15 -0.21 -3.45 16
7 C 0.15 3.68 7.44 -8.44 -0.06 3.62 16
8 N -0.60 -15.48 3.65 -176.79 -0.65 -16.13 16
9 C -0.22 -6.08 10.55 -15.06 -0.16 -6.24 16
10 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16
11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16
12 N -0.92 -27.64 11.47 55.49 0.64 -27.00 16
13 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16
14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
17 C 0.51 7.08 7.67 -10.98 -0.08 7.00 16
18 O -0.52 -9.71 15.53 5.56 0.09 -9.63 16
19 C -0.06 -0.59 4.88 -29.03 -0.14 -0.73 16
20 C 0.00 -0.03 5.73 -81.60 -0.47 -0.50 16
21 C -0.01 -0.12 11.79 -17.81 -0.21 -0.33 16
22 N -0.50 -6.82 11.25 -14.66 -0.16 -6.99 16
23 C 0.18 1.91 13.04 -90.37 -1.18 0.73 16
24 N -0.56 -5.35 6.15 -10.30 -0.06 -5.42 16
25 H 0.42 2.70 8.96 -40.82 -0.37 2.33 16
26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16
28 H 0.06 0.41 6.66 -51.93 -0.35 0.07 16
29 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16
30 H 0.09 1.84 7.01 -51.93 -0.36 1.48 16
31 H 0.08 1.82 7.94 -51.93 -0.41 1.41 16
32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.07 1.99 7.04 -51.93 -0.37 1.62 16
35 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16
36 H 0.10 0.65 7.41 -51.93 -0.38 0.26 16
37 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16
38 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16
39 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16
LS Contribution 330.39 15.07 4.98 4.98
Total: -1.00 -36.67 330.39 -8.63 -45.31
By element:
Atomic # 1 Polarization: 6.64 SS G_CDS: -5.58 Total: 1.06 kcal
Atomic # 6 Polarization: 7.84 SS G_CDS: -2.33 Total: 5.50 kcal
Atomic # 7 Polarization: -63.61 SS G_CDS: -0.76 Total: -64.37 kcal
Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -36.67 -8.63 -45.31 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001263811938.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.733 kcal
(2) G-P(sol) polarization free energy of solvation -36.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds