Wall clock time and date at job start Wed Apr 15 2020 11:43:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46491 * 1
3 3 C 1.46499 * 120.00446 * 2 1
4 4 C 1.53005 * 109.46704 * 275.36546 * 3 2 1
5 5 H 1.08990 * 112.74437 * 44.42069 * 4 3 2
6 6 C 1.53499 * 113.46310 * 273.67327 * 4 3 2
7 7 C 1.53615 * 83.30521 * 219.17143 * 6 4 3
8 8 N 1.47067 * 88.00286 * 26.02489 * 7 6 4
9 9 C 1.36937 * 136.05537 * 152.89531 * 8 7 6
10 10 H 1.08005 * 119.99726 * 178.25931 * 9 8 7
11 11 C 1.38807 * 120.00122 * 358.25923 * 9 8 7
12 12 N 1.31617 * 120.00340 * 359.97438 * 11 9 8
13 13 Si 1.86806 * 120.00019 * 180.02562 * 11 9 8
14 14 H 1.48506 * 109.47063 * 359.97438 * 13 11 9
15 15 H 1.48496 * 109.47371 * 119.99989 * 13 11 9
16 16 H 1.48510 * 109.46727 * 239.99813 * 13 11 9
17 17 C 1.34777 * 120.00003 * 180.02562 * 2 1 3
18 18 O 1.21276 * 120.00252 * 180.02562 * 17 2 1
19 19 C 1.50707 * 119.99955 * 359.97438 * 17 2 1
20 20 C 1.50698 * 109.46954 * 180.02562 * 19 17 2
21 21 C 1.34674 * 126.58979 * 84.98057 * 20 19 17
22 22 N 1.34130 * 108.01921 * 180.24351 * 21 20 19
23 23 C 1.30500 * 109.25557 * 359.61767 * 22 21 20
24 24 N 1.35047 * 108.70059 * 0.37947 * 23 22 21
25 25 H 0.97002 * 126.39930 * 179.75930 * 24 23 22
26 26 H 1.09002 * 109.47342 * 264.80296 * 1 2 3
27 27 H 1.08999 * 109.47570 * 24.80062 * 1 2 3
28 28 H 1.09002 * 109.47449 * 144.80708 * 1 2 3
29 29 H 1.08996 * 109.47133 * 35.35678 * 3 2 1
30 30 H 1.08997 * 109.47462 * 155.36445 * 3 2 1
31 31 H 1.08999 * 114.20846 * 332.74665 * 6 4 3
32 32 H 1.09003 * 114.20447 * 105.56681 * 6 4 3
33 33 H 1.08993 * 113.41490 * 271.24181 * 7 6 4
34 34 H 1.08998 * 113.55600 * 140.82797 * 7 6 4
35 35 H 0.96996 * 120.00163 * 180.02562 * 12 11 9
36 36 H 1.09000 * 109.46932 * 60.00064 * 19 17 2
37 37 H 1.08998 * 109.46825 * 300.00292 * 19 17 2
38 38 H 1.07994 * 125.99031 * 359.97438 * 21 20 19
39 39 H 1.08000 * 125.65475 * 180.14545 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3357 1.7777 -1.4363
5 1 1.4093 1.6932 -2.0042
6 6 3.5574 1.2092 -2.1713
7 6 3.6553 2.6341 -2.7367
8 7 2.9607 3.1057 -1.5293
9 6 2.9160 4.2692 -0.8085
10 1 2.2720 4.3449 0.0552
11 6 3.6984 5.3511 -1.1879
12 7 4.4836 5.2587 -2.2402
13 14 3.6380 6.9380 -0.2042
14 1 2.6842 6.7852 0.9237
15 1 4.9905 7.2421 0.3284
16 1 3.1909 8.0485 -1.0831
17 6 2.1388 -1.1672 -0.0005
18 8 3.3516 -1.1673 -0.0001
19 6 1.3853 -2.4724 -0.0005
20 6 2.3646 -3.6178 -0.0005
21 6 2.9581 -4.1664 1.0767
22 7 3.7601 -5.1536 0.6507
23 6 3.6798 -5.2428 -0.6488
24 7 2.8219 -4.3003 -1.0953
25 1 2.5759 -4.1372 -2.0194
26 1 -0.3634 -0.0931 1.0234
27 1 -0.3634 0.9328 -0.4310
28 1 -0.3634 -0.8398 -0.5923
29 1 1.6534 2.0024 0.5947
30 1 3.1881 1.1162 0.4284
31 1 4.3831 0.9304 -1.5166
32 1 3.3179 0.4484 -2.9143
33 1 3.0809 2.7773 -3.6519
34 1 4.6785 3.0004 -2.8199
35 1 5.0306 6.0147 -2.5051
36 1 0.7583 -2.5299 -0.8903
37 1 0.7589 -2.5302 0.8897
38 1 2.8169 -3.8619 2.1031
39 1 4.2140 -5.9505 -1.2654
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001263811938.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 15 2020 11:43:13
Heat of formation + Delta-G solvation = 64.052504 kcal
Electronic energy + Delta-G solvation = -21615.481531 eV
Core-core repulsion = 18367.507555 eV
Total energy + Delta-G solvation = -3247.973976 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 278.148 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-42.92023 -40.95099 -39.58578 -36.40609 -34.30469 -33.75617 -32.78857 -30.10434
-29.90096 -27.98459 -26.97309 -25.41921 -23.94580 -22.46518 -21.87694 -21.05301
-20.26915 -18.77586 -18.66496 -17.93693 -17.27672 -16.86246 -16.48767 -15.83684
-15.67447 -15.56290 -15.01855 -14.77966 -14.43445 -14.05150 -13.95515 -13.87280
-13.70797 -13.46492 -13.11470 -13.01569 -12.92188 -12.66791 -12.47695 -12.21960
-11.81163 -11.67346 -11.22871 -10.97785 -10.92853 -10.87280 -10.73614 -9.54760
-9.27570 -8.91838 -7.89970 -5.24381 1.08890 1.44686 1.46694 1.56362
1.72685 2.05062 2.30165 2.38978 2.50107 3.30846 3.43124 3.66821
3.83356 3.89219 4.05763 4.14707 4.24284 4.35583 4.41235 4.44926
4.59111 4.64469 4.67844 4.72693 4.83568 4.85857 4.98446 5.03069
5.08603 5.21865 5.31074 5.48583 5.52402 5.73659 5.82323 5.93122
6.51276 6.63136 6.89252 7.17914 7.29612 7.60245 8.60886 9.27913
Molecular weight = 278.15amu
Principal moments of inertia in cm(-1)
A = 0.031119 B = 0.003747 C = 0.003611
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 899.554204 B = 7470.279069 C = 7752.443048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.609 5.609
3 C 0.129 3.871
4 C 0.140 3.860
5 H 0.060 0.940
6 C -0.131 4.131
7 C 0.144 3.856
8 N -0.630 5.630
9 C -0.222 4.222
10 H 0.091 0.909
11 C -0.072 4.072
12 N -0.957 5.957
13 Si 0.979 3.021
14 H -0.260 1.260
15 H -0.296 1.296
16 H -0.292 1.292
17 C 0.503 3.497
18 O -0.577 6.577
19 C -0.051 4.051
20 C -0.005 4.005
21 C -0.042 4.042
22 N -0.542 5.542
23 C 0.187 3.813
24 N -0.554 5.554
25 H 0.433 0.567
26 H 0.077 0.923
27 H 0.071 0.929
28 H 0.103 0.897
29 H 0.072 0.928
30 H 0.054 0.946
31 H 0.060 0.940
32 H 0.076 0.924
33 H 0.022 0.978
34 H 0.034 0.966
35 H 0.247 0.753
36 H 0.136 0.864
37 H 0.145 0.855
38 H 0.165 0.835
39 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.817 -19.462 1.451 23.348
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.342 5.342
3 C 0.004 3.996
4 C 0.034 3.966
5 H 0.077 0.923
6 C -0.169 4.169
7 C 0.019 3.981
8 N -0.357 5.357
9 C -0.350 4.350
10 H 0.109 0.891
11 C -0.264 4.264
12 N -0.606 5.606
13 Si 0.808 3.192
14 H -0.184 1.184
15 H -0.223 1.223
16 H -0.220 1.220
17 C 0.292 3.708
18 O -0.455 6.455
19 C -0.091 4.091
20 C -0.122 4.122
21 C -0.190 4.190
22 N -0.262 5.262
23 C -0.097 4.097
24 N -0.159 5.159
25 H 0.274 0.726
26 H 0.095 0.905
27 H 0.090 0.910
28 H 0.121 0.879
29 H 0.091 0.909
30 H 0.073 0.927
31 H 0.079 0.921
32 H 0.095 0.905
33 H 0.039 0.961
34 H 0.053 0.947
35 H 0.056 0.944
36 H 0.154 0.846
37 H 0.163 0.837
38 H 0.182 0.818
39 H 0.258 0.742
Dipole moment (debyes) X Y Z Total
from point charges -11.648 -19.616 2.108 22.911
hybrid contribution -0.004 1.985 -0.726 2.114
sum -11.652 -17.631 1.382 21.178
Atomic orbital electron populations
1.22143 0.76673 1.04764 1.03701 1.47912 1.08577 1.04761 1.72963
1.21384 0.96764 0.84557 0.96860 1.22505 0.95161 0.84061 0.94911
0.92271 1.23358 0.98369 0.95734 0.99483 1.22066 0.96562 0.90241
0.89280 1.45922 1.52057 1.09690 1.27984 1.19367 1.20059 0.88813
1.06714 0.89138 1.25674 0.99508 1.01718 0.99542 1.70050 1.30740
1.31207 1.28604 0.84993 0.77196 0.79079 0.77977 1.18363 1.22326
1.21952 1.21235 0.87826 0.86152 0.75580 1.90749 1.16294 1.87744
1.50752 1.20159 0.95405 0.84918 1.08613 1.20742 1.04576 0.99373
0.87546 1.22223 0.99526 0.97667 0.99573 1.70206 1.22985 1.21618
1.11363 1.25610 0.96120 0.96215 0.91767 1.43203 1.35273 1.27259
1.10133 0.72626 0.90452 0.91025 0.87901 0.90933 0.92742 0.92146
0.90514 0.96056 0.94714 0.94445 0.84610 0.83708 0.81761 0.74223
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.92 10.17 127.77 1.30 2.22 16
2 N -0.61 -14.85 2.87 -846.78 -2.43 -17.28 16
3 C 0.13 4.51 5.38 86.38 0.47 4.97 16
4 C 0.14 5.59 4.31 41.80 0.18 5.77 16
5 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
6 C -0.13 -5.40 8.02 30.97 0.25 -5.15 16
7 C 0.14 7.25 7.44 83.22 0.62 7.87 16
8 N -0.63 -32.71 3.65 -713.24 -2.60 -35.32 16
9 C -0.22 -12.39 10.55 84.03 0.89 -11.51 16
10 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16
11 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16
12 N -0.96 -59.48 11.47 21.65 0.25 -59.23 16
13 Si 0.98 46.16 29.55 68.60 2.03 48.18 16
14 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16
15 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16
16 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16
17 C 0.50 12.82 7.67 87.66 0.67 13.49 16
18 O -0.58 -21.26 15.53 -3.02 -0.05 -21.31 16
19 C -0.05 -0.73 4.88 29.10 0.14 -0.58 16
20 C -0.01 -0.11 5.73 40.95 0.23 0.12 16
21 C -0.04 -1.08 11.79 83.52 0.98 -0.10 16
22 N -0.54 -14.65 11.25 -200.31 -2.25 -16.91 16
23 C 0.19 3.54 13.04 180.26 2.35 5.89 16
24 N -0.55 -9.13 6.15 -186.49 -1.15 -10.28 16
25 H 0.43 4.16 8.96 -92.71 -0.83 3.33 16
26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
27 H 0.07 1.09 8.03 -2.39 -0.02 1.07 16
28 H 0.10 0.65 6.66 -2.39 -0.02 0.64 16
29 H 0.07 2.50 8.11 -2.39 -0.02 2.49 16
30 H 0.05 2.29 7.01 -2.39 -0.02 2.27 16
31 H 0.06 2.76 7.94 -2.39 -0.02 2.74 16
32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16
33 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.03 1.98 7.04 -2.39 -0.02 1.97 16
35 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16
36 H 0.14 0.96 7.41 -2.39 -0.02 0.95 16
37 H 0.15 1.25 8.11 -2.39 -0.02 1.23 16
38 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16
39 H 0.24 2.34 8.06 -2.91 -0.02 2.32 16
Total: -1.00 -84.12 330.39 2.57 -81.55
By element:
Atomic # 1 Polarization: 11.04 SS G_CDS: 0.23 Total: 11.27 kcal
Atomic # 6 Polarization: 10.76 SS G_CDS: 8.55 Total: 19.31 kcal
Atomic # 7 Polarization: -130.82 SS G_CDS: -8.19 Total: -139.01 kcal
Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal
Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal
Total: -84.12 2.57 -81.55 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001263811938.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.605 kcal
(2) G-P(sol) polarization free energy of solvation -84.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds