Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36940 * 136.05968 * 321.99137 * 8 4 3 10 10 H 1.07996 * 119.99816 * 355.15134 * 9 8 4 11 11 C 1.38806 * 119.99880 * 175.14672 * 9 8 4 12 12 N 1.31621 * 120.00131 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99863 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47085 * 90.00307 * 13 11 9 15 15 H 1.48503 * 109.47027 * 210.00185 * 13 11 9 16 16 H 1.48489 * 109.47320 * 330.00155 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.47303 * 179.97438 * 19 17 2 21 21 N 1.30502 * 125.65028 * 305.02455 * 20 19 17 22 22 C 1.34125 * 109.25590 * 179.97438 * 21 20 19 23 23 C 1.34665 * 108.02176 * 0.02562 * 22 21 20 24 24 N 1.35044 * 125.64969 * 124.71216 * 20 19 17 25 25 H 0.96994 * 126.39825 * 0.02562 * 24 20 19 26 26 H 1.09006 * 109.47338 * 95.23610 * 1 2 3 27 27 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 28 28 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 29 29 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 30 30 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 31 31 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 32 32 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 33 33 H 1.08996 * 113.47291 * 271.29559 * 7 6 4 34 34 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 35 35 H 0.97004 * 119.99834 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 37 37 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 38 38 H 1.08005 * 125.98546 * 180.02562 * 22 21 20 39 39 H 1.08007 * 126.59060 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2738 -0.8101 10 1 2.2091 4.3618 0.0204 11 6 3.7145 5.3406 -1.1491 12 7 4.5486 5.2334 -2.1616 13 14 3.6354 6.9283 -0.1682 14 1 4.6025 6.8638 0.9569 15 1 3.9780 8.0728 -1.0504 16 1 2.2630 7.1107 0.3686 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0018 21 7 3.3210 -3.7999 -0.8710 22 6 3.9926 -4.9190 -0.5617 23 6 3.4309 -5.4507 0.5407 24 7 2.4020 -4.6224 0.8998 25 1 1.8087 -4.7372 1.6585 26 1 -0.3634 -0.0938 -1.0234 27 1 -0.3633 -0.8394 0.5929 28 1 -0.3633 0.9331 0.4305 29 1 3.1872 1.1169 0.4307 30 1 1.6520 2.0031 0.5928 31 1 4.3946 0.9483 -1.5043 32 1 3.3410 0.4522 -2.9057 33 1 3.0847 2.7790 -3.6504 34 1 4.6765 3.0178 -2.8116 35 1 5.1220 5.9791 -2.3987 36 1 0.7591 -2.5303 0.8897 37 1 0.7585 -2.5298 -0.8902 38 1 4.8360 -5.3228 -1.1021 39 1 3.7365 -6.3546 1.0469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263815409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 94.864381 kcal Electronic energy + Delta-G solvation = -21618.209102 eV Core-core repulsion = 18371.571228 eV Total energy + Delta-G solvation = -3246.637873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09816 -39.60779 -37.77070 -35.12105 -32.56547 -32.29919 -31.96748 -28.76154 -27.79040 -27.27788 -25.94344 -23.28963 -22.35688 -21.63130 -20.79677 -19.13708 -19.00108 -17.92199 -16.97536 -16.55746 -15.86786 -15.56139 -14.98584 -14.58545 -14.21755 -13.99842 -13.78719 -13.58340 -13.25298 -13.07996 -12.85721 -12.64349 -12.23556 -12.00489 -11.87169 -11.39935 -10.97472 -10.75829 -10.66813 -10.31318 -10.05119 -9.93462 -9.75329 -9.66365 -9.58273 -9.32967 -8.70050 -8.47728 -8.18472 -6.77138 -5.67533 -3.01249 1.92365 2.81035 2.91454 3.12447 3.41277 3.43269 3.47368 3.49504 4.22821 4.51173 4.70223 4.70795 4.99926 5.14135 5.18078 5.36270 5.37085 5.43045 5.54230 5.60607 5.70032 5.73961 5.97917 6.00299 6.12333 6.19045 6.53871 6.65907 6.69510 6.77669 6.92482 6.93699 7.21763 7.36797 7.58277 7.67203 7.72091 8.08973 8.10967 8.47125 9.10923 9.78584 10.75438 11.48957 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.003766 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.854203 B = 7432.894878 C = 7784.276576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.154 4.154 7 C 0.146 3.854 8 N -0.602 5.602 9 C -0.217 4.217 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.513 3.487 18 O -0.505 6.505 19 C -0.053 4.053 20 C 0.220 3.780 21 N -0.456 5.456 22 C -0.025 4.025 23 C -0.061 4.061 24 N -0.569 5.569 25 H 0.415 0.585 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.020 0.980 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.169 0.831 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.028 -20.456 6.714 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.349 5.349 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.057 0.943 6 C -0.192 4.192 7 C 0.021 3.979 8 N -0.328 5.328 9 C -0.345 4.345 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.298 3.702 18 O -0.379 6.379 19 C -0.095 4.095 20 C -0.045 4.045 21 N -0.175 5.175 22 C -0.174 4.174 23 C -0.195 4.195 24 N -0.173 5.173 25 H 0.253 0.747 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.186 0.814 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.048 -19.564 6.093 22.400 hybrid contribution -0.694 0.319 1.483 1.668 sum -9.743 -19.245 7.576 22.862 Atomic orbital electron populations 1.21786 0.80177 1.02868 1.01721 1.47852 1.06606 1.06479 1.73934 1.21927 0.97510 0.82012 0.99148 1.22431 0.95291 0.86830 0.93143 0.94282 1.23625 0.98551 0.97211 0.99812 1.22163 0.98632 0.88253 0.88897 1.45586 1.51466 1.07844 1.27879 1.18857 1.17699 0.88854 1.09049 0.90416 1.24790 0.98721 0.98342 0.98572 1.69843 1.26300 1.31221 1.29005 0.86146 0.77510 0.83151 0.79077 1.21544 1.21705 1.20782 1.19977 0.88190 0.84442 0.77562 1.90787 1.13297 1.86589 1.47189 1.19991 0.95470 0.88791 1.05269 1.22425 0.99587 0.92544 0.89904 1.70295 1.05248 1.16015 1.25904 1.22410 1.02654 0.94467 0.97846 1.22696 0.94570 1.00046 1.02167 1.43227 1.27806 1.21199 1.25024 0.74734 0.92495 0.91899 0.90674 0.89407 0.91136 0.90054 0.93190 0.96270 0.90714 0.93724 0.87967 0.86497 0.81404 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.19 59.85 0.61 1.36 16 2 N -0.61 -8.87 2.87 -181.57 -0.52 -9.39 16 3 C 0.12 2.19 5.44 -4.04 -0.02 2.17 16 4 C 0.13 2.82 4.31 -72.41 -0.31 2.51 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -3.41 8.03 -26.13 -0.21 -3.62 16 7 C 0.15 3.74 7.52 -8.42 -0.06 3.67 16 8 N -0.60 -15.98 3.65 -176.78 -0.64 -16.63 16 9 C -0.22 -6.16 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.11 11.43 55.49 0.63 -27.48 16 13 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 C 0.51 7.82 7.66 -10.99 -0.08 7.74 16 18 O -0.51 -10.18 15.05 5.55 0.08 -10.10 16 19 C -0.05 -0.55 4.95 -29.04 -0.14 -0.69 16 20 C 0.22 2.77 6.96 -155.41 -1.08 1.68 16 21 N -0.46 -7.21 10.58 -10.82 -0.11 -7.32 16 22 C -0.02 -0.31 11.87 -17.82 -0.21 -0.53 16 23 C -0.06 -0.58 12.04 -16.56 -0.20 -0.77 16 24 N -0.57 -5.17 6.15 -10.23 -0.06 -5.23 16 25 H 0.42 2.14 8.96 -40.82 -0.37 1.77 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 28 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 29 H 0.09 1.88 7.00 -51.93 -0.36 1.51 16 30 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 31 H 0.08 1.93 7.94 -51.93 -0.41 1.52 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 2.11 6.92 -51.93 -0.36 1.75 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 0.63 7.41 -51.93 -0.38 0.25 16 37 H 0.12 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.17 1.74 8.06 -52.48 -0.42 1.31 16 39 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -38.02 329.27 -8.22 -46.24 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.56 Total: 0.60 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.97 Total: 6.88 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -0.71 Total: -66.05 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.02 -8.22 -46.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263815409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.104 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds