Wall clock time and date at job start Wed Apr 15 2020 11:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99628 * 2 1 4 4 H 1.08006 * 119.99382 * 203.22103 * 3 2 1 5 5 C 1.38807 * 120.00452 * 23.22351 * 3 2 1 6 6 N 1.31624 * 119.99952 * 13.88797 * 5 3 2 7 7 Si 1.86803 * 120.00177 * 193.88338 * 5 3 2 8 8 H 1.48500 * 109.46786 * 90.00146 * 7 5 3 9 9 H 1.48497 * 109.47169 * 209.99796 * 7 5 3 10 10 H 1.48497 * 109.47034 * 330.00357 * 7 5 3 11 11 C 1.46497 * 119.99940 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46942 * 90.00203 * 11 2 1 13 13 H 1.09001 * 110.92146 * 51.09565 * 12 11 2 14 14 C 1.55158 * 111.00578 * 175.00205 * 12 11 2 15 15 C 1.54316 * 103.10768 * 153.66209 * 14 12 11 16 16 N 1.47028 * 107.27100 * 337.71781 * 15 14 12 17 17 C 1.34771 * 125.65046 * 178.89901 * 16 15 14 18 18 O 1.21607 * 120.00197 * 180.02562 * 17 16 15 19 19 C 1.47428 * 119.99953 * 0.03165 * 17 16 15 20 20 C 1.41290 * 126.41278 * 359.68083 * 19 17 16 21 21 N 1.30450 * 108.02017 * 179.88069 * 20 19 17 22 22 N 1.39935 * 108.89849 * 0.38821 * 21 20 19 23 23 H 0.97002 * 125.75537 * 179.77837 * 22 21 20 24 24 C 1.34258 * 108.49156 * 359.74840 * 22 21 20 25 25 C 1.47430 * 108.70137 * 358.94217 * 16 15 14 26 26 H 1.08994 * 109.46973 * 275.16571 * 1 2 3 27 27 H 1.08999 * 109.46932 * 35.16542 * 1 2 3 28 28 H 1.08996 * 109.47108 * 155.16599 * 1 2 3 29 29 H 0.97000 * 119.99856 * 179.97438 * 6 5 3 30 30 H 1.09000 * 109.47184 * 330.00085 * 11 2 1 31 31 H 1.08999 * 109.47123 * 209.99627 * 11 2 1 32 32 H 1.09007 * 110.71945 * 35.20714 * 14 12 11 33 33 H 1.09007 * 110.71443 * 272.11824 * 14 12 11 34 34 H 1.09001 * 109.88380 * 97.13180 * 15 14 12 35 35 H 1.08995 * 109.88769 * 218.14608 * 15 14 12 36 36 H 1.07992 * 125.99059 * 0.02562 * 20 19 17 37 37 H 1.08004 * 126.29010 * 179.97438 * 24 22 21 38 38 H 1.08996 * 110.36953 * 142.96534 * 25 16 15 39 39 H 1.09001 * 110.36156 * 265.18055 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1641 1.2238 -0.3688 5 6 1.5400 2.3394 0.4740 6 7 0.4248 2.2566 1.1684 7 14 2.3021 4.0091 0.1266 8 1 1.7607 4.5447 -1.1483 9 1 1.9751 4.9426 1.2341 10 1 3.7763 3.8673 0.0175 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 2.9021 -0.9053 -2.0222 14 6 3.3347 -2.9866 -1.4846 15 6 2.9322 -3.6457 -2.8206 16 7 1.5984 -3.1377 -3.1736 17 6 0.9044 -3.4577 -4.2837 18 8 -0.1952 -2.9746 -4.4738 19 6 1.4784 -4.3937 -5.2676 20 6 2.7392 -5.0263 -5.1870 21 7 2.8818 -5.7779 -6.2437 22 7 1.7399 -5.6570 -7.0434 23 1 1.5895 -6.1084 -7.8887 24 6 0.8872 -4.8114 -6.4431 25 6 1.1463 -2.2194 -2.1126 26 1 -0.3633 0.0925 1.0234 27 1 -0.3633 0.8401 -0.5919 28 1 -0.3633 -0.9326 -0.4316 29 1 -0.0010 3.0626 1.4999 30 1 1.6084 -2.0281 0.5147 31 1 3.1499 -1.1381 0.5143 32 1 3.1041 -3.6433 -0.6457 33 1 4.3926 -2.7239 -1.4874 34 1 3.6485 -3.3773 -3.5971 35 1 2.9000 -4.7290 -2.7047 36 1 3.4578 -4.9100 -4.3893 37 1 -0.0828 -4.5126 -6.8122 38 1 0.5922 -1.3854 -2.5433 39 1 0.5285 -2.7509 -1.3888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317826306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:37 Heat of formation + Delta-G solvation = 73.326846 kcal Electronic energy + Delta-G solvation = -21601.939848 eV Core-core repulsion = 18354.368038 eV Total energy + Delta-G solvation = -3247.571811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58033 -39.49710 -37.37062 -35.31783 -32.66228 -31.75749 -30.73799 -30.25935 -28.72686 -26.33069 -25.44745 -23.77685 -22.58328 -21.53014 -20.99406 -19.75936 -19.60545 -18.19316 -16.57609 -16.30494 -15.98965 -15.32103 -15.00608 -14.75742 -14.62888 -14.06276 -13.57464 -13.52273 -13.29085 -12.93746 -12.60973 -12.40243 -12.24369 -11.66685 -11.43513 -11.35945 -10.92255 -10.88952 -10.69109 -10.45437 -10.29878 -10.10734 -10.00602 -9.86894 -9.79389 -9.71055 -9.06936 -8.49669 -8.39714 -6.68702 -5.67049 -3.14393 1.34063 1.98708 2.44281 3.18225 3.41936 3.48186 3.48280 3.49142 4.38912 4.53531 4.58753 4.76911 4.83494 5.02784 5.08540 5.15537 5.31677 5.43864 5.52430 5.57153 5.73099 5.96093 6.00072 6.07500 6.09633 6.23878 6.33642 6.44743 6.61506 6.72393 6.79356 6.85076 6.93570 7.20742 7.44163 7.72970 7.79135 7.85920 8.37230 8.45334 9.28801 9.92751 10.41688 11.37270 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.003704 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.937027 B = 7557.505723 C = 7705.240984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.163 3.837 12 C -0.118 4.118 13 H 0.084 0.916 14 C -0.130 4.130 15 C 0.095 3.905 16 N -0.612 5.612 17 C 0.604 3.396 18 O -0.551 6.551 19 C -0.284 4.284 20 C 0.072 3.928 21 N -0.300 5.300 22 N -0.466 5.466 23 H 0.443 0.557 24 C 0.130 3.870 25 C 0.120 3.880 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.001 0.999 29 H 0.252 0.748 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.201 0.799 37 H 0.192 0.808 38 H 0.080 0.920 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -16.730 -12.329 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.323 5.323 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.035 3.965 12 C -0.140 4.140 13 H 0.102 0.898 14 C -0.169 4.169 15 C -0.028 4.028 16 N -0.345 5.345 17 C 0.393 3.607 18 O -0.430 6.430 19 C -0.299 4.299 20 C -0.116 4.116 21 N -0.121 5.121 22 N -0.172 5.172 23 H 0.288 0.712 24 C -0.023 4.023 25 C -0.001 4.001 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.217 0.783 37 H 0.209 0.791 38 H 0.098 0.902 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.476 -17.151 -12.991 21.976 hybrid contribution -0.254 1.308 -0.254 1.357 sum 4.222 -15.843 -13.245 21.077 Atomic orbital electron populations 1.20824 0.82663 0.95565 0.99386 1.43889 1.01816 1.00625 1.86014 1.19168 0.98403 0.85691 1.35246 0.91474 1.25014 0.98009 0.98476 0.98102 1.70075 1.20200 1.27146 1.37662 0.86286 0.78682 0.84342 0.77409 1.21556 1.21833 1.20515 1.20652 0.96398 0.88549 0.90932 1.23334 0.93532 0.95714 1.01412 0.89778 1.22712 1.00667 0.97802 0.95688 1.22327 0.84534 0.98162 0.97788 1.48350 1.18524 1.46418 1.21215 1.16843 0.83963 0.80248 0.79630 1.90786 1.20297 1.55186 1.76724 1.20344 0.98350 1.10921 1.00296 1.24837 0.96545 0.93491 0.96724 1.77167 1.05493 1.24194 1.05277 1.46241 1.13600 1.36451 1.20870 0.71220 1.23050 0.96220 0.90489 0.92500 1.22443 0.97418 0.92175 0.88055 0.95163 0.94306 0.98049 0.93807 0.94332 0.92869 0.90585 0.90163 0.91360 0.91430 0.78277 0.79126 0.90154 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 8.75 59.85 0.52 4.49 16 2 N -0.60 -14.80 2.89 -181.13 -0.52 -15.32 16 3 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 4 H 0.07 1.77 7.87 -52.48 -0.41 1.36 16 5 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 6 N -0.91 -26.64 10.77 55.49 0.60 -26.05 16 7 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.16 3.13 5.16 -4.04 -0.02 3.11 16 12 C -0.12 -1.91 3.28 -88.21 -0.29 -2.19 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.13 -1.51 6.40 -24.90 -0.16 -1.66 16 15 C 0.10 1.03 4.98 -3.07 -0.02 1.02 16 16 N -0.61 -9.04 3.33 -171.48 -0.57 -9.61 16 17 C 0.60 9.51 7.85 -12.52 -0.10 9.41 16 18 O -0.55 -10.64 17.15 5.27 0.09 -10.55 16 19 C -0.28 -3.49 6.09 -105.07 -0.64 -4.13 16 20 C 0.07 0.76 10.45 -16.98 -0.18 0.58 16 21 N -0.30 -3.20 12.63 30.86 0.39 -2.81 16 22 N -0.47 -3.75 7.29 30.85 0.22 -3.53 16 23 H 0.44 1.87 8.96 -182.72 -1.64 0.23 16 24 C 0.13 1.24 11.82 -16.56 -0.20 1.04 16 25 C 0.12 2.04 5.08 -2.26 -0.01 2.03 16 26 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 27 H 0.04 1.04 7.38 -51.93 -0.38 0.66 16 28 H 0.00 0.02 6.58 -51.93 -0.34 -0.32 16 29 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 31 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 32 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.07 0.65 6.81 -51.93 -0.35 0.30 16 35 H 0.07 0.60 7.01 -51.93 -0.36 0.23 16 36 H 0.20 1.67 4.47 -52.49 -0.23 1.43 16 37 H 0.19 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.08 1.60 8.01 -51.93 -0.42 1.19 16 39 H 0.06 1.09 7.61 -51.93 -0.40 0.69 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -34.50 318.24 -7.91 -42.41 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.57 Total: -2.88 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.32 Total: 6.58 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.12 Total: -57.31 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.50 -7.91 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317826306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.740 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds